{"id":"https://openalex.org/W2509321831","doi":"https://doi.org/10.1093/bioinformatics/btw526","title":"Assembly-based inference of B-cell receptor repertoires from short read RNA sequencing data with V\u2019DJer","display_name":"Assembly-based inference of B-cell receptor repertoires from short read RNA sequencing data with V\u2019DJer","publication_year":2016,"publication_date":"2016-08-24","ids":{"openalex":"https://openalex.org/W2509321831","doi":"https://doi.org/10.1093/bioinformatics/btw526","mag":"2509321831","pmid":"https://pubmed.ncbi.nlm.nih.gov/27559159"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btw526","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw526","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/24/3729/16920456/btw526.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/24/3729/16920456/btw526.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009852862","display_name":"Lisle E. Mose","orcid":null},"institutions":[{"id":"https://openalex.org/I4390039329","display_name":"UNC Lineberger Comprehensive Cancer Center","ror":"https://ror.org/043ehm030","country_code":null,"type":"healthcare","lineage":["https://openalex.org/I114027177","https://openalex.org/I4390039329"]},{"id":"https://openalex.org/I4210150070","display_name":"Segeberger Kliniken","ror":"https://ror.org/04n0rde95","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210150070"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Lisle E. Mose","raw_affiliation_strings":["1Lineberger Comprehensive Cancer Center"],"affiliations":[{"raw_affiliation_string":"1Lineberger Comprehensive Cancer Center","institution_ids":["https://openalex.org/I4210150070","https://openalex.org/I4390039329"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009023956","display_name":"Sara R. Selitsky","orcid":"https://orcid.org/0000-0001-8765-5269"},"institutions":[{"id":"https://openalex.org/I4210150070","display_name":"Segeberger Kliniken","ror":"https://ror.org/04n0rde95","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210150070"]},{"id":"https://openalex.org/I4390039329","display_name":"UNC Lineberger Comprehensive Cancer Center","ror":"https://ror.org/043ehm030","country_code":null,"type":"healthcare","lineage":["https://openalex.org/I114027177","https://openalex.org/I4390039329"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sara R. Selitsky","raw_affiliation_strings":["1Lineberger Comprehensive Cancer Center"],"affiliations":[{"raw_affiliation_string":"1Lineberger Comprehensive Cancer Center","institution_ids":["https://openalex.org/I4210150070","https://openalex.org/I4390039329"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025528692","display_name":"Lisa M. Bixby","orcid":"https://orcid.org/0000-0002-4036-9262"},"institutions":[{"id":"https://openalex.org/I4390039329","display_name":"UNC Lineberger Comprehensive Cancer Center","ror":"https://ror.org/043ehm030","country_code":null,"type":"healthcare","lineage":["https://openalex.org/I114027177","https://openalex.org/I4390039329"]},{"id":"https://openalex.org/I4210150070","display_name":"Segeberger Kliniken","ror":"https://ror.org/04n0rde95","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210150070"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Lisa M. Bixby","raw_affiliation_strings":["1Lineberger Comprehensive Cancer Center","2Division of Hematology/Oncology, Department of Internal Medicine,"],"affiliations":[{"raw_affiliation_string":"1Lineberger Comprehensive Cancer Center","institution_ids":["https://openalex.org/I4210150070","https://openalex.org/I4390039329"]},{"raw_affiliation_string":"2Division of Hematology/Oncology, Department of Internal Medicine,","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025392552","display_name":"David Marron","orcid":null},"institutions":[{"id":"https://openalex.org/I4390039329","display_name":"UNC Lineberger Comprehensive Cancer Center","ror":"https://ror.org/043ehm030","country_code":null,"type":"healthcare","lineage":["https://openalex.org/I114027177","https://openalex.org/I4390039329"]},{"id":"https://openalex.org/I4210150070","display_name":"Segeberger Kliniken","ror":"https://ror.org/04n0rde95","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210150070"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"David L. Marron","raw_affiliation_strings":["1Lineberger Comprehensive Cancer Center"],"affiliations":[{"raw_affiliation_string":"1Lineberger Comprehensive Cancer Center","institution_ids":["https://openalex.org/I4210150070","https://openalex.org/I4390039329"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066417713","display_name":"Michael D. Iglesia","orcid":"https://orcid.org/0000-0002-0841-2144"},"institutions":[{"id":"https://openalex.org/I16565172","display_name":"Tusculum College","ror":"https://ror.org/04snwmr98","country_code":"US","type":"education","lineage":["https://openalex.org/I16565172"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael D. Iglesia","raw_affiliation_strings":["3Curriculum in Genetics and Molecular Biology"],"affiliations":[{"raw_affiliation_string":"3Curriculum in Genetics and Molecular Biology","institution_ids":["https://openalex.org/I16565172"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026510629","display_name":"Jonathan S. Serody","orcid":"https://orcid.org/0000-0003-4568-1092"},"institutions":[{"id":"https://openalex.org/I4210124771","display_name":"Bipar","ror":"https://ror.org/027364b18","country_code":"FR","type":"facility","lineage":["https://openalex.org/I17606148","https://openalex.org/I197681013","https://openalex.org/I4210088668","https://openalex.org/I4210099460","https://openalex.org/I4210124771","https://openalex.org/I4210138120","https://openalex.org/I4413696090"]},{"id":"https://openalex.org/I4210150070","display_name":"Segeberger Kliniken","ror":"https://ror.org/04n0rde95","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210150070"]},{"id":"https://openalex.org/I4390039329","display_name":"UNC