{"id":"https://openalex.org/W2562531153","doi":"https://doi.org/10.1093/bioinformatics/btx275","title":"Neuro-symbolic representation learning on biological knowledge graphs","display_name":"Neuro-symbolic representation learning on biological knowledge graphs","publication_year":2017,"publication_date":"2017-04-21","ids":{"openalex":"https://openalex.org/W2562531153","doi":"https://doi.org/10.1093/bioinformatics/btx275","mag":"2562531153","pmid":"https://pubmed.ncbi.nlm.nih.gov/28449114"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btx275","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx275","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/17/2723/25163898/btx275.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/33/17/2723/25163898/btx275.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073587968","display_name":"Mona Alshahrani","orcid":"https://orcid.org/0000-0002-9848-8248"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Mona Alshahrani","raw_affiliation_strings":["Computer, Electrical and Mathematical Sciences & Engineering Division, Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer, Electrical and Mathematical Sciences & Engineering Division, Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Mohammad Asif Khan","orcid":null},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Mohammad Asif Khan","raw_affiliation_strings":["Computer, Electrical and Mathematical Sciences & Engineering Division, Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer, Electrical and Mathematical Sciences & Engineering Division, Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067347682","display_name":"Omar Maddouri","orcid":"https://orcid.org/0000-0003-0305-0348"},"institutions":[{"id":"https://openalex.org/I4210144839","display_name":"Hamad bin Khalifa University","ror":"https://ror.org/03eyq4y97","country_code":"QA","type":"education","lineage":["https://openalex.org/I4210144839"]},{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["QA","SA"],"is_corresponding":false,"raw_author_name":"Omar Maddouri","raw_affiliation_strings":["Computer, Electrical and Mathematical Sciences & Engineering Division, Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia","Life Sciences Division, College of Science & Engineering, Hamad Bin Khalifa University, HBKU, Doha, Qatar"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer, Electrical and Mathematical Sciences & Engineering Division, Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"Life Sciences Division, College of Science & Engineering, Hamad Bin Khalifa University, HBKU, Doha, Qatar","institution_ids":["https://openalex.org/I4210144839"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080613861","display_name":"Akira R. Kinjo","orcid":"https://orcid.org/0000-0002-4006-8208"},"institutions":[{"id":"https://openalex.org/I4210152009","display_name":"Protein Research Foundation","ror":"https://ror.org/03yzv7g36","country_code":"JP","type":"other","lineage":["https://openalex.org/I4210152009"]},{"id":"https://openalex.org/I98285908","display_name":"The University of Osaka","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Akira R Kinjo","raw_affiliation_strings":["Institute for Protein Research, Osaka University 3-2 Yamadaoka, Suita, Osaka, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Protein Research, Osaka University 3-2 Yamadaoka, Suita, Osaka, Japan","institution_ids":["https://openalex.org/I4210152009","https://openalex.org/I98285908"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080481806","display_name":"N\u00faria Queralt-Rosi\u00f1ach","orcid":"https://orcid.org/0000-0003-0169-8159"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"N\u00faria Queralt-Rosinach","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043808311","display_name":"Robert Hoehndorf","orcid":"https://orcid.org/0000-0001-8149-5890"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":true,"raw_author_name":"Robert Hoehndorf","raw_affiliation_strings":["Computer, Electrical and Mathematical Sciences & Engineering Division, Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer, Electrical and Mathematical Sciences & Engineering Division, Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5043808311"],"corresponding_institution_ids":["https://openalex.org/I71920554"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":14.7293,"has_fulltext":true,"cited_by_count":153,"citation_normalized_percentile":{"value":0.9912322,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"33","issue":"17","first_page":"2723","last_page":"2730"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.5925999879837036,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.5925999879837036,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.24549999833106995,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.06750000268220901,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7768726348876953},{"id":"https://openalex.org/keywords/knowledge-graph","display_name":"Knowledge graph","score":0.5942503213882446},{"id":"https://openalex.org/keywords/rdf","display_name":"RDF","score":0.5924517512321472},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.5810468196868896},{"id":"https://openalex.org/keywords/knowledge-representation-and-reasoning","display_name":"Knowledge representation and reasoning","score":0.552920937538147},{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.5254320502281189},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4617244601249695},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.44733911752700806},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4431198239326477},{"id":"https://openalex.org/keywords/knowledge-extraction","display_name":"Knowledge extraction","score":0.43978777527809143},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.4352640211582184},{"id":"https://openalex.org/keywords/commonsense-knowledge","display_name":"Commonsense