{"id":"https://openalex.org/W2568671473","doi":"https://doi.org/10.1093/bioinformatics/btw759","title":"DNABarcodes: an R package for the systematic construction of DNA sample tags","display_name":"DNABarcodes: an R package for the systematic construction of DNA sample tags","publication_year":2016,"publication_date":"2016-11-25","ids":{"openalex":"https://openalex.org/W2568671473","doi":"https://doi.org/10.1093/bioinformatics/btw759","mag":"2568671473","pmid":"https://pubmed.ncbi.nlm.nih.gov/28052927"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btw759","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw759","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/6/920/25147954/btw759.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/33/6/920/25147954/btw759.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067466785","display_name":"Tilo Buschmann","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Tilo Buschmann","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5067466785"],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.3926,"has_fulltext":false,"cited_by_count":53,"citation_normalized_percentile":{"value":0.82801421,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"33","issue":"6","first_page":"920","last_page":"922"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.2818000018596649,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.2818000018596649,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.14730000495910645,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.08100000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.6925020813941956},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.56260085105896},{"id":"https://openalex.org/keywords/sample","display_name":"Sample (material)","score":0.5335681438446045},{"id":"https://openalex.org/keywords/software-package","display_name":"Software package","score":0.5085607767105103},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.4552612900733948},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4146682918071747},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.35050714015960693},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3210374712944031},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24368655681610107},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24057573080062866},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.13820672035217285},{"id":"https://openalex.org/keywords/chromatography","display_name":"Chromatography","score":0.07969620823860168}],"concepts":[{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.6925020813941956},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.56260085105896},{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.5335681438446045},{"id":"https://openalex.org/C3020440742","wikidata":"https://www.wikidata.org/wiki/Q1176855","display_name":"Software package","level":3,"score":0.5085607767105103},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.4552612900733948},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4146682918071747},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.35050714015960693},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3210374712944031},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24368655681610107},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24057573080062866},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.13820672035217285},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.07969620823860168}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058893","descriptor_name":"DNA Barcoding, Taxonomic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058893","descriptor_name":"DNA Barcoding, Taxonomic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058893","descriptor_name":"DNA Barcoding, Taxonomic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btw759","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw759","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/6/920/25147954/btw759.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28052927","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28052927","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:publica.fraunhofer.de:publica/248488","is_oa":false,"landing_page_url":"https://publica.fraunhofer.de/handle/publica/248488","pdf_url":null,"source":{"id":"https://openalex.org/S4306400318","display_name":"Fraunhofer-Publica (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btw759","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw759","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/6/920/25147954/btw759.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Reduced inequalities","id":"https://metadata.un.org/sdg/10","score":0.6899999976158142}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2568671473.pdf"},"referenced_works_count":7,"referenced_works":["https://openalex.org/W1909638271","https://openalex.org/W1983476363","https://openalex.org/W2003342954","https://openalex.org/W2009039142","https://openalex.org/W2074735241","https://openalex.org/W2099479910","https://openalex.org/W2147634297"],"related_works":["https://openalex.org/W4389426664","https://openalex.org/W2566205467","https://openalex.org/W3012616639","https://openalex.org/W3126000805","https://openalex.org/W3198565742","https://openalex.org/W2010064959","https://openalex.org/W2157390150","https://openalex.org/W2119742499","https://openalex.org/W1985266044","https://openalex.org/W4387011503"],"abstract_inverted_index":{"Motivation:":[0],"DNA":[1,20,74,113],"barcodes":[2,75,114],"are":[3,169],"commonly":[4],"used":[5],"for":[6,25,33,55,137],"counting":[7],"and":[8,13,52,59,131,142,147],"discriminating":[9],"purposes":[10],"in":[11,99],"molecular":[12],"cell":[14],"biology.":[15],"Not":[16],"every":[17],"set":[18,144],"of":[19,62,73,94,103,112,120,122],"sequences":[21],"is":[22,29,153],"equally":[23],"suitable":[24],"this":[26],"goal.":[27],"There":[28],"a":[30,77],"growing":[31],"demand":[32],"more":[34],"sophisticated":[35],"barcode":[36,64],"designs,":[37],"with":[38],"only":[39],"few":[40,78],"tools":[41],"available.":[42],"We":[43],"prepared":[44],"an":[45],"R":[46,151],"package":[47,69,107,152],"that":[48],"combines":[49],"known":[50],"algorithms":[51],"innovative":[53],"methods":[54],"the":[56,92,106,118,160],"efficient,":[57],"flexible":[58],"near-optimal":[60],"generation":[61,119],"robust":[63],"sets.":[65],"Results:":[66],"Our":[67],"R-software":[68],"'DNABarcodes'":[70,134],"generates":[71],"sets":[72,111,125],"from":[76,155],"basic":[79],"input":[80],"parameters":[81],"(e.g.":[82],"length,":[83],"distance":[84],"metric,":[85],"minimum":[86],"distance,":[87],"chemical":[88],"properties).":[89],"It":[90],"satisfies":[91],"specifics":[93],"most":[95],"particular":[96],"experimental":[97],"demands":[98],"de":[100],"novo":[101],"design":[102],"barcodes.":[104],"Additionally,":[105],"allows":[108],"analysing":[109],"existing":[110,124],"as":[115,117],"well":[116],"subsets":[121],"those":[123],"to":[126],"improve":[127],"their":[128],"error":[129],"correction":[130],"detection":[132],"properties.":[133],"was":[135],"designed":[136],"speed,":[138],"versatility,":[139],"provable":[140],"correctness":[141],"large":[143],"sizes.":[145],"Availability":[146],"Implementation:":[148],"The":[149],"DNABarcodes":[150],"available":[154,170],"Bioconductor":[156],"at":[157,171],"http://bioconductor.org/packages/DNABarcodes":[158],"under":[159],"GPL-2":[161],"license.":[162],"Contact:":[163],"tilo.buschmann@izi.fraunhofer.de.":[164],"Supplementary":[165,167],"information:":[166],"data":[168],"Bioinformatics":[172],"online.":[173]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":15},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":2}],"updated_date":"2026-05-22T06:13:13.366637","created_date":"2025-10-10T00:00:00"}
