{"id":"https://openalex.org/W2952527196","doi":"https://doi.org/10.1093/bioinformatics/btx346","title":"karyoploteR: an R/Bioconductor package to plot customizable genomes displaying arbitrary data","display_name":"karyoploteR: an R/Bioconductor package to plot customizable genomes displaying arbitrary data","publication_year":2017,"publication_date":"2017-05-26","ids":{"openalex":"https://openalex.org/W2952527196","doi":"https://doi.org/10.1093/bioinformatics/btx346","mag":"2952527196","pmid":"https://pubmed.ncbi.nlm.nih.gov/28575171"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btx346","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx346","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/19/3088/25164703/btx346.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/33/19/3088/25164703/btx346.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046399679","display_name":"Bernat Gel","orcid":"https://orcid.org/0000-0001-8878-349X"},"institutions":[{"id":"https://openalex.org/I4210163547","display_name":"Institute of Predictive and Personalized Medicine of Cancer","ror":"https://ror.org/05hxqvt36","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210163547"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Bernat Gel","raw_affiliation_strings":["Hereditary Cancer Group, Program for Predictive and Personalized Medicine of Cancer \u2013 Germans Trias i Pujol Research Institute (PMPPC-IGTP), Campus Can Ruti, Badalona, Spain"],"affiliations":[{"raw_affiliation_string":"Hereditary Cancer Group, Program for Predictive and Personalized Medicine of Cancer \u2013 Germans Trias i Pujol Research Institute (PMPPC-IGTP), Campus Can Ruti, Badalona, Spain","institution_ids":["https://openalex.org/I4210163547"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016791633","display_name":"Eduard Serra","orcid":"https://orcid.org/0000-0003-2895-9857"},"institutions":[{"id":"https://openalex.org/I4210158561","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de C\u00e1ncer","ror":"https://ror.org/04hya7017","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210158561"]},{"id":"https://openalex.org/I4210163547","display_name":"Institute of Predictive and Personalized Medicine of Cancer","ror":"https://ror.org/05hxqvt36","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210163547"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Eduard Serra","raw_affiliation_strings":["CIBERONC","Hereditary Cancer Group, Program for Predictive and Personalized Medicine of Cancer \u2013 Germans Trias i Pujol Research Institute (PMPPC-IGTP), Campus Can Ruti, Badalona, Spain"],"affiliations":[{"raw_affiliation_string":"CIBERONC","institution_ids":["https://openalex.org/I4210158561"]},{"raw_affiliation_string":"Hereditary Cancer Group, Program for Predictive and Personalized Medicine of Cancer \u2013 Germans Trias i Pujol Research Institute (PMPPC-IGTP), Campus Can Ruti, Badalona, Spain","institution_ids":["https://openalex.org/I4210163547"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5046399679"],"corresponding_institution_ids":["https://openalex.org/I4210163547"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":15.4942,"has_fulltext":true,"cited_by_count":857,"citation_normalized_percentile":{"value":0.99427874,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"33","issue":"19","first_page":"3088","last_page":"3090"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.979686439037323},{"id":"https://openalex.org/keywords/plot","display_name":"Plot (graphics)","score":0.8064670562744141},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.73946613073349},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6901403665542603},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.5991331338882446},{"id":"https://openalex.org/keywords/graphics","display_name":"Graphics","score":0.5322660803794861},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.5028373599052429},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.48789191246032715},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.46825844049453735},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4603988230228424},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4552653133869171},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4216834604740143},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.4125978946685791},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.41072744131088257},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.33280110359191895},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.269201397895813},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14822694659233093}],"concepts":[{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.979686439037323},{"id":"https://openalex.org/C167651023","wikidata":"https://www.wikidata.org/wiki/Q1474611","display_name":"Plot (graphics)","level":2,"score":0.8064670562744141},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.73946613073349},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6901403665542603},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.5991331338882446},{"id":"https://openalex.org/C21442007","wikidata":"https://www.wikidata.org/wiki/Q1027879","display_name":"Graphics","level":2,"score":0.5322660803794861},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.5028373599052429},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.48789191246032715},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.46825844049453735},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4603988230228424},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4552653133869171},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4216834604740143},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.4125978946685791},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.41072744131088257},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.33280110359191895},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.269201397895813},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14822694659233093},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btx346","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx346","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/19/3088/25164703/btx346.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28575171","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28575171","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:ddd.uab.cat:196516","is_oa":true,"landing_page_url":"https://ddd.uab.cat/record/196516","pdf_url":"https://ddd.uab.cat/record/196516","source":{"id":"https://openalex.org/S4306400380","display_name":"Dip\u00f2sit Digital de Documents de la UAB (Universitat Aut\u00f2noma de Barcelona)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I123044942","host_organization_name":"Universitat Aut\u00f2noma de Barcelona","host_organization_lineage":["https://openalex.org/I123044942"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:dnet:uabarcelona_::ba304cae0127bc38bd60068ff52df5cd","is_oa":true,"landing_page_url":"http://ddd.uab.cat/record/196516","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5870550","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5870550","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btx346","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx346","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/19/3088/25164703/btx346.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Peace, Justice and strong institutions","score":0.6200000047683716,"id":"https://metadata.un.org/sdg/16"}],"awards":[{"id":"https://openalex.org/G2620658983","display_name":null,"funder_award_id":"PI11/","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"},{"id":"https://openalex.org/G2634690353","display_name":null,"funder_award_id":"PI11/1609","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"},{"id":"https://openalex.org/G3559709381","display_name":null,"funder_award_id":"PI14/","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"},{"id":"https://openalex.org/G4623127488","display_name":null,"funder_award_id":"RTICC RD12/0036/008","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"},{"id":"https://openalex.org/G5556984391","display_name":null,"funder_award_id":"(ISCIII","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"},{"id":"https://openalex.org/G6042583956","display_name":null,"funder_award_id":"ISCIII","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G7779868532","display_name":null,"funder_award_id":"FEDER","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"}],"funders":[{"id":"https://openalex.org/F4320321505","display_name":"Generalitat de Catalunya","ror":"https://ror.org/01bg62x04"},{"id":"https://openalex.org/F4320322930","display_name":"Ministerio de Ciencia e Innovaci\u00f3n","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320334923","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2952527196.pdf","grobid_xml":"https://content.openalex.org/works/W2952527196.grobid-xml"},"referenced_works_count":6,"referenced_works":["https://openalex.org/W2072420737","https://openalex.org/W2110014529","https://openalex.org/W2158804744","https://openalex.org/W2180834397","https://openalex.org/W2320360917","https://openalex.org/W2411397641"],"related_works":["https://openalex.org/W1986823558","https://openalex.org/W2151651283","https://openalex.org/W3118004748","https://openalex.org/W2098339479","https://openalex.org/W4309247532","https://openalex.org/W2792006949","https://openalex.org/W3117086625","https://openalex.org/W2170830174","https://openalex.org/W2164765928","https://openalex.org/W3096946169"],"abstract_inverted_index":{"bgel@igtp.cat.":[0]},"counts_by_year":[{"year":2026,"cited_by_count":36},{"year":2025,"cited_by_count":132},{"year":2024,"cited_by_count":113},{"year":2023,"cited_by_count":143},{"year":2022,"cited_by_count":150},{"year":2021,"cited_by_count":146},{"year":2020,"cited_by_count":76},{"year":2019,"cited_by_count":47},{"year":2018,"cited_by_count":13},{"year":2017,"cited_by_count":1}],"updated_date":"2026-04-18T07:56:08.524223","created_date":"2025-10-10T00:00:00"}
