{"id":"https://openalex.org/W2475414235","doi":"https://doi.org/10.1093/bioinformatics/btw519","title":"<i>shinyGEO</i>: a web-based application for analyzing gene expression omnibus datasets","display_name":"<i>shinyGEO</i>: a web-based application for analyzing gene expression omnibus datasets","publication_year":2016,"publication_date":"2016-08-08","ids":{"openalex":"https://openalex.org/W2475414235","doi":"https://doi.org/10.1093/bioinformatics/btw519","mag":"2475414235","pmid":"https://pubmed.ncbi.nlm.nih.gov/27503226"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btw519","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw519","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/23/3679/16920796/btw519.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/23/3679/16920796/btw519.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057287018","display_name":"Jasmine Dumas","orcid":null},"institutions":[{"id":"https://openalex.org/I118353179","display_name":"DePaul University","ror":"https://ror.org/04xtx5t16","country_code":"US","type":"education","lineage":["https://openalex.org/I118353179"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jasmine Dumas","raw_affiliation_strings":["1College of Computing and Digital Media, DePaul University, Chicago, IL, USA"],"affiliations":[{"raw_affiliation_string":"1College of Computing and Digital Media, DePaul University, Chicago, IL, USA","institution_ids":["https://openalex.org/I118353179"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053722282","display_name":"Michael Gargano","orcid":"https://orcid.org/0000-0002-2157-3591"},"institutions":[{"id":"https://openalex.org/I203331390","display_name":"Eastern Connecticut State University","ror":"https://ror.org/01mhgwt57","country_code":"US","type":"education","lineage":["https://openalex.org/I203331390","https://openalex.org/I4210132746"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael A. Gargano","raw_affiliation_strings":["2Department of Mathematics and Computer Science, Eastern Connecticut State University, Willimantic, CT, USA"],"affiliations":[{"raw_affiliation_string":"2Department of Mathematics and Computer Science, Eastern Connecticut State University, Willimantic, CT, USA","institution_ids":["https://openalex.org/I203331390"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011799414","display_name":"Garrett M. Dancik","orcid":"https://orcid.org/0000-0002-1391-8641"},"institutions":[{"id":"https://openalex.org/I203331390","display_name":"Eastern Connecticut State University","ror":"https://ror.org/01mhgwt57","country_code":"US","type":"education","lineage":["https://openalex.org/I203331390","https://openalex.org/I4210132746"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Garrett M. Dancik","raw_affiliation_strings":["2Department of Mathematics and Computer Science, Eastern Connecticut State University, Willimantic, CT, USA"],"affiliations":[{"raw_affiliation_string":"2Department of Mathematics and Computer Science, Eastern Connecticut State University, Willimantic, CT, USA","institution_ids":["https://openalex.org/I203331390"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5011799414"],"corresponding_institution_ids":["https://openalex.org/I203331390"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.5013,"has_fulltext":true,"cited_by_count":74,"citation_normalized_percentile":{"value":0.92948522,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"32","issue":"23","first_page":"3679","last_page":"3681"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9771999716758728,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6642168760299683},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5906798243522644},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.5596451759338379},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5120540261268616},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.48358839750289917},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.4785928428173065},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.4729863405227661},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.4721424877643585},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3432828187942505},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.32981762290000916},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.249083012342453},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21153101325035095},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.16813305020332336},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.13243696093559265},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.07807749509811401}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6642168760299683},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5906798243522644},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.5596451759338379},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5120540261268616},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.48358839750289917},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.4785928428173065},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.4729863405227661},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.4721424877643585},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3432828187942505},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.32981762290000916},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.249083012342453},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21153101325035095},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.16813305020332336},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.13243696093559265},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.07807749509811401}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btw519","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw519","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/23/3679/16920796/btw519.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27503226","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27503226","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btw519","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw519","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/23/3679/16920796/btw519.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.44999998807907104,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2475414235.pdf","grobid_xml":"https://content.openalex.org/works/W2475414235.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W1493486631","https://openalex.org/W1503899947","https://openalex.org/W1526025733","https://openalex.org/W1896206193","https://openalex.org/W1975905059","https://openalex.org/W2009719437","https://openalex.org/W2020541351","https://openalex.org/W2027397519","https://openalex.org/W2058451329","https://openalex.org/W2082668371","https://openalex.org/W2099951161","https://openalex.org/W2100239923","https://openalex.org/W2118258530","https://openalex.org/W2122673439","https://openalex.org/W2126496132","https://openalex.org/W2131966673","https://openalex.org/W2137761597","https://openalex.org/W2147925490","https://openalex.org/W2160866940"],"related_works":["https://openalex.org/W4205762803","https://openalex.org/W2754214645","https://openalex.org/W2535856026","https://openalex.org/W2265065644","https://openalex.org/W2134699697","https://openalex.org/W2322875716","https://openalex.org/W2468698815","https://openalex.org/W2383516975","https://openalex.org/W4220668561","https://openalex.org/W3081644756"],"abstract_inverted_index":{"Web":[0],"application":[1],"and":[2],"source":[3],"code":[4],"are":[5,14],"available":[6,15],"from":[7],"http://gdancik.github.io/shinyGEO/":[8],"CONTACT:":[9],"dancikg@easternct.eduSupplementary":[10],"information:":[11],"Supplementary":[12],"data":[13],"at":[16],"Bioinformatics":[17],"online.":[18]},"counts_by_year":[{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":16},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":10},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":5}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2016-08-23T00:00:00"}