{"id":"https://openalex.org/W2604172945","doi":"https://doi.org/10.1093/bioinformatics/btw739","title":"Green listed\u2014a CRISPR screen tool","display_name":"Green listed\u2014a CRISPR screen tool","publication_year":2016,"publication_date":"2016-11-19","ids":{"openalex":"https://openalex.org/W2604172945","doi":"https://doi.org/10.1093/bioinformatics/btw739","mag":"2604172945","pmid":"https://pubmed.ncbi.nlm.nih.gov/28414855"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btw739","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw739","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/7/1099/25149811/btw739.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/33/7/1099/25149811/btw739.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020622451","display_name":"Sudeepta Kumar Panda","orcid":"https://orcid.org/0000-0001-7903-9255"},"institutions":[{"id":"https://openalex.org/I1335113835","display_name":"Karolinska University Hospital","ror":"https://ror.org/00m8d6786","country_code":"SE","type":"healthcare","lineage":["https://openalex.org/I1335113835"]},{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Sudeepta Kumar Panda","raw_affiliation_strings":["Department of Medicine, Solna, Karolinska Institutet, and Karolinska University Hospital, Stockholm, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine, Solna, Karolinska Institutet, and Karolinska University Hospital, Stockholm, Sweden","institution_ids":["https://openalex.org/I1335113835","https://openalex.org/I28166907"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000560213","display_name":"Sanjay V. Boddul","orcid":null},"institutions":[{"id":"https://openalex.org/I1335113835","display_name":"Karolinska University Hospital","ror":"https://ror.org/00m8d6786","country_code":"SE","type":"healthcare","lineage":["https://openalex.org/I1335113835"]},{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Sanjay V Boddul","raw_affiliation_strings":["Department of Medicine, Solna, Karolinska Institutet, and Karolinska University Hospital, Stockholm, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine, Solna, Karolinska Institutet, and Karolinska University Hospital, Stockholm, Sweden","institution_ids":["https://openalex.org/I1335113835","https://openalex.org/I28166907"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016253222","display_name":"Guillermina Yanek Jim\u00e9nez-Andrade","orcid":null},"institutions":[{"id":"https://openalex.org/I1335113835","display_name":"Karolinska University Hospital","ror":"https://ror.org/00m8d6786","country_code":"SE","type":"healthcare","lineage":["https://openalex.org/I1335113835"]},{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Guillermina Yanek Jim\u00e9nez-Andrade","raw_affiliation_strings":["Department of Medicine, Solna, Karolinska Institutet, and Karolinska University Hospital, Stockholm, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine, Solna, Karolinska Institutet, and Karolinska University Hospital, Stockholm, Sweden","institution_ids":["https://openalex.org/I1335113835","https://openalex.org/I28166907"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089606999","display_name":"Long Jiang","orcid":"https://orcid.org/0000-0002-8720-8992"},"institutions":[{"id":"https://openalex.org/I1335113835","display_name":"Karolinska University Hospital","ror":"https://ror.org/00m8d6786","country_code":"SE","type":"healthcare","lineage":["https://openalex.org/I1335113835"]},{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Long Jiang","raw_affiliation_strings":["Department of Medicine, Solna, Karolinska Institutet, and Karolinska University Hospital, Stockholm, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine, Solna, Karolinska Institutet, and Karolinska University Hospital, Stockholm, Sweden","institution_ids":["https://openalex.org/I1335113835","https://openalex.org/I28166907"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018309136","display_name":"Zsolt Kasza","orcid":"https://orcid.org/0000-0003-0884-9562"},"institutions":[{"id":"https://openalex.org/I1335113835","display_name":"Karolinska University Hospital","ror":"https://ror.org/00m8d6786","country_code":"SE","type":"healthcare","lineage":["https://openalex.org/I1335113835"]},{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Zsolt Kasza","raw_affiliation_strings":["Department of Medicine, Solna, Karolinska Institutet, and Karolinska University Hospital, Stockholm, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine, Solna, Karolinska Institutet, and Karolinska University Hospital, Stockholm, Sweden","institution_ids":["https://openalex.org/I1335113835","https://openalex.org/I28166907"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069507704","display_name":"Luciano Fernandez-Ricaud","orcid":"https://orcid.org/0000-0003-4799-4084"},"institutions":[{"id":"https://openalex.org/I881427289","display_name":"University of Gothenburg","ror":"https://ror.org/01tm6cn81","country_code":"SE","type":"education","lineage":["https://openalex.org/I881427289"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Luciano Fernandez-Ricaud","raw_affiliation_strings":["Department of Marine Sciences, Lundberg Laboratory, University of Gothenburg, Gothenburg, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Marine Sciences, Lundberg Laboratory, University of Gothenburg, Gothenburg, Sweden","institution_ids":["https://openalex.org/I881427289"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006790660","display_name":"Fredrik Wermeling","orcid":"https://orcid.org/0000-0001-9633-677X"},"institutions":[{"id":"https://openalex.org/I1335113835","display_name":"Karolinska University Hospital","ror":"https://ror.org/00m8d6786","country_code":"SE","type":"healthcare","lineage":["https://openalex.org/I1335113835"]},{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]}],"countries":["SE"],"is_corresponding":true,"raw_author_name":"Fredrik