{"id":"https://openalex.org/W2488856559","doi":"https://doi.org/10.1093/bioinformatics/btw496","title":"PcircRNA_finder: a software for circRNA prediction in plants","display_name":"PcircRNA_finder: a software for circRNA prediction in plants","publication_year":2016,"publication_date":"2016-08-04","ids":{"openalex":"https://openalex.org/W2488856559","doi":"https://doi.org/10.1093/bioinformatics/btw496","mag":"2488856559","pmid":"https://pubmed.ncbi.nlm.nih.gov/27493192"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btw496","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw496","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/22/3528/16920914/btw496.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/22/3528/16920914/btw496.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100379281","display_name":"Li Chen","orcid":"https://orcid.org/0000-0002-8200-7681"},"institutions":[{"id":"https://openalex.org/I4210158190","display_name":"Institute of Crop Sciences","ror":"https://ror.org/051abs833","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210158190"]},{"id":"https://openalex.org/I4210148697","display_name":"Institute of Bioinformatics","ror":"https://ror.org/04hqfvm50","country_code":"IN","type":"nonprofit","lineage":["https://openalex.org/I4210148697"]}],"countries":["CN","IN"],"is_corresponding":false,"raw_author_name":"Li Chen","raw_affiliation_strings":["1Institute of Crop Sciences & Institute of Bioinformatics"],"affiliations":[{"raw_affiliation_string":"1Institute of Crop Sciences & Institute of Bioinformatics","institution_ids":["https://openalex.org/I4210148697","https://openalex.org/I4210158190"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101549119","display_name":"Yongyi Yu","orcid":"https://orcid.org/0000-0002-9012-3463"},"institutions":[{"id":"https://openalex.org/I4210148697","display_name":"Institute of Bioinformatics","ror":"https://ror.org/04hqfvm50","country_code":"IN","type":"nonprofit","lineage":["https://openalex.org/I4210148697"]},{"id":"https://openalex.org/I4210158190","display_name":"Institute of Crop Sciences","ror":"https://ror.org/051abs833","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210158190"]}],"countries":["CN","IN"],"is_corresponding":false,"raw_author_name":"Yongyi Yu","raw_affiliation_strings":["1Institute of Crop Sciences & Institute of Bioinformatics"],"affiliations":[{"raw_affiliation_string":"1Institute of Crop Sciences & Institute of Bioinformatics","institution_ids":["https://openalex.org/I4210148697","https://openalex.org/I4210158190"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101819311","display_name":"Xinchen Zhang","orcid":"https://orcid.org/0000-0002-0354-704X"},"institutions":[{"id":"https://openalex.org/I4210158190","display_name":"Institute of Crop Sciences","ror":"https://ror.org/051abs833","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210158190"]},{"id":"https://openalex.org/I4210148697","display_name":"Institute of Bioinformatics","ror":"https://ror.org/04hqfvm50","country_code":"IN","type":"nonprofit","lineage":["https://openalex.org/I4210148697"]}],"countries":["CN","IN"],"is_corresponding":false,"raw_author_name":"Xinchen Zhang","raw_affiliation_strings":["1Institute of Crop Sciences & Institute of Bioinformatics"],"affiliations":[{"raw_affiliation_string":"1Institute of Crop Sciences & Institute of Bioinformatics","institution_ids":["https://openalex.org/I4210148697","https://openalex.org/I4210158190"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100322216","display_name":"Chen Liu","orcid":"https://orcid.org/0009-0003-0430-6146"},"institutions":[{"id":"https://openalex.org/I4210148697","display_name":"Institute of Bioinformatics","ror":"https://ror.org/04hqfvm50","country_code":"IN","type":"nonprofit","lineage":["https://openalex.org/I4210148697"]},{"id":"https://openalex.org/I4210158190","display_name":"Institute of Crop Sciences","ror":"https://ror.org/051abs833","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210158190"]}],"countries":["CN","IN"],"is_corresponding":false,"raw_author_name":"Chen Liu","raw_affiliation_strings":["1Institute of Crop Sciences & Institute of Bioinformatics"],"affiliations":[{"raw_affiliation_string":"1Institute of Crop Sciences & Institute of Bioinformatics","institution_ids":["https://openalex.org/I4210148697","https://openalex.org/I4210158190"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083333100","display_name":"Chuyu Ye","orcid":"https://orcid.org/0000-0003-0903-0356"},"institutions":[{"id":"https://openalex.org/I4210158190","display_name":"Institute of Crop Sciences","ror":"https://ror.org/051abs833","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210158190"]},{"id":"https://openalex.org/I4210148697","display_name":"Institute of Bioinformatics","ror":"https://ror.org/04hqfvm50","country_code":"IN","type":"nonprofit","lineage":["https://openalex.org/I4210148697"]}],"countries":["CN","IN"],"is_corresponding":false,"raw_author_name":"Chuyu