{"id":"https://openalex.org/W2951940078","doi":"https://doi.org/10.1093/bioinformatics/btx397","title":"Pheno4J: a gene to phenotype graph database","display_name":"Pheno4J: a gene to phenotype graph database","publication_year":2017,"publication_date":"2017-06-13","ids":{"openalex":"https://openalex.org/W2951940078","doi":"https://doi.org/10.1093/bioinformatics/btx397","mag":"2951940078","pmid":"https://pubmed.ncbi.nlm.nih.gov/28633344"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btx397","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx397","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/20/3317/25165509/btx397.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/33/20/3317/25165509/btx397.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089293546","display_name":"Sajid Mughal","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sajid Mughal","raw_affiliation_strings":["Globe View, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Globe View, London, UK","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042102084","display_name":"Ismail Moghul","orcid":"https://orcid.org/0000-0003-3653-2327"},"institutions":[{"id":"https://openalex.org/I4210147892","display_name":"CRUK Lung Cancer Centre of Excellence","ror":"https://ror.org/04nm2mq63","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210147892"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ismail Moghul","raw_affiliation_strings":["UCL Cancer Institute, University College London, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UCL Cancer Institute, University College London, London, UK","institution_ids":["https://openalex.org/I4210147892","https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076949421","display_name":"Jing Yu","orcid":"https://orcid.org/0000-0001-8001-8494"},"institutions":[{"id":"https://openalex.org/I2802742124","display_name":"John Radcliffe Hospital","ror":"https://ror.org/0080acb59","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2802742124","https://openalex.org/I4210127145","https://openalex.org/I4210147381"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jing Yu","raw_affiliation_strings":["Nuffield Department of Clinical Neurosciences, University of Oxford, John Radcliffe Hospital, Oxford, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nuffield Department of Clinical Neurosciences, University of Oxford, John Radcliffe Hospital, Oxford, UK","institution_ids":["https://openalex.org/I2802742124","https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":null,"display_name":"UKIRDC","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"UKIRDC","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033873486","display_name":"Graeme C. Black","orcid":"https://orcid.org/0000-0001-8727-6592"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Graeme Black","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088502139","display_name":"Georgina Hall","orcid":"https://orcid.org/0000-0003-4580-3897"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Georgina Hall","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070351450","display_name":"Stuart Ingram","orcid":"https://orcid.org/0000-0002-5877-1268"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Stuart Ingram","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113694602","display_name":"Rachel Gillespie","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rachel Gillespie","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082659725","display_name":"Forbes Manson","orcid":"https://orcid.org/0000-0002-8342-660X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Forbes Manson","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085779691","display_name":"Panagiotis I. Sergouniotis","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Panagiotis Sergouniotis","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052612226","display_name":"Chris F. Inglehearn","orcid":"https://orcid.org/0000-0002-5143-2562"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chris Inglehearn","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015913449","display_name":"Carmel Toomes","orcid":"https://orcid.org/0000-0001-8373-9545"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Carmel Toomes","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110172461","display_name":"Manir Ali","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Manir Ali","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023564113","display_name":"Martin McKibbin","orcid":"https://orcid.org/0000-0003-4388-243X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Martin McKibbin","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086581621","display_name":"James A. Poulter","orcid":"https://orcid.org/0000-0003-2048-5693"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"James Poulter","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085805504","display_name":"Kamron N. Khan","orcid":"https://orcid.org/0000-0001-8654-1323"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kamron Khan","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017026298","display_name":"Emma Lord","orcid":"https://orcid.org/0000-0001-9216-7382"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Emma Lord","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045147759","display_name":"Andrea H. N\u00e9meth","orcid":"https://orcid.org/0000-0002-2941-7657"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Andrea Nemeth","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082031977","display_name":"Susan M. Downes","orcid":"https://orcid.org/0000-0001-7373-2665"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Susan Downes","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068068271","display_name":"Stephanie Halford","orcid":"https://orcid.org/0000-0003-2179-907X"},"institutions":[{"id":"https://openalex.org/I2802742124","display_name":"John Radcliffe Hospital","ror":"https://ror.org/0080acb59","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2802742124","https://openalex.org/I4210127145","https://openalex.org/I4210147381"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Stephanie Halford","raw_affiliation_strings":["Nuffield Department of Clinical Neurosciences, University of Oxford, John Radcliffe Hospital, Oxford, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nuffield Department of Clinical Neurosciences, University of Oxford, John Radcliffe Hospital, Oxford, UK","institution_ids":["https://openalex.org/I2802742124","https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Jing Yu","orcid":null},"institutions":[{"id":"https://openalex.org/I2802742124","display_name":"John Radcliffe Hospital","ror":"https://ror.org/0080acb59","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2802742124","https://openalex.org/I4210127145","https://openalex.org/I4210147381"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jing