{"id":"https://openalex.org/W2952379095","doi":"https://doi.org/10.1093/bioinformatics/btx067","title":"Succinct colored de Bruijn graphs","display_name":"Succinct colored de Bruijn graphs","publication_year":2017,"publication_date":"2017-02-14","ids":{"openalex":"https://openalex.org/W2952379095","doi":"https://doi.org/10.1093/bioinformatics/btx067","mag":"2952379095","pmid":"https://pubmed.ncbi.nlm.nih.gov/28200001"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btx067","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx067","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/20/3181/25165624/btx067.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/33/20/3181/25165624/btx067.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051938425","display_name":"Martin D. Muggli","orcid":"https://orcid.org/0000-0002-9283-0049"},"institutions":[{"id":"https://openalex.org/I92446798","display_name":"Colorado State University","ror":"https://ror.org/03k1gpj17","country_code":"US","type":"education","lineage":["https://openalex.org/I92446798"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Martin D Muggli","raw_affiliation_strings":["Department of Computer Science, Colorado State University, Fort Collins, CO, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Colorado State University, Fort Collins, CO, USA","institution_ids":["https://openalex.org/I92446798"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082152165","display_name":"Alexander Bowe","orcid":null},"institutions":[{"id":"https://openalex.org/I184597095","display_name":"National Institute of Informatics","ror":"https://ror.org/04ksd4g47","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I184597095","https://openalex.org/I4210158934"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Alexander Bowe","raw_affiliation_strings":["Department of Informatics, National Institute of Informatics, Chiyoda-ku, Tokyo, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Informatics, National Institute of Informatics, Chiyoda-ku, Tokyo, Japan","institution_ids":["https://openalex.org/I184597095"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004104922","display_name":"Noelle Noyes","orcid":"https://orcid.org/0000-0001-6149-1008"},"institutions":[{"id":"https://openalex.org/I92446798","display_name":"Colorado State University","ror":"https://ror.org/03k1gpj17","country_code":"US","type":"education","lineage":["https://openalex.org/I92446798"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Noelle R Noyes","raw_affiliation_strings":["Department of Clinical Sciences, Colorado State University, Fort Collins, CO, USA"],"affiliations":[{"raw_affiliation_string":"Department of Clinical Sciences, Colorado State University, Fort Collins, CO, USA","institution_ids":["https://openalex.org/I92446798"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005574134","display_name":"Paul S. Morley","orcid":"https://orcid.org/0000-0001-8138-2714"},"institutions":[{"id":"https://openalex.org/I92446798","display_name":"Colorado State University","ror":"https://ror.org/03k1gpj17","country_code":"US","type":"education","lineage":["https://openalex.org/I92446798"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paul S Morley","raw_affiliation_strings":["Department of Clinical Sciences, Colorado State University, Fort Collins, CO, USA"],"affiliations":[{"raw_affiliation_string":"Department of Clinical Sciences, Colorado State University, Fort Collins, CO, USA","institution_ids":["https://openalex.org/I92446798"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006949356","display_name":"K. E. Belk","orcid":"https://orcid.org/0000-0002-7171-8824"},"institutions":[{"id":"https://openalex.org/I92446798","display_name":"Colorado State University","ror":"https://ror.org/03k1gpj17","country_code":"US","type":"education","lineage":["https://openalex.org/I92446798"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Keith E Belk","raw_affiliation_strings":["Department of Animal Sciences, Colorado State University, Fort Collins, CO, USA"],"affiliations":[{"raw_affiliation_string":"Department of Animal Sciences, Colorado State University, Fort Collins, CO, USA","institution_ids":["https://openalex.org/I92446798"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003089452","display_name":"Robert A. Raymond","orcid":null},"institutions":[{"id":"https://openalex.org/I92446798","display_name":"Colorado State University","ror":"https://ror.org/03k1gpj17","country_code":"US","type":"education","lineage":["https://openalex.org/I92446798"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert Raymond","raw_affiliation_strings":["Department of Computer Science, Colorado State University, Fort Collins, CO, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Colorado State University, Fort Collins, CO, USA","institution_ids":["https://openalex.org/I92446798"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013172801","display_name":"Travis Gagie","orcid":"https://orcid.org/0000-0003-3689-327X"},"institutions":[{"id":"https://openalex.org/I911713783","display_name":"Diego Portales University","ror":"https://ror.org/03gtdcg60","country_code":"CL","type":"education","lineage":["https://openalex.org/I911713783"]}],"countries":["CL"],"is_corresponding":false,"raw_author_name":"Travis Gagie","raw_affiliation_strings":["School of Computer Science and Telecommunications, Diego Portales University and CEBIB, Santiago, Chile"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Telecommunications, Diego Portales University and CEBIB, Santiago, Chile","institution_ids":["https://openalex.org/I911713783"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021097696","display_name":"Simon J. Puglisi","orcid":"https://orcid.org/0000-0001-7668-7636"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Simon J Puglisi","raw_affiliation_strings":["Department of Computer Science, University of Helsinki, Helsinki, Finland"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Helsinki, Helsinki, Finland","institution_ids":["https://openalex.org/I133731052"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059638281","display_name":"Christina Boucher","orcid":"https://orcid.org/0000-0001-5617-7495"},"institutions":[{"id":"https://openalex.org/I92446798","display_name":"Colorado State University","ror":"https://ror.org/03k1gpj17","country_code":"US","type":"education","lineage":["https://openalex.org/I92446798"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christina Boucher","raw_affiliation_strings":["Department of Computer Science, Colorado State University, Fort Collins, CO, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Colorado State University, Fort