{"id":"https://openalex.org/W2527701292","doi":"https://doi.org/10.1093/bioinformatics/btw636","title":"Pathway Inspector: a pathway based web application for RNAseq analysis of model and non-model organisms","display_name":"Pathway Inspector: a pathway based web application for RNAseq analysis of model and non-model organisms","publication_year":2016,"publication_date":"2016-10-03","ids":{"openalex":"https://openalex.org/W2527701292","doi":"https://doi.org/10.1093/bioinformatics/btw636","mag":"2527701292","pmid":"https://pubmed.ncbi.nlm.nih.gov/28158604"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btw636","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw636","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/3/453/25145959/btw636.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/33/3/453/25145959/btw636.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035748127","display_name":"Luca Bianco","orcid":"https://orcid.org/0000-0002-0196-8422"},"institutions":[{"id":"https://openalex.org/I103225651","display_name":"Fondazione Edmund Mach","ror":"https://ror.org/0381bab64","country_code":"IT","type":"other","lineage":["https://openalex.org/I103225651"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Luca Bianco","raw_affiliation_strings":["Research and Innovation Center, Edmund Mach Foundation, 38010\u2009S. Michele all\u2019Adige, Italy"],"affiliations":[{"raw_affiliation_string":"Research and Innovation Center, Edmund Mach Foundation, 38010\u2009S. Michele all\u2019Adige, Italy","institution_ids":["https://openalex.org/I103225651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005492417","display_name":"Samantha Riccadonna","orcid":"https://orcid.org/0000-0002-9737-8274"},"institutions":[{"id":"https://openalex.org/I103225651","display_name":"Fondazione Edmund Mach","ror":"https://ror.org/0381bab64","country_code":"IT","type":"other","lineage":["https://openalex.org/I103225651"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Samantha Riccadonna","raw_affiliation_strings":["Research and Innovation Center, Edmund Mach Foundation, 38010\u2009S. Michele all\u2019Adige, Italy"],"affiliations":[{"raw_affiliation_string":"Research and Innovation Center, Edmund Mach Foundation, 38010\u2009S. Michele all\u2019Adige, Italy","institution_ids":["https://openalex.org/I103225651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021297661","display_name":"Enrico Lavezzo","orcid":"https://orcid.org/0000-0002-3902-8356"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Enrico Lavezzo","raw_affiliation_strings":["Department of Molecular Medicine, University of Padova, Padova, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Medicine, University of Padova, Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032127010","display_name":"Marco Falda","orcid":"https://orcid.org/0000-0003-2642-519X"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marco Falda","raw_affiliation_strings":["Department of Molecular Medicine, University of Padova, Padova, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Medicine, University of Padova, Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004709462","display_name":"Elide Formentin","orcid":"https://orcid.org/0000-0002-7994-4666"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Elide Formentin","raw_affiliation_strings":["Department of Biology, University of Padova, Padova, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Padova, Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056119983","display_name":"Duccio Cavalieri","orcid":"https://orcid.org/0000-0001-6426-5719"},"institutions":[{"id":"https://openalex.org/I103225651","display_name":"Fondazione Edmund Mach","ror":"https://ror.org/0381bab64","country_code":"IT","type":"other","lineage":["https://openalex.org/I103225651"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Duccio Cavalieri","raw_affiliation_strings":["Research and Innovation Center, Edmund Mach Foundation, 38010\u2009S. Michele all\u2019Adige, Italy"],"affiliations":[{"raw_affiliation_string":"Research and Innovation Center, Edmund Mach Foundation, 38010\u2009S. Michele all\u2019Adige, Italy","institution_ids":["https://openalex.org/I103225651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071924678","display_name":"Stefano Toppo","orcid":"https://orcid.org/0000-0002-0246-3119"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Stefano Toppo","raw_affiliation_strings":["Department of Molecular Medicine, University of Padova, Padova, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Medicine, University of Padova, Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042600667","display_name":"Paolo Fontana","orcid":"https://orcid.org/0000-0002-4523-4818"},"institutions":[{"id":"https://openalex.org/I103225651","display_name":"Fondazione Edmund Mach","ror":"https://ror.org/0381bab64","country_code":"IT","type":"other","lineage":["https://openalex.org/I103225651"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Paolo Fontana","raw_affiliation_strings":["Research and Innovation Center, Edmund Mach Foundation, 38010\u2009S. Michele