{"id":"https://openalex.org/W2587402318","doi":"https://doi.org/10.1093/bioinformatics/btx085","title":"FELLS: fast estimator of latent local structure","display_name":"FELLS: fast estimator of latent local structure","publication_year":2017,"publication_date":"2017-02-10","ids":{"openalex":"https://openalex.org/W2587402318","doi":"https://doi.org/10.1093/bioinformatics/btx085","mag":"2587402318","pmid":"https://pubmed.ncbi.nlm.nih.gov/28186245"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btx085","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx085","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/12/1889/25155547/btx085.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/33/12/1889/25155547/btx085.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000882827","display_name":"Damiano Piovesan","orcid":"https://orcid.org/0000-0001-8210-2390"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Damiano Piovesan","raw_affiliation_strings":["Department of Biomedical Sciences, University of Padua, Padova, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Sciences, University of Padua, Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060625212","display_name":"Ian Walsh","orcid":"https://orcid.org/0000-0003-3994-5522"},"institutions":[{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]},{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]},{"id":"https://openalex.org/I4210137615","display_name":"Bioprocessing Technology Institute","ror":"https://ror.org/049fnxe71","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I4210137615"]}],"countries":["IT","SG"],"is_corresponding":false,"raw_author_name":"Ian Walsh","raw_affiliation_strings":["Bioprocessing Technology Institute, Agency for Science, Technology and Research (A*STAR), Singapore, Singapore","Department of Biomedical Sciences, University of Padua, Padova, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioprocessing Technology Institute, Agency for Science, Technology and Research (A*STAR), Singapore, Singapore","institution_ids":["https://openalex.org/I4210137615","https://openalex.org/I115228651"]},{"raw_affiliation_string":"Department of Biomedical Sciences, University of Padua, Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046118465","display_name":"Giovanni Minervini","orcid":"https://orcid.org/0000-0001-7013-5785"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giovanni Minervini","raw_affiliation_strings":["Department of Biomedical Sciences, University of Padua, Padova, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Sciences, University of Padua, Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066560665","display_name":"Silvio C. E. Tosatto","orcid":"https://orcid.org/0000-0003-4525-7793"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]},{"id":"https://openalex.org/I4210113153","display_name":"Neuroscience Institute","ror":"https://ror.org/0240rwx68","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210113153","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Silvio C.E Tosatto","raw_affiliation_strings":["CNR Institute of Neuroscience, Padova, Italy","Department of Biomedical Sciences, University of Padua, Padova, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CNR Institute of Neuroscience, Padova, Italy","institution_ids":["https://openalex.org/I4210113153"]},{"raw_affiliation_string":"Department of Biomedical Sciences, University of Padua, Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5066560665"],"corresponding_institution_ids":["https://openalex.org/I138689650","https://openalex.org/I4210113153"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":4.3729,"has_fulltext":true,"cited_by_count":79,"citation_normalized_percentile":{"value":0.95285522,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":100},"biblio":{"volume":"33","issue":"12","first_page":"1889","last_page":"1891"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.8009999990463257,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.8009999990463257,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.07370000332593918,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.05130000039935112,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6554678082466125},{"id":"https://openalex.org/keywords/executable","display_name":"Executable","score":0.5753885507583618},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5744297504425049},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.5459893345832825},{"id":"https://openalex.org/keywords/estimator","display_name":"Estimator","score":0.45757389068603516},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3499196767807007},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20541417598724365},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.17942646145820618},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1486077606678009},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.12520849704742432},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.11293327808380127}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6554678082466125},{"id":"https://openalex.org/C160145156","wikidata":"https://www.wikidata.org/wiki/Q778586","display_name":"Executable","level":2,"score":0.5753885507583618},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5744297504425049},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.5459893345832825},{"id":"https://openalex.org/C185429906","wikidata":"https://www.wikidata.org/wiki/Q1130160","display_name":"Estimator","level":2,"score":0.45757389068603516},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3499196767807007},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20541417598724365},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.17942646145820618},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1486077606678009},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.12520849704742432},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.11293327808380127},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btx085","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx085","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/12/1889/25155547/btx085.