knowledge","score":0.41223737597465515},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.33872514963150024},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.1306130588054657}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7768726348876953},{"id":"https://openalex.org/C2987255567","wikidata":"https://www.wikidata.org/wiki/Q33002955","display_name":"Knowledge graph","level":2,"score":0.5942503213882446},{"id":"https://openalex.org/C147497476","wikidata":"https://www.wikidata.org/wiki/Q54872","display_name":"RDF","level":3,"score":0.5924517512321472},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.5810468196868896},{"id":"https://openalex.org/C161301231","wikidata":"https://www.wikidata.org/wiki/Q3478658","display_name":"Knowledge representation and reasoning","level":2,"score":0.552920937538147},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.5254320502281189},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4617244601249695},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.44733911752700806},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4431198239326477},{"id":"https://openalex.org/C120567893","wikidata":"https://www.wikidata.org/wiki/Q1582085","display_name":"Knowledge extraction","level":2,"score":0.43978777527809143},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.4352640211582184},{"id":"https://openalex.org/C30542707","wikidata":"https://www.wikidata.org/wiki/Q1603203","display_name":"Commonsense knowledge","level":3,"score":0.41223737597465515},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.33872514963150024},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.1306130588054657},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/btx275","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx275","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/17/2723/25163898/btx275.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28449114","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28449114","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:arXiv.org:1612.04256","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1612.04256","pdf_url":"https://arxiv.org/pdf/1612.04256","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:figshare.com:article/27087976","is_oa":true,"landing_page_url":"https://figshare.com/articles/journal_contribution/Neuro-symbolic_representation_learning_on_biological_knowledge_graphs/27087976","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:5860058","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5860058","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:repository.kaust.edu.sa:10754/623293","is_oa":true,"landing_page_url":"http://hdl.handle.net/10754/623293","pdf_url":null,"source":{"id":"https://openalex.org/S4306401596","display_name":"King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71920554","host_organization_name":"King Abdullah University of Science and Technology","host_organization_lineage":["https://openalex.org/I71920554"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btx275","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx275","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/17/2723/25163898/btx275.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1416398381","display_name":null,"funder_award_id":"MDM-2014-0370","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"},{"id":"https://openalex.org/G177484282","display_name":null,"funder_award_id":"FP7/2007-2013","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G2232211415","display_name":null,"funder_award_id":"115372","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G2759350490","display_name":null,"funder_award_id":"115191","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"},{"id":"https://openalex.org/G3222439407","display_name":"Medicina de sistemas para el estudio de las comorbilidades (MedSisCom)","funder_award_id":"PI13/00082","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"},{"id":"https://openalex.org/G4193446334","display_name":null,"funder_award_id":"2013-2016","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"},{"id":"https://openalex.org/G4432935095","display_name":null,"funder_award_id":"MDM-2014-0370","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G5040315192","display_name":null,"funder_award_id":"676559","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G5244886189","display_name":null,"funder_award_id":"PT13/0001/0023","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"},{"id":"https://openalex.org/G5440316326","display_name":null,"funder_award_id":"CP10/00524","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"},{"id":"https://openalex.org/G5830402311","display_name":null,"funder_award_id":"PT13/0001","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"},{"id":"https://openalex.org/G5964027172","display_name":null,"funder_award_id":"634143","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G6382720711","display_name":null,"funder_award_id":"115372","funder_id":"https://openalex.org/F4320314178","funder_display_name":"European Federation of Pharmaceutical Industries and Associations"},{"id":"https://openalex.org/G6764961654","display_name":null,"funder_award_id":"CPII16/00026","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"},{"id":"https://openalex.org/G7331901853","display_name":null,"funder_award_id":"EU H2020","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G7364720146","display_name":null,"funder_award_id":"FP7/2007-2013","funder_id":"https://openalex.org/F4320314178","funder_display_name":"European Federation of Pharmaceutical Industries and Associations"},{"id":"https://openalex.org/G7644280374","display_name":null,"funder_award_id":"PRB2-ISCIII","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"},{"id":"https://openalex.org/G8498993424","display_name":null,"funder_award_id":"PT13/0001","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G8824911526","display_name":null,"funder_award_id":"H2020","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"}],"funders":[{"id":"https://openalex.org/F4320311405","display_name":"Japan Agency for Medical Research and