{"id":"https://openalex.org/W2481737556","doi":"https://doi.org/10.1093/bioinformatics/btw517","title":"RNAcommender: genome-wide recommendation of RNA\u2013protein interactions","display_name":"RNAcommender: genome-wide recommendation of RNA\u2013protein interactions","publication_year":2016,"publication_date":"2016-08-08","ids":{"openalex":"https://openalex.org/W2481737556","doi":"https://doi.org/10.1093/bioinformatics/btw517","mag":"2481737556","pmid":"https://pubmed.ncbi.nlm.nih.gov/27503225"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btw517","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw517","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/23/3627/16920682/btw517.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/23/3627/16920682/btw517.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007512682","display_name":"Gianluca Corrado","orcid":null},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Gianluca Corrado","raw_affiliation_strings":["1Department of Information Engineering and Computer Science, University of Trento, Trento 38123, Italy"],"affiliations":[{"raw_affiliation_string":"1Department of Information Engineering and Computer Science, University of Trento, Trento 38123, Italy","institution_ids":["https://openalex.org/I193223587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002300255","display_name":"Toma Tebaldi","orcid":"https://orcid.org/0000-0002-0625-1631"},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Toma Tebaldi","raw_affiliation_strings":["2Centre for Integrative Biology, University of Trento, Trento 38123, Italy"],"affiliations":[{"raw_affiliation_string":"2Centre for Integrative Biology, University of Trento, Trento 38123, Italy","institution_ids":["https://openalex.org/I193223587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064539521","display_name":"Fabrizio Costa","orcid":"https://orcid.org/0000-0002-4900-995X"},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Fabrizio Costa","raw_affiliation_strings":["3Department of Computer Science, Albert-Ludwigs-Universitaet Freiburg, Freiburg 79110, Germany"],"affiliations":[{"raw_affiliation_string":"3Department of Computer Science, Albert-Ludwigs-Universitaet Freiburg, Freiburg 79110, Germany","institution_ids":["https://openalex.org/I161046081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027422071","display_name":"Paolo Frasconi","orcid":"https://orcid.org/0000-0003-3117-9245"},"institutions":[{"id":"https://openalex.org/I45084792","display_name":"University of Florence","ror":"https://ror.org/04jr1s763","country_code":"IT","type":"education","lineage":["https://openalex.org/I45084792"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Paolo Frasconi","raw_affiliation_strings":["4Dipartimento di Ingegneria dell\u2019Informazione, University of Florence, Florence 50139, Italy"],"affiliations":[{"raw_affiliation_string":"4Dipartimento di Ingegneria dell\u2019Informazione, University of Florence, Florence 50139, Italy","institution_ids":["https://openalex.org/I45084792"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066187890","display_name":"Andrea Passerini","orcid":"https://orcid.org/0000-0002-2765-5395"},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Andrea Passerini","raw_affiliation_strings":["1Department of Information Engineering and Computer Science, University of Trento, Trento 38123, Italy"],"affiliations":[{"raw_affiliation_string":"1Department of Information Engineering and Computer Science, University of Trento, Trento 38123, Italy","institution_ids":["https://openalex.org/I193223587"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5007512682","https://openalex.org/A5066187890"],"corresponding_institution_ids":["https://openalex.org/I193223587"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.3924,"has_fulltext":false,"cited_by_count":39,"citation_normalized_percentile":{"value":0.82122855,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"32","issue":"23","first_page":"3627","last_page":"3634"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interactome","display_name":"Interactome","score":0.8188152313232422},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.7676209211349487},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.7009857892990112},{"id":"https://openalex.org/keywords/rna-binding-protein","display_name":"RNA-binding protein","score":0.5346113443374634},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.520319938659668},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.46914854645729065},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.42101776599884033},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4181830883026123},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2578820586204529},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.19701305031776428},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.17030119895935059}],"concepts":[{"id":"https://openalex.org/C9760119","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interactome","level":3,"score":0.8188152313232422},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.7676209211349487},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.7009857892990112},{"id":"https://openalex.org/C41282012","wikidata":"https://www.wikidata.org/wiki/Q3928341","display_name":"RNA-binding protein","level":4,"score":0.5346113443374634},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.520319938659668},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.46914854645729065},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.42101776599884033},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4181830883026123},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2578820586204529},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19701305031776428},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.17030119895935059}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btw517","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw517","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/23/3627/16920682/btw517.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27503225","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27503225","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:flore.unifi.it:2158/1081053","is_oa":false,"landing_page_url":"http://hdl.handle.net/2158/1081053","pdf_url":null,"source":{"id":"https://openalex.org/S4306402033","display_name":"Florence Research (University of Florence)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45084792","host_organization_name":"University of Florence","host_organization_lineage":["https://openalex.org/I45084792"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:iris.unitn.it:11572/168560","is_oa":true,"landing_page_url":"https://academic.oup.com/bioinformatics/article/32/23/3627/2525632","pdf_url":null,"source":{"id":"https://openalex.org/S4306401913","display_name":"Institutional Research Information System (Universit\u00e0 degli Studi di Trento)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I193223587","host_organization_name":"University of Trento","host_organization_lineage":["https://openalex.org/I193223587"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btw517","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw517","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/23/3627/16920682/btw517.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.49000000953674316,"display_name":"Partnerships for the goals"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2481737556.pdf","grobid_xml":"https://content.openalex.org/works/W2481737556.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W205829674","https://openalex.org/W1690919088","https://openalex.org/W1731645091","https://openalex.org/W1997535872","https://openalex.org/W2015175027","https://openalex.org/W2019217933","https://openalex.org/W2025150647","https://openalex.org/W2043545458","https://openalex.org/W2054141820","https://openalex.org/W2055431298","https://openalex.org/W2073858449","https://openalex.org/W2080977835","https://openalex.org/W2086561953","https://openalex.org/W2103375140","https://openalex.org/W2103683291","https://openalex.org/W2107559744","https://openalex.org/W2108575282","https://openalex.org/W2108630796","https://openalex.org/W2114190652","https://openalex.org/W2127375279","https://openalex.org/W2127982146","https://openalex.org/W2137476097","https://openalex.org/W2140431670","https://openalex.org/W2147526198","https://openalex.org/W2149480306","https://openalex.org/W2155831456","https://openalex.org/W2157122545","https://openalex.org/W2157495054","https://openalex.org/W2182726182","https://openalex.org/W2283504545","https://openalex.org/W2323943568"],"related_works":["https://openalex.org/W4292634579","https://openalex.org/W2964314049","https://openalex.org/W2022326234","https://openalex.org/W4388694323","https://openalex.org/W3215098729","https://openalex.org/W2109175855","https://openalex.org/W4366238719","https://openalex.org/W2041440237","https://openalex.org/W2487752912","https://openalex.org/W2569356794"],"abstract_inverted_index":{"The":[0],"software":[1],"is":[2],"freely":[3],"available":[4,15],"at":[5,16],"http://rnacommender.disi.unitn.it":[6],"CONTACT:":[7],"gianluca.corrado@unitn.it":[8],"or":[9],"andrea.passerini@unitn.itSupplementary":[10],"information:":[11],"Supplementary":[12],"data":[13],"are":[14],"Bioinformatics":[17],"online.":[18]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":6}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
