{"id":"https://openalex.org/W2569834758","doi":"https://doi.org/10.1093/bioinformatics/btw767","title":"Cross-React: a new structural bioinformatics method for predicting allergen cross-reactivity","display_name":"Cross-React: a new structural bioinformatics method for predicting allergen cross-reactivity","publication_year":2016,"publication_date":"2016-12-02","ids":{"openalex":"https://openalex.org/W2569834758","doi":"https://doi.org/10.1093/bioinformatics/btw767","mag":"2569834758","pmid":"https://pubmed.ncbi.nlm.nih.gov/28062447"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btw767","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw767","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/7/1014/25149905/btw767.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/33/7/1014/25149905/btw767.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5114124591","display_name":"Surendra S. Negi","orcid":null},"institutions":[{"id":"https://openalex.org/I55302922","display_name":"The University of Texas Medical Branch at Galveston","ror":"https://ror.org/016tfm930","country_code":"US","type":"education","lineage":["https://openalex.org/I55302922"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Surendra S Negi","raw_affiliation_strings":["Sealy Center for Structural Biology and Molecular Biophysics, Department of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sealy Center for Structural Biology and Molecular Biophysics, Department of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX, USA","institution_ids":["https://openalex.org/I55302922"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043184951","display_name":"Werner Braun","orcid":"https://orcid.org/0000-0002-7581-168X"},"institutions":[{"id":"https://openalex.org/I55302922","display_name":"The University of Texas Medical Branch at Galveston","ror":"https://ror.org/016tfm930","country_code":"US","type":"education","lineage":["https://openalex.org/I55302922"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Werner Braun","raw_affiliation_strings":["Sealy Center for Structural Biology and Molecular Biophysics, Department of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sealy Center for Structural Biology and Molecular Biophysics, Department of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX, USA","institution_ids":["https://openalex.org/I55302922"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5114124591"],"corresponding_institution_ids":["https://openalex.org/I55302922"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.2188,"has_fulltext":false,"cited_by_count":45,"citation_normalized_percentile":{"value":0.8122501,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"33","issue":"7","first_page":"1014","last_page":"1020"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.6197999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.6197999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10634","display_name":"Food Allergy and Anaphylaxis Research","score":0.12049999833106995,"subfield":{"id":"https://openalex.org/subfields/2723","display_name":"Immunology and Allergy"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10877","display_name":"Allergic Rhinitis and Sensitization","score":0.093299999833107,"subfield":{"id":"https://openalex.org/subfields/2723","display_name":"Immunology and Allergy"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cross-reactivity","display_name":"Cross-reactivity","score":0.9378100633621216},{"id":"https://openalex.org/keywords/allergen","display_name":"Allergen","score":0.7129845023155212},{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.640580952167511},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6163735389709473},{"id":"https://openalex.org/keywords/cross-reactions","display_name":"Cross reactions","score":0.5689575672149658},{"id":"https://openalex.org/keywords/reactivity","display_name":"Reactivity (psychology)","score":0.5223823189735413},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4980509281158447},{"id":"https://openalex.org/keywords/antigenicity","display_name":"Antigenicity","score":0.45475685596466064},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.4251287579536438},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.4177699089050293},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.40334054827690125},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.37765926122665405},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.36976146697998047},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.3554123640060425},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3280344009399414},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2879750728607178},{"id":"https://openalex.org/keywords/allergy","display_name":"Allergy","score":0.25295543670654297},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.14809462428092957}],"concepts":[{"id":"https://openalex.org/C2779142602","wikidata":"https://www.wikidata.org/wiki/Q1760689","display_name":"Cross-reactivity","level":4,"score":0.9378100633621216},{"id":"https://openalex.org/C2780510475","wikidata":"https://www.wikidata.org/wiki/Q186752","display_name":"Allergen","level":3,"score":0.7129845023155212},{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.640580952167511},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6163735389709473},{"id":"https://openalex.org/C3020064264","wikidata":"https://www.wikidata.org/wiki/Q1760689","display_name":"Cross