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28186245","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28186245","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:www.research.unipd.it:11577/3230597","is_oa":false,"landing_page_url":"http://hdl.handle.net/11577/3230597","pdf_url":null,"source":{"id":"https://openalex.org/S4306402547","display_name":"Padua Research Archive (University of Padova)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138689650","host_organization_name":"University of Padua","host_organization_lineage":["https://openalex.org/I138689650"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:zenodo.org:100839","is_oa":true,"landing_page_url":"https://www.openaccessrepository.it/record/100839","pdf_url":null,"source":{"id":"https://openalex.org/S4306402478","display_name":"INFM-OAR (INFN Catania)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210116497","host_organization_name":"Istituto Nazionale di Fisica Nucleare, Sezione di Catania","host_organization_lineage":["https://openalex.org/I4210116497"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btx085","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx085","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/12/1889/25155547/btx085.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320312368","display_name":"Associazione Angela Serra per la Ricerca sul Cancro","ror":"https://ror.org/028w1rx89"},{"id":"https://openalex.org/F4320324143","display_name":"Fondazione Italiana per la Ricerca sul Cancro","ror":"https://ror.org/02g2x7380"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2587402318.pdf","grobid_xml":"https://content.openalex.org/works/W2587402318.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W1513332069","https://openalex.org/W1963550288","https://openalex.org/W1971024387","https://openalex.org/W1971147414","https://openalex.org/W1996413533","https://openalex.org/W2001297798","https://openalex.org/W2045184505","https://openalex.org/W2068026673","https://openalex.org/W2076742999","https://openalex.org/W2080831965","https://openalex.org/W2128705810","https://openalex.org/W2156465034","https://openalex.org/W2396676392","https://openalex.org/W2519625972","https://openalex.org/W2558841060"],"related_works":["https://openalex.org/W2350278424","https://openalex.org/W2071432835","https://openalex.org/W4299534542","https://openalex.org/W1628824497","https://openalex.org/W4239401009","https://openalex.org/W2053441600","https://openalex.org/W1990401748","https://openalex.org/W2141018266","https://openalex.org/W2143252774","https://openalex.org/W1520634300"],"abstract_inverted_index":{"MOTIVATION:":[0],"The":[1,105,129,139],"behavior":[2,37],"of":[3,38,52,60,93,123,152],"a":[4,45,49,102,120],"protein":[5,53,71],"is":[6,97,133],"encoded":[7],"in":[8],"its":[9],"sequence,":[10],"which":[11],"can":[12,32,156],"be":[13,157],"used":[14],"to":[15,65,100],"predict":[16],"distinct":[17],"features":[18,31,68],"such":[19],"as":[20,81,83],"secondary":[21,94],"structure,":[22],"intrinsic":[23],"disorder":[24],"or":[25],"amphipathicity.":[26,88],"Integrating":[27],"these":[28],"and":[29,77,113],"other":[30],"help":[33],"explain":[34],"the":[35,70],"context-dependent":[36],"proteins.":[39],"However,":[40],"most":[41],"tools":[42],"focus":[43],"on":[44],"single":[46],"aspect,":[47],"hampering":[48],"holistic":[50],"understanding":[51],"structure.":[54],"Here,":[55],"we":[56],"present":[57],"Fast":[58],"Estimator":[59],"Latent":[61],"Local":[62],"Structure":[63],"(FELLS)":[64],"visualize":[66],"structural":[67],"from":[69,135,159],"sequence.":[72],"FELLS":[73,109,130],"provides":[74],"disorder,":[75],"aggregation":[76],"low":[78],"complexity":[79],"predictions":[80],"well":[82],"estimated":[84],"local":[85],"propensities":[86],"including":[87],"A":[89],"novel":[90],"fast":[91,103,112],"estimator":[92],"structure":[95],"(FESS)":[96],"also":[98,141],"trained":[99],"provide":[101],"response.":[104],"calculations":[106],"required":[107],"for":[108,115,154],"are":[110,168],"extremely":[111],"suited":[114],"large-scale":[116],"analysis":[117,122],"while":[118],"providing":[119],"detailed":[121],"difficult":[124],"cases.":[125],"AVAILABILITY":[126],"AND":[127],"IMPLEMENTATION:":[128],"web":[131],"server":[132,140],"available":[134,169],"URL:":[136,160],"http://protein.bio.unipd.it/fells/":[137],".":[138],"exposes":[142],"RESTful":[143],"functionality":[144],"allowing":[145],"programmatic":[146],"prediction":[147],"requests.":[148],"An":[149],"executable":[150],"version":[151],"FESS":[153],"Linux":[155],"downloaded":[158],"protein.bio.unipd.it/download/.":[161],"CONTACT:":[162],"silvio.tosatto@unipd.it.":[163],"SUPPLEMENTARY":[164],"INFORMATION:":[165],"Supplementary":[166],"data":[167],"at":[170],"Bioinformatics":[171],"online.":[172]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":16},{"year":2019,"cited_by_count":9},{"year":2018,"cited_by_count":11},{"year":2017,"cited_by_count":3}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