Lineberger Comprehensive Cancer Center","ror":"https://ror.org/043ehm030","country_code":null,"type":"healthcare","lineage":["https://openalex.org/I114027177","https://openalex.org/I4390039329"]}],"countries":["DE","FR"],"is_corresponding":false,"raw_author_name":"Jonathan S. Serody","raw_affiliation_strings":["1Lineberger Comprehensive Cancer Center","2Division of Hematology/Oncology, Department of Internal Medicine,","4Department of Microbiology/Immunology"],"affiliations":[{"raw_affiliation_string":"1Lineberger Comprehensive Cancer Center","institution_ids":["https://openalex.org/I4210150070","https://openalex.org/I4390039329"]},{"raw_affiliation_string":"2Division of Hematology/Oncology, Department of Internal Medicine,","institution_ids":[]},{"raw_affiliation_string":"4Department of Microbiology/Immunology","institution_ids":["https://openalex.org/I4210124771"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062498736","display_name":"Charles M. Perou","orcid":"https://orcid.org/0000-0001-9827-2247"},"institutions":[{"id":"https://openalex.org/I4210150070","display_name":"Segeberger Kliniken","ror":"https://ror.org/04n0rde95","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210150070"]},{"id":"https://openalex.org/I4210147155","display_name":"Pediatrics and Genetics","ror":"https://ror.org/03t432d20","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210147155"]},{"id":"https://openalex.org/I4390039329","display_name":"UNC Lineberger Comprehensive Cancer Center","ror":"https://ror.org/043ehm030","country_code":null,"type":"healthcare","lineage":["https://openalex.org/I114027177","https://openalex.org/I4390039329"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Charles M. Perou","raw_affiliation_strings":["1Lineberger Comprehensive Cancer Center","5Departments of Genetics and Pathology and Laboratory Medicine"],"affiliations":[{"raw_affiliation_string":"1Lineberger Comprehensive Cancer Center","institution_ids":["https://openalex.org/I4210150070","https://openalex.org/I4390039329"]},{"raw_affiliation_string":"5Departments of Genetics and Pathology and Laboratory Medicine","institution_ids":["https://openalex.org/I4210147155"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020894945","display_name":"Benjamin G. Vincent","orcid":"https://orcid.org/0000-0002-1762-2282"},"institutions":[{"id":"https://openalex.org/I4390039329","display_name":"UNC Lineberger Comprehensive Cancer Center","ror":"https://ror.org/043ehm030","country_code":null,"type":"healthcare","lineage":["https://openalex.org/I114027177","https://openalex.org/I4390039329"]},{"id":"https://openalex.org/I4210150070","display_name":"Segeberger Kliniken","ror":"https://ror.org/04n0rde95","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210150070"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Benjamin G. Vincent","raw_affiliation_strings":["1Lineberger Comprehensive Cancer Center","2Division of Hematology/Oncology, Department of Internal Medicine,"],"affiliations":[{"raw_affiliation_string":"1Lineberger Comprehensive Cancer Center","institution_ids":["https://openalex.org/I4210150070","https://openalex.org/I4390039329"]},{"raw_affiliation_string":"2Division of Hematology/Oncology, Department of Internal Medicine,","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054811851","display_name":"Joel S. Parker","orcid":"https://orcid.org/0000-0003-2080-6901"},"institutions":[{"id":"https://openalex.org/I4210150070","display_name":"Segeberger Kliniken","ror":"https://ror.org/04n0rde95","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210150070"]},{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]},{"id":"https://openalex.org/I4390039329","display_name":"UNC Lineberger Comprehensive Cancer Center","ror":"https://ror.org/043ehm030","country_code":null,"type":"healthcare","lineage":["https://openalex.org/I114027177","https://openalex.org/I4390039329"]}],"countries":["DE","US"],"is_corresponding":true,"raw_author_name":"Joel S. Parker","raw_affiliation_strings":["1Lineberger Comprehensive Cancer Center","6Departments of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA"],"affiliations":[{"raw_affiliation_string":"1Lineberger Comprehensive Cancer Center","institution_ids":["https://openalex.org/I4210150070","https://openalex.org/I4390039329"]},{"raw_affiliation_string":"6Departments of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA","institution_ids":["https://openalex.org/I114027177"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5020894945","https://openalex.org/A5054811851"],"corresponding_institution_ids":["https://openalex.org/I114027177","https://openalex.org/I4210150070","https://openalex.org/I4390039329"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":3.731,"has_fulltext":false,"cited_by_count":89,"citation_normalized_percentile":{"value":0.93418543,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"32","issue":"24","first_page":"3729","last_page":"3734"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11491","display_name":"CAR-T cell therapy research","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11020","display_name":"Immune Cell Function and Interaction","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/amplicon","display_name":"Amplicon","score":0.6667811870574951},{"id":"https://openalex.org/keywords/breakpoint-cluster-region","display_name":"breakpoint cluster region","score":0.6357579231262207},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5770899653434753},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5675150752067566},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5405207872390747},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4696366488933563},{"id":"https://openalex.org/keywords/deep-sequencing","display_name":"Deep sequencing","score":0.4682173728942871},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.45633572340011597},{"id":"https://openalex.org/keywords/b-cell-receptor","display_name":"B-cell