reactions","level":3,"score":0.5689575672149658},{"id":"https://openalex.org/C2776910235","wikidata":"https://www.wikidata.org/wiki/Q18574","display_name":"Reactivity (psychology)","level":3,"score":0.5223823189735413},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4980509281158447},{"id":"https://openalex.org/C2779026604","wikidata":"https://www.wikidata.org/wiki/Q4774742","display_name":"Antigenicity","level":3,"score":0.45475685596466064},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.4251287579536438},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.4177699089050293},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.40334054827690125},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.37765926122665405},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.36976146697998047},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.3554123640060425},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3280344009399414},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2879750728607178},{"id":"https://openalex.org/C207480886","wikidata":"https://www.wikidata.org/wiki/Q42982","display_name":"Allergy","level":2,"score":0.25295543670654297},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.14809462428092957},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000485","descriptor_name":"Allergens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000485","descriptor_name":"Allergens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000485","descriptor_name":"Allergens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000485","descriptor_name":"Allergens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000485","descriptor_name":"Allergens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000485","descriptor_name":"Allergens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001516","descriptor_name":"Bees","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001516","descriptor_name":"Bees","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001516","descriptor_name":"Bees","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003429","descriptor_name":"Cross Reactions","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D003429","descriptor_name":"Cross Reactions","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D003429","descriptor_name":"Cross Reactions","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018360","descriptor_name":"Crystallography, X-Ray","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018360","descriptor_name":"Crystallography, X-Ray","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018360","descriptor_name":"Crystallography, X-Ray","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btw767","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw767","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/7/1014/25149905/btw767.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28062447","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28062447","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:5860227","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5860227","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btw767","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw767","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/7/1014/25149905/btw767.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5504001127","display_name":null,"funder_award_id":"(R21 AI1090909)","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7268807181","display_name":null,"funder_award_id":"(No. RD834823)","funder_id":"https://openalex.org/F4320306107","funder_display_name":"U.S. Environmental Protection Agency"},{"id":"https://openalex.org/G8373540316","display_name":null,"funder_award_id":"(No. RD834823)","funder_id":"https://openalex.org/F4320308021","funder_display_name":"California Environmental Protection Agency"},{"id":"https://openalex.org/G8422118772","display_name":null,"funder_award_id":"R21 AI109090","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"}],"funders":[{"id":"https://openalex.org/F4320306107","display_name":"U.S. Environmental Protection Agency","ror":"https://ror.org/03tns0030"},{"id":"https://openalex.org/F4320308021","display_name":"California Environmental Protection