Wermeling","raw_affiliation_strings":["Department of Medicine, Solna, Karolinska Institutet, and Karolinska University Hospital, Stockholm, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine, Solna, Karolinska Institutet, and Karolinska University Hospital, Stockholm, Sweden","institution_ids":["https://openalex.org/I1335113835","https://openalex.org/I28166907"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5006790660"],"corresponding_institution_ids":["https://openalex.org/I1335113835","https://openalex.org/I28166907"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.3482,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.70208358,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"33","issue":"7","first_page":"1099","last_page":"1100"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.91839998960495,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.91839998960495,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12561","display_name":"bioluminescence and chemiluminescence research","score":0.0066999997943639755,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.0066999997943639755,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/crispr","display_name":"CRISPR","score":0.8221259713172913},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.569996178150177},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.36431652307510376},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3334991931915283},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2999882400035858},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1901606023311615},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1197291910648346}],"concepts":[{"id":"https://openalex.org/C98108389","wikidata":"https://www.wikidata.org/wiki/Q412563","display_name":"CRISPR","level":3,"score":0.8221259713172913},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.569996178150177},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.36431652307510376},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3334991931915283},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2999882400035858},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1901606023311615},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1197291910648346}],"mesh":[{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064113","descriptor_name":"CRISPR-Cas Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064113","descriptor_name":"CRISPR-Cas Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064113","descriptor_name":"CRISPR-Cas Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btw739","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw739","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/7/1099/25149811/btw739.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28414855","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28414855","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btw739","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw739","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/7/1099/25149811/btw739.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320310766","display_name":"Jeanssons Stiftelser","ror":"https://ror.org/00r6p8t42"},{"id":"https://openalex.org/F4320315060","display_name":"Wenner-Gren Stiftelserna","ror":"https://ror.org/033b0v780"},{"id":"https://openalex.org/F4320320940","display_name":"Stiftelsen f\u00f6r\u00a0Strategisk Forskning","ror":"https://ror.org/044wr7g58"},{"id":"https://openalex.org/F4320322315","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691"},{"id":"https://openalex.org/F4320322581","display_name":"Vetenskapsr\u00e5det","ror":"https://ror.org/03zttf063"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2604172945.pdf","grobid_xml":"https://content.openalex.org/works/W2604172945.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W1490161904","https://openalex.org/W1869792624","https://openalex.org/W1934704664","https://openalex.org/W1980310638","https://openalex.org/W2003171404","https://openalex.org/W2031211461","https://openalex.org/W2034048377","https://openalex.org/W2045435533","https://openalex.org/W2064815984","https://openalex.org/W2127862779","https://openalex.org/W2131395804","https://openalex.org/W2152505144","https://openalex.org/W2252568502","https://openalex.org/W6645218074"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W4293199045","https://openalex.org/W2405656580","https://openalex.org/W2642604616","https://openalex.org/W3162049976","https://openalex.org/W4381712632","https://openalex.org/W3163009052","https://openalex.org/W4213036952","https://openalex.org/W4377030018","https://openalex.org/W3111496797"],"abstract_inverted_index":{"Motivation:":[0],"Genome":[1],"editing":[2],"using":[3],"versions":[4],"of":[5,17,37],"the":[6,15,41],"bacterial":[7],"CRISPR/Cas9":[8],"system":[9],"can":[10],"be":[11,46],"used":[12,47],"to":[13,48,66,75],"probe":[14],"function":[16,92],"selected":[18],"genes":[19,38,55,64],"in":[20],"any":[21],"organism.":[22],"Green":[23],"Listed":[24],"is":[25,100],"a":[26,59,67,81,90],"web-based":[27],"tool":[28],"that":[29],"rapidly":[30],"designs":[31],"custom":[32],"CRISPR":[33],"screens":[34,50,79],"targeting":[35,51],"sets":[36],"defined":[39],"by":[40],"user.":[42],"It":[43],"could":[44],"thus":[45],"design":[49],"for":[52],"example":[53],"all":[54,63],"differentially":[56],"expressed":[57],"during":[58],"specific":[60,68],"stimuli":[61],"or":[62,70],"related":[65],"pathway":[69],"function,":[71],"as":[72,74,93,95],"well":[73,94],"generate":[76],"targeted":[77],"secondary":[78],"following":[80],"large-scale":[82],"screen.":[83],"Availability":[84],"and":[85,98],"Implementation:":[86],"The":[87],"software,":[88],"including":[89],"demo":[91],"explanatory":[96],"texts":[97],"videos,":[99],"available":[101],"through":[102],"greenlisted.cmm.ki.se":[103],".":[104],"Contact:":[105],"fredrik.wermeling@ki.se.":[106]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