receptor","score":0.44153568148612976},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3789098858833313},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3579404950141907},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3243267238140106},{"id":"https://openalex.org/keywords/polymerase-chain-reaction","display_name":"Polymerase chain reaction","score":0.22656244039535522},{"id":"https://openalex.org/keywords/b-cell","display_name":"B cell","score":0.1813567876815796},{"id":"https://openalex.org/keywords/antibody","display_name":"Antibody","score":0.11778095364570618}],"concepts":[{"id":"https://openalex.org/C8185291","wikidata":"https://www.wikidata.org/wiki/Q2844457","display_name":"Amplicon","level":4,"score":0.6667811870574951},{"id":"https://openalex.org/C43907098","wikidata":"https://www.wikidata.org/wiki/Q903924","display_name":"breakpoint cluster region","level":3,"score":0.6357579231262207},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5770899653434753},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5675150752067566},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5405207872390747},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4696366488933563},{"id":"https://openalex.org/C132917006","wikidata":"https://www.wikidata.org/wiki/Q5250436","display_name":"Deep sequencing","level":4,"score":0.4682173728942871},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.45633572340011597},{"id":"https://openalex.org/C157695867","wikidata":"https://www.wikidata.org/wiki/Q1100474","display_name":"B-cell receptor","level":4,"score":0.44153568148612976},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3789098858833313},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3579404950141907},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3243267238140106},{"id":"https://openalex.org/C49105822","wikidata":"https://www.wikidata.org/wiki/Q176996","display_name":"Polymerase chain reaction","level":3,"score":0.22656244039535522},{"id":"https://openalex.org/C2778453870","wikidata":"https://www.wikidata.org/wiki/Q188930","display_name":"B cell","level":3,"score":0.1813567876815796},{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.11778095364570618}],"mesh":[{"descriptor_ui":"D001402","descriptor_name":"B-Lymphocytes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001402","descriptor_name":"B-Lymphocytes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001402","descriptor_name":"B-Lymphocytes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011947","descriptor_name":"Receptors, Antigen, B-Cell","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011947","descriptor_name":"Receptors, Antigen, B-Cell","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011947","descriptor_name":"Receptors, Antigen, B-Cell","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btw526","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw526","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/24/3729/16920456/btw526.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27559159","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27559159","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/24/3729","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/24/3729","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:5167060","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5167060","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btw526","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw526","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/24/3729/16920456/btw526.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306260","display_name":"Breast Cancer Research Foundation","ror":"https://ror.org/0348ff195"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2509321831.pdf","grobid_xml":"https://content.openalex.org/works/W2509321831.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W212794340","https://openalex.org/W1107917109","https://openalex.org/W1429374962","https://openalex.org/W1643112662","https://openalex.org/W1893868216","https://openalex.org/W1928465448","https://openalex.org/W1950829641","https://openalex.org/W1972115082","https://openalex.org/W1979552897","https://openalex.org/W1993833167","https://openalex.org/W1999574084","https://openalex.org/W2000509813","https://openalex.org/W2051947926","https://openalex.org/W2059785103","https://openalex.org/W2076669505","https://openalex.org/W2097828850","https://openalex.org/W2103056281","https://openalex.org/W2105381977","https://openalex.org/W2108234281","https://openalex.org/W2111665940","https://openalex.org/W2126419817","https://openalex.org/W2133527269","https://openalex.org/W2136651963","https://openalex.org/W2142081242","https://openalex.org/W2165567657","https://openalex.org/W2169456326","https://openalex.org/W2301782847"],"related_works":["https://openalex.org/W2034371596","https://openalex.org/W2339088386","https://openalex.org/W1762205131","https://openalex.org/W3142122206","https://openalex.org/W2089217336","https://openalex.org/W2000049641","https://openalex.org/W1918912342","https://openalex.org/W2775244680","https://openalex.org/W2031362256","https://openalex.org/W2000993160"],"abstract_inverted_index":{"V'DJer":[0],"is":[1],"implemented":[2],"in":[3],"C/C":[4],"++,":[5],"freely":[6],"available":[7,26],"for":[8],"academic":[9],"use":[10],"and":[11],"can":[12],"be":[13],"downloaded":[14],"from":[15],"Github:":[16],"https://github.com/mozack/vdjer":[17],"CONTACT:":[18],"benjamin_vincent@med.unc.edu":[19],"or":[20],"parkerjs@email.unc.eduSupplementary":[21],"information:":[22],"Supplementary":[23],"data":[24],"are":[25],"at":[27],"Bioinformatics":[28],"online.":[29]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":12},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":20},{"year":2020,"cited_by_count":11},{"year":2019,"cited_by_count":10},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}