Agency","ror":"https://ror.org/02gkqqp86"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":77,"referenced_works":["https://openalex.org/W128900217","https://openalex.org/W1532202009","https://openalex.org/W1548632952","https://openalex.org/W1780900583","https://openalex.org/W1789167748","https://openalex.org/W1869212877","https://openalex.org/W1964988755","https://openalex.org/W1966576635","https://openalex.org/W1971246568","https://openalex.org/W1973000863","https://openalex.org/W1973153577","https://openalex.org/W1973581737","https://openalex.org/W1976801077","https://openalex.org/W1977911529","https://openalex.org/W1978013324","https://openalex.org/W1979856449","https://openalex.org/W1981031577","https://openalex.org/W1981176433","https://openalex.org/W1993940964","https://openalex.org/W2001130582","https://openalex.org/W2001803927","https://openalex.org/W2003451882","https://openalex.org/W2006466005","https://openalex.org/W2013594225","https://openalex.org/W2019020314","https://openalex.org/W2023037761","https://openalex.org/W2029379074","https://openalex.org/W2031243237","https://openalex.org/W2031854599","https://openalex.org/W2032226763","https://openalex.org/W2035014358","https://openalex.org/W2036742773","https://openalex.org/W2042030551","https://openalex.org/W2042492527","https://openalex.org/W2042725697","https://openalex.org/W2051192721","https://openalex.org/W2054989562","https://openalex.org/W2070344586","https://openalex.org/W2070360032","https://openalex.org/W2070841367","https://openalex.org/W2072691313","https://openalex.org/W2076854311","https://openalex.org/W2079208358","https://openalex.org/W2081384426","https://openalex.org/W2085540738","https://openalex.org/W2092258950","https://openalex.org/W2093607407","https://openalex.org/W2098419338","https://openalex.org/W2099057076","https://openalex.org/W2110298304","https://openalex.org/W2110862352","https://openalex.org/W2111876811","https://openalex.org/W2117747975","https://openalex.org/W2117764478","https://openalex.org/W2118943119","https://openalex.org/W2122719813","https://openalex.org/W2130606742","https://openalex.org/W2130887658","https://openalex.org/W2132449251","https://openalex.org/W2133438399","https://openalex.org/W2138554472","https://openalex.org/W2142564954","https://openalex.org/W2143586041","https://openalex.org/W2147354840","https://openalex.org/W2149984099","https://openalex.org/W2152326664","https://openalex.org/W2157876150","https://openalex.org/W2158714788","https://openalex.org/W2160397907","https://openalex.org/W2168518560","https://openalex.org/W2169304715","https://openalex.org/W2200927257","https://openalex.org/W2411440203","https://openalex.org/W2749679400","https://openalex.org/W4250721369","https://openalex.org/W6605274459","https://openalex.org/W6631698885"],"related_works":["https://openalex.org/W4226426339","https://openalex.org/W2569834758","https://openalex.org/W2088879647","https://openalex.org/W2178175538","https://openalex.org/W431646698","https://openalex.org/W2473006977","https://openalex.org/W3177801889","https://openalex.org/W2147354840","https://openalex.org/W2069649824","https://openalex.org/W4391221448"],"abstract_inverted_index":{"The":[0],"phenomenon":[1],"of":[2,66,101,120,144],"cross-reactivity":[3,59,67,92],"between":[4,60,68,93],"allergenic":[5,61,94],"proteins":[6,22,41,95],"plays":[7],"an":[8,129],"important":[9],"role":[10],"to":[11,25,57,73,90,128,140,155,165,182],"understand":[12],"how":[13],"the":[14,40,64,98,109,137],"immune":[15],"system":[16],"recognizes":[17],"different":[18],"antigen":[19],"proteins.":[20,62],"Allergen":[21],"are":[23,54],"known":[24,133],"cross-react":[26],"if":[27],"their":[28],"sequence":[29,34,51,157],"comparison":[30],"shows":[31],"a":[32,43,75,84,132,141,179],"high":[33,154],"identity":[35,158],"which":[36,159],"also":[37,161],"implies":[38],"that":[39,111,173],"have":[42,160],"similar":[44,127],"3D":[45,118],"fold.":[46],"In":[47],"such":[48],"cases,":[49],"linear":[50],"alignment":[52],"methods":[53],"frequently":[55],"used":[56,177],"predict":[58,91],"However,":[63],"prediction":[65],"distantly":[69],"related":[70],"allergens":[71,122,152],"continues":[72],"be":[74,176],"challenging":[76],"task.":[77],"To":[78],"overcome":[79],"this":[80],"problem,":[81],"we":[82,112,171],"developed":[83],"new":[85],"structure-based":[86],"computational":[87],"method,":[88],"Cross-React,":[89],"available":[96,194],"in":[97,131],"Structural":[99],"Database":[100],"Allergens":[102],"(SDAP).":[103],"Our":[104],"method":[105,139],"is":[106,193],"based":[107],"on":[108,117,168],"hypothesis":[110],"can":[113,175],"find":[114],"surface":[115],"patches":[116],"structures":[119],"potential":[121],"with":[123,153],"amino":[124],"acid":[125],"compositions":[126],"epitope":[130],"allergen.":[134],"We":[135],"applied":[136],"Cross-React":[138,174,192],"diverse":[142],"set":[143],"seven":[145],"allergens,":[146],"and":[147,186,189],"successfully":[148],"identified":[149],"several":[150],"cross-reactive":[151],"moderate":[156],"been":[162],"experimentally":[163],"shown":[164],"cross-react.":[166],"Based":[167],"these":[169],"findings,":[170],"suggest":[172],"as":[178],"predictive":[180],"tool":[181],"assess":[183],"protein":[184],"allergenicity":[185],"cross-reactivity.":[187],"Availability":[188],"Implementation:":[190],":":[191],"at:":[195],"http://curie.utmb.edu/Cross-React.html.":[196],"Contact:":[197],"ssnegi@utmb.edu.":[198]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":3}],"updated_date":"2026-06-25T08:15:23.626066","created_date":"2025-10-10T00:00:00"}