Collins, CO, USA","institution_ids":["https://openalex.org/I92446798"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5051938425"],"corresponding_institution_ids":["https://openalex.org/I92446798"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":13.5005,"has_fulltext":false,"cited_by_count":130,"citation_normalized_percentile":{"value":0.98981004,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"33","issue":"20","first_page":"3181","last_page":"3187"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.988099992275238,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.988099992275238,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9523000121116638,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10374","display_name":"Advanced Graph Theory Research","score":0.9298999905586243,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/de-bruijn-sequence","display_name":"De Bruijn sequence","score":0.8036080598831177},{"id":"https://openalex.org/keywords/colored","display_name":"Colored","score":0.6119983196258545},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5913340449333191},{"id":"https://openalex.org/keywords/de-bruijn-graph","display_name":"De Bruijn graph","score":0.5370648503303528},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.2987156808376312},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2869065999984741},{"id":"https://openalex.org/keywords/sociology","display_name":"Sociology","score":0.06014224886894226}],"concepts":[{"id":"https://openalex.org/C170320093","wikidata":"https://www.wikidata.org/wiki/Q1953457","display_name":"De Bruijn sequence","level":2,"score":0.8036080598831177},{"id":"https://openalex.org/C2778307483","wikidata":"https://www.wikidata.org/wiki/Q5149038","display_name":"Colored","level":2,"score":0.6119983196258545},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5913340449333191},{"id":"https://openalex.org/C20218877","wikidata":"https://www.wikidata.org/wiki/Q3066095","display_name":"De Bruijn graph","level":3,"score":0.5370648503303528},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.2987156808376312},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2869065999984741},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.06014224886894226},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056890","descriptor_name":"Eukaryota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D056890","descriptor_name":"Eukaryota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D056890","descriptor_name":"Eukaryota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D056890","descriptor_name":"Eukaryota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060005","descriptor_name":"Genotyping Techniques","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D060005","descriptor_name":"Genotyping Techniques","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D060005","descriptor_name":"Genotyping Techniques","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D060005","descriptor_name":"Genotyping Techniques","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btx067","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx067","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/20/3181/25165624/btx067.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28200001","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28200001","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:5130097","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5872255","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btx067","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx067","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/20/3181/25165624/btx067.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.49000000953674316,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G1148951491","display_name":null,"funder_award_id":"268324","funder_id":"https://openalex.org/F4320321108","funder_display_name":"Academy of Finland"},{"id":"https://openalex.org/G1772331958","display_name":null,"funder_award_id":"294143","funder_id":"https://openalex.org/F4320321108","funder_display_name":"Academy of Finland"}],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320321108","display_name":"Academy of Finland","ror":"https://ror.org/05k73zm37"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2952379095.pdf","grobid_xml":"https://content.openalex.org/works/W2952379095.grobid-xml"},"referenced_works_count":46,"referenced_works":["https://openalex.org/W6247929","https://openalex.org/W616987689","https://openalex.org/W1921457844","https://openalex.org/W1949346071","https://openalex.org/W1964377951","https://openalex.org/W1966822396","https://openalex.org/W1971987634","https://openalex.org/W1974033543","https://openalex.org/W1976049389","https://openalex.org/W2003979986","https://openalex.org/W2010361633","https://openalex.org/W2014704298","https://openalex.org/W2022910024","https://openalex.org/W2028553878","https://openalex.org/W2039618894","https://openalex.org/W2041391522","https://openalex.org/W2050820276","https://openalex.org/W2057223122","https://openalex.org/W2104914423","https://openalex.org/W2105656684","https://openalex.org/W2113679889","https://openalex.org/W2117383593","https://openalex.org/W2122316710","https://openalex.org/W2125266506","https://openalex.org/W2127901812","https://openalex.org/W2131271579","https://openalex.org/W2133531097","https://openalex.org/W2141920662","https://openalex.org/W2144383149","https://openalex.org/W2148286579","https://openalex.org/W2152586491","https://openalex.org/W2159647614","https://openalex.org/W2162161835","https://openalex.org/W2167865654","https://openalex.org/W2278452282","https://openalex.org/W2295502830","https://openalex.org/W2311275990","https://openalex.org/W2484547301","https://openalex.org/W2517241835","https://openalex.org/W4247794781","https://openalex.org/W6600251720","https://openalex.org/W6641128955","https://openalex.org/W6641399295","https://openalex.org/W6643013652","https://openalex.org/W6677025215","https://openalex.org/W6698782526"],"related_works":["https://openalex.org/W2562683361","https://openalex.org/W3087469195","https://openalex.org/W2354744388","https://openalex.org/W3125399386","https://openalex.org/W2949121831","https://openalex.org/W3215786367","https://openalex.org/W1908987670","https://openalex.org/W2756186577","https://openalex.org/W2735897904","https://openalex.org/W3021341025"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":20},{"year":2021,"cited_by_count":20},{"year":2020,"cited_by_count":22},{"year":2019,"cited_by_count":22},{"year":2018,"cited_by_count":12},{"year":2017,"cited_by_count":8}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}