all\u2019Adige, Italy"],"affiliations":[{"raw_affiliation_string":"Research and Innovation Center, Edmund Mach Foundation, 38010\u2009S. Michele all\u2019Adige, Italy","institution_ids":["https://openalex.org/I103225651"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5042600667"],"corresponding_institution_ids":["https://openalex.org/I103225651"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.6972,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.74878087,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"33","issue":"3","first_page":"453","last_page":"455"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pathway-analysis","display_name":"Pathway analysis","score":0.7244186997413635},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6454167366027832},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.537185788154602},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4204055666923523},{"id":"https://openalex.org/keywords/model-organism","display_name":"Model organism","score":0.4152669906616211},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3449695110321045},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2780517339706421},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.21345975995063782},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1295822560787201}],"concepts":[{"id":"https://openalex.org/C2779230013","wikidata":"https://www.wikidata.org/wiki/Q25303877","display_name":"Pathway analysis","level":4,"score":0.7244186997413635},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6454167366027832},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.537185788154602},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4204055666923523},{"id":"https://openalex.org/C19843653","wikidata":"https://www.wikidata.org/wiki/Q213907","display_name":"Model organism","level":3,"score":0.4152669906616211},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3449695110321045},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2780517339706421},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.21345975995063782},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1295822560787201},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/btw636","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw636","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/3/453/25145959/btw636.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28158604","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28158604","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:flore.unifi.it:2158/1107781","is_oa":true,"landing_page_url":"http://hdl.handle.net/2158/1107781","pdf_url":null,"source":{"id":"https://openalex.org/S4306402033","display_name":"Florence Research (University of Florence)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45084792","host_organization_name":"University of Florence","host_organization_lineage":["https://openalex.org/I45084792"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:openpub.fmach.it:10449/34982","is_oa":true,"landing_page_url":"http://hdl.handle.net/10449/34982","pdf_url":null,"source":{"id":"https://openalex.org/S4377196413","display_name":"CINECA IRIS Institutional Research Information System (Fondazione Edmund Mach)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I103225651","host_organization_name":"Fondazione Edmund Mach","host_organization_lineage":["https://openalex.org/I103225651"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5408796","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5408796","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:www.research.unipd.it:11577/3204285","is_oa":false,"landing_page_url":"http://hdl.handle.net/11577/3204285","pdf_url":null,"source":{"id":"https://openalex.org/S4306402547","display_name":"Padua Research Archive (University of Padova)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138689650","host_organization_name":"University of Padua","host_organization_lineage":["https://openalex.org/I138689650"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btw636","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw636","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/3/453/25145959/btw636.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2527701292.pdf","grobid_xml":"https://content.openalex.org/works/W2527701292.grobid-xml"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W2021880506","https://openalex.org/W2080218141","https://openalex.org/W2099774431","https://openalex.org/W2100980426","https://openalex.org/W2106248311","https://openalex.org/W2110256992","https://openalex.org/W2123329045","https://openalex.org/W2137526110","https://openalex.org/W2178043251"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W614182288","https://openalex.org/W2529183679","https://openalex.org/W2971505853","https://openalex.org/W2059629050","https://openalex.org/W3013644380","https://openalex.org/W2152389032","https://openalex.org/W2053706318","https://openalex.org/W2151866902","https://openalex.org/W2794999358"],"abstract_inverted_index":{"Contact:paolo.fontana@fmach.it":[0]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}