Development","ror":"https://ror.org/004rtk039"},{"id":"https://openalex.org/F4320314178","display_name":"European Federation of Pharmaceutical Industries and Associations","ror":"https://ror.org/00g1x4v36"},{"id":"https://openalex.org/F4320321837","display_name":"Ministerio de Econom\u00eda y Competitividad","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320322320","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38"},{"id":"https://openalex.org/F4320332999","display_name":"Horizon 2020 Framework Programme","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320334923","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886"},{"id":"https://openalex.org/F4320338078","display_name":"National Bioscience Database Center","ror":"https://ror.org/00097mb19"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2562531153.pdf","grobid_xml":"https://content.openalex.org/works/W2562531153.grobid-xml"},"referenced_works_count":53,"referenced_works":["https://openalex.org/W55962619","https://openalex.org/W103049419","https://openalex.org/W124940209","https://openalex.org/W1490161904","https://openalex.org/W1541735670","https://openalex.org/W1555563750","https://openalex.org/W1821527815","https://openalex.org/W1970647593","https://openalex.org/W1972793074","https://openalex.org/W1974896839","https://openalex.org/W1998898494","https://openalex.org/W2018740272","https://openalex.org/W2054470867","https://openalex.org/W2057545775","https://openalex.org/W2101234009","https://openalex.org/W2103017472","https://openalex.org/W2103260426","https://openalex.org/W2108798001","https://openalex.org/W2113072832","https://openalex.org/W2113142309","https://openalex.org/W2113310608","https://openalex.org/W2116034137","https://openalex.org/W2117486996","https://openalex.org/W2119002393","https://openalex.org/W2119220491","https://openalex.org/W2121604817","https://openalex.org/W2124045889","https://openalex.org/W2133109597","https://openalex.org/W2133550211","https://openalex.org/W2136265964","https://openalex.org/W2139315672","https://openalex.org/W2142572836","https://openalex.org/W2144086069","https://openalex.org/W2154851992","https://openalex.org/W2154896031","https://openalex.org/W2157414955","https://openalex.org/W2165428180","https://openalex.org/W2170282111","https://openalex.org/W2177317049","https://openalex.org/W2183717576","https://openalex.org/W2244718251","https://openalex.org/W2302501749","https://openalex.org/W2523679382","https://openalex.org/W2604272474","https://openalex.org/W2739999456","https://openalex.org/W2773787581","https://openalex.org/W2911562852","https://openalex.org/W2919115771","https://openalex.org/W3146347964","https://openalex.org/W4239696231","https://openalex.org/W4294170691","https://openalex.org/W6675354045","https://openalex.org/W6686420396"],"related_works":["https://openalex.org/W4285818553","https://openalex.org/W372138008","https://openalex.org/W4292070284","https://openalex.org/W2807873315","https://openalex.org/W4319071221","https://openalex.org/W4221142755","https://openalex.org/W4313174091","https://openalex.org/W3206452419","https://openalex.org/W4237581822","https://openalex.org/W4299805252"],"abstract_inverted_index":{"MOTIVATION:":[0],"Biological":[1],"data":[2,19,37,188,199],"and":[3,12,22,48,79,109,141,146,166,187],"knowledge":[4,16,65,74,96,123,164,178],"bases":[5,179],"increasingly":[6],"rely":[7],"on":[8,50,63,152],"Semantic":[9,175],"Web":[10,176],"technologies":[11],"the":[13,26,99,117,122,171],"use":[14,100,183],"of":[15,88,101,119,127,133,174],"graphs":[17],"for":[18,60,92],"integration,":[20],"retrieval":[21],"federated":[23],"queries.":[24],"In":[25],"past":[27],"years,":[28],"feature":[29,61],"learning":[30,62,186],"methods":[31],"that":[32,90,144],"are":[33,38,200],"applicable":[34],"to":[35,85,116,161,182],"graph-structured":[36],"becoming":[39],"available,":[40],"but":[41],"have":[42],"not":[43],"yet":[44],"widely":[45],"been":[46],"applied":[47,160],"evaluated":[49],"structured":[51],"biological":[52,64,163],"knowledge.":[53],"Results:":[54],"We":[55,112],"develop":[56],"a":[57],"novel":[58],"method":[59,68,157],"graphs.":[66,97],"Our":[67,156],"combines":[69],"symbolic":[70,77,102],"methods,":[71],"in":[72,121,180,184],"particular":[73],"representation":[75],"using":[76],"logic":[78],"automated":[80],"reasoning,":[81],"with":[82],"neural":[83],"networks":[84],"generate":[86],"embeddings":[87,105,115],"nodes":[89],"encode":[91],"related":[93],"information":[94],"within":[95],"Through":[98],"logic,":[103],"these":[104,114],"contain":[106],"both":[107],"explicit":[108],"implicit":[110],"information.":[111],"apply":[113],"prediction":[118],"edges":[120],"graph":[124],"representing":[125],"problems":[126],"function":[128],"prediction,":[129],"finding":[130],"candidate":[131],"genes":[132],"diseases,":[134],"protein-protein":[135],"interactions,":[136],"or":[137],"drug":[138],"target":[139],"relations,":[140],"demonstrate":[142],"performance":[143],"matches":[145],"sometimes":[147],"outperforms":[148],"traditional":[149],"approaches":[150],"based":[151,177],"manually":[153],"crafted":[154],"features.":[155],"can":[158],"be":[159],"any":[162],"graph,":[165],"will":[167],"thereby":[168],"open":[169],"up":[170],"increasing":[172],"amount":[173],"biology":[181],"machine":[185],"analytics.":[189],"AVAILABILITY":[190],"AND":[191],"IMPLEMENTATION:":[192],"https://github.com/bio-ontology-research-group/walking-rdf-and-owl.":[193],"CONTACT:":[194],"robert.hoehndorf@kaust.edu.sa.":[195],"SUPPLEMENTARY":[196],"INFORMATION:":[197],"Supplementary":[198],"available":[201],"at":[202],"Bioinformatics":[203],"online.":[204]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":15},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":19},{"year":2022,"cited_by_count":20},{"year":2021,"cited_by_count":20},{"year":2020,"cited_by_count":29},{"year":2019,"cited_by_count":19},{"year":2018,"cited_by_count":14},{"year":2017,"cited_by_count":2}],"updated_date":"2026-07-17T09:13:05.818461","created_date":"2025-10-10T00:00:00"}
