{"id":"https://openalex.org/W2561576287","doi":"https://doi.org/10.1093/bioinformatics/btw721","title":"MRUniNovo: an efficient tool for <i>de novo</i> peptide sequencing utilizing the hadoop distributed computing framework","display_name":"MRUniNovo: an efficient tool for <i>de novo</i> peptide sequencing utilizing the hadoop distributed computing framework","publication_year":2016,"publication_date":"2016-12-16","ids":{"openalex":"https://openalex.org/W2561576287","doi":"https://doi.org/10.1093/bioinformatics/btw721","mag":"2561576287","pmid":"https://pubmed.ncbi.nlm.nih.gov/27993788"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btw721","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw721","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/6/944/25147928/btw721.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/33/6/944/25147928/btw721.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100386719","display_name":"Chuang Li","orcid":"https://orcid.org/0000-0003-2905-4734"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chuang Li","raw_affiliation_strings":["College of Information Science and Engineering, Hunan University, National Supercomputing Center in Changsha, Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Science and Engineering, Hunan University, National Supercomputing Center in Changsha, Changsha, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100605171","display_name":"Tao Chen","orcid":"https://orcid.org/0000-0001-8191-4135"},"institutions":[{"id":"https://openalex.org/I4210149540","display_name":"Beijing Proteome Research Center","ror":"https://ror.org/05pp5b412","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210149540"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tao Chen","raw_affiliation_strings":["State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences, Beijing Institute of Radiation Medicine, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences, Beijing Institute of Radiation Medicine, Beijing, China","institution_ids":["https://openalex.org/I4210149540"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023499987","display_name":"Qiang He","orcid":"https://orcid.org/0000-0002-2607-4556"},"institutions":[{"id":"https://openalex.org/I57093077","display_name":"Swinburne University of Technology","ror":"https://ror.org/031rekg67","country_code":"AU","type":"education","lineage":["https://openalex.org/I57093077"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Qiang He","raw_affiliation_strings":["School of Software and Electrical Engineering, Swinburne University of Technology, Melbourne, Victoria, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Software and Electrical Engineering, Swinburne University of Technology, Melbourne, Victoria, Australia","institution_ids":["https://openalex.org/I57093077"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100765277","display_name":"Yunping Zhu","orcid":"https://orcid.org/0000-0002-7320-7411"},"institutions":[{"id":"https://openalex.org/I4210149540","display_name":"Beijing Proteome Research Center","ror":"https://ror.org/05pp5b412","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210149540"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yunping Zhu","raw_affiliation_strings":["State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences, Beijing Institute of Radiation Medicine, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences, Beijing Institute of Radiation Medicine, Beijing, China","institution_ids":["https://openalex.org/I4210149540"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078793726","display_name":"Kenli Li","orcid":"https://orcid.org/0000-0002-2635-7716"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Kenli Li","raw_affiliation_strings":["College of Information Science and Engineering, Hunan University, National Supercomputing Center in Changsha, Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Science and Engineering, Hunan University, National Supercomputing Center in Changsha, Changsha, China","institution_ids":["https://openalex.org/I16609230"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5078793726"],"corresponding_institution_ids":["https://openalex.org/I16609230"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.4107,"has_fulltext":false,"cited_by_count":15,"citation_normalized_percentile":{"value":0.88082318,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"33","issue":"6","first_page":"944","last_page":"946"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.8939999938011169,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.8939999938011169,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.012000000104308128,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.01080000028014183,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/correctness","display_name":"Correctness","score":0.7825964689254761},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7379257678985596},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.6280732750892639},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.5797106027603149},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5551347136497498},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5038630366325378},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4722185432910919},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.44703638553619385},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4075024127960205},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.31950879096984863},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2660612463951111},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1761619746685028}],"concepts":[{"id":"https://openalex.org/C55439883","wikidata":"https://www.wikidata.org/wiki/Q360812","display_name":"Correctness","level":2,"score":0.7825964689254761},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7379257678985596},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.6280732750892639},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.5797106027603149},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5551347136497498},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5038630366325378},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4722185432910919},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44703638553619385},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4075024127960205},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.31950879096984863},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2660612463951111},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1761619746685028}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btw721","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw721","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/6/944/25147928/btw721.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27993788","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27993788","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:researchbank.swinburne.edu.au:1d2a09f9-d220-48ba-bbe6-1b9ffd51f355/1","is_oa":false,"landing_page_url":"http://hdl.handle.net/1959.3/436739","pdf_url":null,"source":{"id":"https://openalex.org/S4306401157","display_name":"Swinburne Research Bank (Swinburne University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I57093077","host_organization_name":"Swinburne University of Technology","host_organization_lineage":["https://openalex.org/I57093077"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, Vol. 33, no. 6 (Dec 2016), pp. 944-946","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btw721","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw721","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/6/944/25147928/btw721.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5079148470","display_name":null,"funder_award_id":"61303073","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W1987462803","https://openalex.org/W2056499061","https://openalex.org/W2069860553","https://openalex.org/W2123090260","https://openalex.org/W2127169206","https://openalex.org/W2131806062","https://openalex.org/W2131856634","https://openalex.org/W2135078307","https://openalex.org/W2153527235","https://openalex.org/W2173213060"],"related_works":["https://openalex.org/W1964405022","https://openalex.org/W126953346","https://openalex.org/W2113128227","https://openalex.org/W632256878","https://openalex.org/W4211197663","https://openalex.org/W2491403535","https://openalex.org/W3123068371","https://openalex.org/W2479811461","https://openalex.org/W2104915799","https://openalex.org/W2355429491"],"abstract_inverted_index":{"Summary:":[0],"Tandem":[1],"mass":[2,28],"spectrometry-based":[3],"de":[4,18,42,67],"novo":[5,19,43,68],"peptide":[6,20,44,69],"sequencing":[7,21,70],"is":[8,94],"a":[9,37],"complex":[10],"and":[11,24,75,80,91,106],"time-consuming":[12],"process.":[13],"The":[14,103],"current":[15],"algorithms":[16],"for":[17,40],"cannot":[22],"rapidly":[23],"thoroughly":[25],"process":[26,83],"large":[27,85],"spectrometry":[29],"datasets.":[30],"In":[31],"this":[32],"paper,":[33],"we":[34],"propose":[35],"MRUniNovo,":[36],"novel":[38],"tool":[39,99],"parallel":[41],"sequencing.":[45],"MRUniNovo":[46,60,93],"parallelizes":[47],"UniNovo":[48,88],"based":[49],"on":[50],"the":[51,63,73,78,107],"Hadoop":[52],"compute":[53],"platform.":[54],"Our":[55],"experimental":[56],"results":[57],"demonstrate":[58],"that":[59,87],"significantly":[61],"reduces":[62],"computation":[64],"time":[65],"of":[66,77],"without":[71],"sacrificing":[72],"correctness":[74],"accuracy":[76],"results,":[79],"thus":[81],"can":[82],"very":[84],"datasets":[86],"cannot.":[89],"Availability":[90],"Implementation:":[92],"an":[95],"open":[96],"source":[97,104],"software":[98],"implemented":[100],"in":[101],"java.":[102],"code":[105],"parameter":[108],"settings":[109],"are":[110,122],"available":[111,123],"at":[112,124],"http://bioinfo.hupo.org.cn/MRUniNovo/index.php.":[113],"Contact:":[114],"s131020002@hnu.edu.cn":[115],";":[116],"taochen1019@163.com.":[117],"Supplementary":[118,120],"information:":[119],"data":[121],"Bioinformatics":[125],"online.":[126]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":2}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2017-01-06T00:00:00"}