Ye","raw_affiliation_strings":["1Institute of Crop Sciences & Institute of Bioinformatics"],"affiliations":[{"raw_affiliation_string":"1Institute of Crop Sciences & Institute of Bioinformatics","institution_ids":["https://openalex.org/I4210148697","https://openalex.org/I4210158190"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5007314776","display_name":"Longjiang Fan","orcid":"https://orcid.org/0000-0003-4846-0500"},"institutions":[{"id":"https://openalex.org/I4210148697","display_name":"Institute of Bioinformatics","ror":"https://ror.org/04hqfvm50","country_code":"IN","type":"nonprofit","lineage":["https://openalex.org/I4210148697"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]},{"id":"https://openalex.org/I4210158190","display_name":"Institute of Crop Sciences","ror":"https://ror.org/051abs833","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210158190"]}],"countries":["CN","IN"],"is_corresponding":true,"raw_author_name":"Longjiang Fan","raw_affiliation_strings":["1Institute of Crop Sciences & Institute of Bioinformatics","2Research Center of Air Pollution and Health, Zhejiang University, Hangzhou 310058, China"],"affiliations":[{"raw_affiliation_string":"1Institute of Crop Sciences & Institute of Bioinformatics","institution_ids":["https://openalex.org/I4210148697","https://openalex.org/I4210158190"]},{"raw_affiliation_string":"2Research Center of Air Pollution and Health, Zhejiang University, Hangzhou 310058, China","institution_ids":["https://openalex.org/I76130692"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5007314776"],"corresponding_institution_ids":["https://openalex.org/I4210148697","https://openalex.org/I4210158190","https://openalex.org/I76130692"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":4.3513,"has_fulltext":false,"cited_by_count":74,"citation_normalized_percentile":{"value":0.94709134,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"32","issue":"22","first_page":"3528","last_page":"3529"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9631999731063843,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6607551574707031},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6565462350845337},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.32480528950691223},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.14455485343933105}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6607551574707031},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6565462350845337},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32480528950691223},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.14455485343933105}],"mesh":[{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btw496","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw496","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/22/3528/16920914/btw496.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27493192","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27493192","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:5181569","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5181569","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btw496","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw496","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/22/3528/16920914/btw496.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5023029930","display_name":null,"funder_award_id":"91435111","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7134211384","display_name":null,"funder_award_id":"2015CB150200","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2488856559.pdf","grobid_xml":"https://content.openalex.org/works/W2488856559.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W1566841623","https://openalex.org/W1966411071","https://openalex.org/W1981726010","https://openalex.org/W2017919052","https://openalex.org/W2029989907","https://openalex.org/W2051477788","https://openalex.org/W2055493067","https://openalex.org/W2058835062","https://openalex.org/W2064165694","https://openalex.org/W2105434771","https://openalex.org/W2108206849","https://openalex.org/W2109322710","https://openalex.org/W2115171906","https://openalex.org/W2126144698","https://openalex.org/W2139399606","https://openalex.org/W2152719653","https://openalex.org/W2169456326","https://openalex.org/W2177654732","https://openalex.org/W2286014095"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"http://ibi.zju.edu.cn/bioinplant/tools/manual.htm":[0],"CONTACT:":[1],"fanlj@zju.edu.cnSupplementary":[2],"information:":[3],"Supplementary":[4],"data":[5],"are":[6],"available":[7],"at":[8],"Bioinformatics":[9],"online.":[10]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":17},{"year":2020,"cited_by_count":12},{"year":2019,"cited_by_count":10},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