Yu","raw_affiliation_strings":["Nuffield Department of Clinical Neurosciences, University of Oxford, John Radcliffe Hospital, Oxford, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nuffield Department of Clinical Neurosciences, University of Oxford, John Radcliffe Hospital, Oxford, UK","institution_ids":["https://openalex.org/I2802742124","https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006114011","display_name":"Stefano Lise","orcid":"https://orcid.org/0000-0003-4472-6893"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Stefano Lise","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078058754","display_name":"Gavin Arno","orcid":"https://orcid.org/0000-0002-6165-7888"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gavin Arno","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068507148","display_name":"Alessia Fiorentino","orcid":"https://orcid.org/0000-0002-1403-4581"},"institutions":[{"id":"https://openalex.org/I4210150574","display_name":"Moorfields Eye Hospital","ror":"https://ror.org/03tb37539","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1325675289","https://openalex.org/I4210150574"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Alessia Fiorentino","raw_affiliation_strings":["Institute of Ophthalmology, University College London, London, UK","Moorfields Eye Hospital, London, UK","UCL Genetics Institute, University College London, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Ophthalmology, University College London, London, UK","institution_ids":["https://openalex.org/I45129253"]},{"raw_affiliation_string":"Moorfields Eye Hospital, London, UK","institution_ids":["https://openalex.org/I4210150574","https://openalex.org/I45129253"]},{"raw_affiliation_string":"UCL Genetics Institute, University College London, London, UK","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083903120","display_name":"Nikolas Pontikos","orcid":"https://orcid.org/0000-0003-1782-4711"},"institutions":[{"id":"https://openalex.org/I4210150574","display_name":"Moorfields Eye Hospital","ror":"https://ror.org/03tb37539","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1325675289","https://openalex.org/I4210150574"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Nikolas Pontikos","raw_affiliation_strings":["Institute of Ophthalmology, University College London, London, UK","Moorfields Eye Hospital, London, UK","UCL Genetics Institute, University College London, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Ophthalmology, University College London, London, UK","institution_ids":["https://openalex.org/I45129253"]},{"raw_affiliation_string":"Moorfields Eye Hospital, London, UK","institution_ids":["https://openalex.org/I4210150574","https://openalex.org/I45129253"]},{"raw_affiliation_string":"UCL Genetics Institute, University College London, London, UK","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068852782","display_name":"Vincent Plagnol","orcid":"https://orcid.org/0000-0002-5597-9215"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Vincent Plagnol","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077508604","display_name":"Michel Michaelides","orcid":"https://orcid.org/0000-0002-1552-7046"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Michel Michaelides","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068050684","display_name":"Alison J. Hardcastle","orcid":"https://orcid.org/0000-0002-0038-6770"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Alison J Hardcastle","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088604298","display_name":"Michael E. Cheetham","orcid":"https://orcid.org/0000-0001-6429-654X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Michael E Cheetham","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090291315","display_name":"Andrew R. Webster","orcid":"https://orcid.org/0000-0001-6915-9560"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Andrew R Webster","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013206705","display_name":"Veronica van Heyningen","orcid":"https://orcid.org/0000-0003-0359-0141"},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Veronica van Heyningen","raw_affiliation_strings":["Computer Science Department, University College London, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, University College London, London, UK","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010787548","display_name":"Tristan Clark","orcid":"https://orcid.org/0000-0001-6026-5295"},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Tristan Clark","raw_affiliation_strings":["Computer Science Department, University College London, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, University College London, London, UK","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011449139","display_name":"David S Gregory","orcid":null},"institutions":[{"id":"https://openalex.org/I4210150574","display_name":"Moorfields Eye Hospital","ror":"https://ror.org/03tb37539","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1325675289","https://openalex.org/I4210150574"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"David S Gregory","raw_affiliation_strings":["Computer Science Department, University College London, London, UK","Institute of Ophthalmology, University College London, London, UK","Moorfields Eye Hospital, London, UK","UCL Genetics Institute, University College London, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, University College London, London, UK","institution_ids":["https://openalex.org/I45129253"]},{"raw_affiliation_string":"Institute of Ophthalmology, University College London, London, UK","institution_ids":["https://openalex.org/I45129253"]},{"raw_affiliation_string":"Moorfields Eye Hospital, London, UK","institution_ids":["https://openalex.org/I4210150574","https://openalex.org/I45129253"]},{"raw_affiliation_string":"UCL Genetics Institute, University College London, London, UK","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083903120","display_name":"Nikolas Pontikos","orcid":"https://orcid.org/0000-0003-1782-4711"},"institutions":[{"id":"https://openalex.org/I4210150574","display_name":"Moorfields Eye Hospital","ror":"https://ror.org/03tb37539","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1325675289","https://openalex.org/I4210150574"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Nikolas Pontikos","raw_affiliation_strings":["Institute of Ophthalmology, University College London, London, UK","Moorfields Eye Hospital, London, UK","UCL Genetics Institute, University College London, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Ophthalmology, University College London, London, UK","institution_ids":["https://openalex.org/I45129253"]},{"raw_affiliation_string":"Moorfields Eye Hospital, London, UK","institution_ids":["https://openalex.org/I4210150574","https://openalex.org/I45129253"]},{"raw_affiliation_string":"UCL Genetics Institute, University College London, London, UK","institution_ids":["https://openalex.org/I45129253"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5083903120"],"corresponding_institution_ids":["https://openalex.org/I4210150574","https://openalex.org/I45129253"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":1.0187,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.80292275,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"33","issue":"20","first_page":"3317","last_page":"3319"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.43050000071525574,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.43050000071525574,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.16769999265670776,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.10300000011920929,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.7856754064559937},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7615055441856384},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.7459933757781982},{"id":"https://openalex.org/keywords/graph-database","display_name":"Graph database","score":0.5222400426864624},{"id":"https://openalex.org/keywords/relational-database","display_name":"Relational database","score":0.49805355072021484},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.47888725996017456},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3993373513221741},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.32869186997413635},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.28442907333374023},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.19875884056091309}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.7856754064559937},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7615055441856384},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.7459933757781982},{"id":"https://openalex.org/C176225458","wikidata":"https://www.wikidata.org/wiki/Q595971","display_name":"Graph database","level":3,"score":0.5222400426864624},{"id":"https://openalex.org/C5655090","wikidata":"https://www.wikidata.org/wiki/Q192588","display_name":"Relational database","level":2,"score":0.49805355072021484},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.47888725996017456},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3993373513221741},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.32869186997413635},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.28442907333374023},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.19875884056091309}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btx397","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx397","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/20/3317/25165509/btx397.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28633344","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28633344","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btx397","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx397","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/20/3317/25165509/btx397.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G100281082","display_name":null,"funder_award_id":"1759459","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G1036172374","display_name":null,"funder_award_id":"CL-2017-06-001","funder_id":"https://openalex.org/F4320319990","funder_display_name":"National Institute for Health and Care Research"},{"id":"https://openalex.org/G5170314737","display_name":"Imputation-aided analysis of DNA methylomes","funder_award_id":"1759459","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G544071009","display_name":"London Interdisciplinary Doctoral Programme","funder_award_id":"BB/M009513/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320315071","display_name":"NIHR Biomedical Research Centre, Royal Marsden NHS Foundation Trust/Institute of Cancer Research","ror":"https://ror.org/0187kwz08"},{"id":"https://openalex.org/F4320319990","display_name":"National Institute for Health and Care Research","ror":"https://ror.org/0187kwz08"},{"id":"https://openalex.org/F4320327683","display_name":"Moorfields Eye Hospital NHS Foundation Trust","ror":"https://ror.org/03tb37539"},{"id":"https://openalex.org/F4320332167","display_name":"Directorate for Biological Sciences","ror":"https://ror.org/001xhss06"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2951940078.pdf","grobid_xml":"https://content.openalex.org/works/W2951940078.grobid-xml"},"referenced_works_count":5,"referenced_works":["https://openalex.org/W783262033","https://openalex.org/W2136410628","https://openalex.org/W2160995259","https://openalex.org/W2280860630","https://openalex.org/W2417483443"],"related_works":["https://openalex.org/W2341492732","https://openalex.org/W3187193180","https://openalex.org/W106542691","https://openalex.org/W4287027380","https://openalex.org/W1699080303","https://openalex.org/W4281562483","https://openalex.org/W2800353001","https://openalex.org/W3115442681","https://openalex.org/W2391000461","https://openalex.org/W4386112722"],"abstract_inverted_index":{"SUMMARY:":[0],"Efficient":[1],"storage":[2,58],"and":[3,10,32,46,59,67,75,106],"querying":[4,60,97],"of":[5,8,35,61,64,98],"large":[6,62],"amounts":[7],"genetic":[9,18,44,66],"phenotypic":[11,68],"data":[12,118],"is":[13],"crucial":[14],"to":[15,29,54,95],"contemporary":[16],"clinical":[17],"research.":[19],"This":[20,70],"introduces":[21],"computational":[22],"challenges":[23],"for":[24],"classical":[25],"relational":[26],"databases,":[27],"due":[28],"the":[30,36,80,84,99],"sparsity":[31],"sheer":[33],"volume":[34],"data.":[37,69],"Our":[38],"Java":[39,105],"based":[40],"solution":[41],"loads":[42],"annotated":[43],"variants":[45],"well":[47],"phenotyped":[48],"patients":[49],"into":[50],"a":[51],"graph":[52],"database":[53],"allow":[55],"fast":[56],"efficient":[57],"volumes":[63],"structured":[65],"abstracts":[71],"technical":[72],"problems":[73],"away":[74],"lets":[76],"researchers":[77],"focus":[78],"on":[79],"science":[81],"rather":[82],"than":[83],"implementation.":[85],"We":[86],"have":[87],"also":[88],"developed":[89],"an":[90],"accompanying":[91],"webserver":[92],"with":[93],"end-points":[94],"facilitate":[96],"database.":[100],"AVAILABILITY":[101],"AND":[102],"IMPLEMENTATION:":[103],"The":[104],"Python":[107],"code":[108],"are":[109,119],"available":[110,120],"at":[111,121],"https://github.com/phenopolis/pheno4j.":[112],"CONTACT:":[113],"n.pontikos@ucl.ac.uk.":[114],"SUPPLEMENTARY":[115],"INFORMATION:":[116],"Supplementary":[117],"Bioinformatics":[122],"online.":[123]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2017,"cited_by_count":1}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
