{"id":"https://openalex.org/W1956454952","doi":"https://doi.org/10.1093/bioinformatics/btw494","title":"Simultaneous gene finding in multiple genomes","display_name":"Simultaneous gene finding in multiple genomes","publication_year":2016,"publication_date":"2016-07-27","ids":{"openalex":"https://openalex.org/W1956454952","doi":"https://doi.org/10.1093/bioinformatics/btw494","mag":"1956454952","pmid":"https://pubmed.ncbi.nlm.nih.gov/27466621"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btw494","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw494","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/22/3388/24342995/btw494.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/22/3388/24342995/btw494.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103237585","display_name":"Stefanie K\u00f6nig","orcid":"https://orcid.org/0009-0009-8979-3134"},"institutions":[{"id":"https://openalex.org/I36522303","display_name":"Universit\u00e4t Greifswald","ror":"https://ror.org/00r1edq15","country_code":"DE","type":"education","lineage":["https://openalex.org/I36522303"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Stefanie K\u00f6nig","raw_affiliation_strings":["Institute of Mathematics and Computer Science, University of Greifswald, Greifswald, 17487, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Mathematics and Computer Science, University of Greifswald, Greifswald, 17487, Germany","institution_ids":["https://openalex.org/I36522303"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087647893","display_name":"Lars Romoth","orcid":null},"institutions":[{"id":"https://openalex.org/I36522303","display_name":"Universit\u00e4t Greifswald","ror":"https://ror.org/00r1edq15","country_code":"DE","type":"education","lineage":["https://openalex.org/I36522303"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Lars W. Romoth","raw_affiliation_strings":["Institute of Mathematics and Computer Science, University of Greifswald, Greifswald, 17487, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Mathematics and Computer Science, University of Greifswald, Greifswald, 17487, Germany","institution_ids":["https://openalex.org/I36522303"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041030286","display_name":"Lizzy Gerischer","orcid":null},"institutions":[{"id":"https://openalex.org/I36522303","display_name":"Universit\u00e4t Greifswald","ror":"https://ror.org/00r1edq15","country_code":"DE","type":"education","lineage":["https://openalex.org/I36522303"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Lizzy Gerischer","raw_affiliation_strings":["Institute of Mathematics and Computer Science, University of Greifswald, Greifswald, 17487, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Mathematics and Computer Science, University of Greifswald, Greifswald, 17487, Germany","institution_ids":["https://openalex.org/I36522303"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025051195","display_name":"Mario Stanke","orcid":"https://orcid.org/0000-0001-8696-0384"},"institutions":[{"id":"https://openalex.org/I36522303","display_name":"Universit\u00e4t Greifswald","ror":"https://ror.org/00r1edq15","country_code":"DE","type":"education","lineage":["https://openalex.org/I36522303"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Mario Stanke","raw_affiliation_strings":["Institute of Mathematics and Computer Science, University of Greifswald, Greifswald, 17487, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Mathematics and Computer Science, University of Greifswald, Greifswald, 17487, Germany","institution_ids":["https://openalex.org/I36522303"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5025051195","https://openalex.org/A5103237585"],"corresponding_institution_ids":["https://openalex.org/I36522303"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":4.8807,"has_fulltext":true,"cited_by_count":77,"citation_normalized_percentile":{"value":0.95384554,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"32","issue":"22","first_page":"3388","last_page":"3395"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.8419722318649292},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5648723840713501},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5570950508117676},{"id":"https://openalex.org/keywords/gene-prediction","display_name":"Gene prediction","score":0.5324882864952087},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5203125476837158},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.50071120262146},{"id":"https://openalex.org/keywords/genome-project","display_name":"Genome project","score":0.46626314520835876},{"id":"https://openalex.org/keywords/comparative-genomics","display_name":"Comparative genomics","score":0.4380742013454437},{"id":"https://openalex.org/keywords/clade","display_name":"Clade","score":0.41267046332359314},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.366036981344223},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.34021925926208496},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.3260178565979004},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.30928486585617065}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.8419722318649292},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5648723840713501},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5570950508117676},{"id":"https://openalex.org/C105565629","wikidata":"https://www.wikidata.org/wiki/Q1248292","display_name":"Gene prediction","level":4,"score":0.5324882864952087},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5203125476837158},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.50071120262146},{"id":"https://openalex.org/C89566754","wikidata":"https://www.wikidata.org/wiki/Q2273828","display_name":"Genome project","level":4,"score":0.46626314520835876},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.4380742013454437},{"id":"https://openalex.org/C44465124","wikidata":"https://www.wikidata.org/wiki/Q713623","display_name":"Clade","level":4,"score":0.41267046332359314},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.366036981344223},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.34021925926208496},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.3260178565979004},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.30928486585617065}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005091","descriptor_name":"Exons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005091","descriptor_name":"Exons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005091","descriptor_name":"Exons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005091","descriptor_name":"Exons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btw494","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw494","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/22/3388/24342995/btw494.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27466621","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27466621","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:5860283","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5860283","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btw494","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw494","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/22/3388/24342995/btw494.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.7599999904632568}],"awards":[{"id":"https://openalex.org/G2852997103","display_name":null,"funder_award_id":"GRK 1870","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8330397625","display_name":null,"funder_award_id":"Funding","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320307874","display_name":"Wellcome","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320322572","display_name":"Studienstiftung des Deutschen Volkes","ror":"https://ror.org/05xwwfy96"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1956454952.pdf","grobid_xml":"https://content.openalex.org/works/W1956454952.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W1767772592","https://openalex.org/W1812474519","https://openalex.org/W1903393809","https://openalex.org/W1921457844","https://openalex.org/W1964264557","https://openalex.org/W1976049389","https://openalex.org/W1987423713","https://openalex.org/W1996700726","https://openalex.org/W2031611770","https://openalex.org/W2048286155","https://openalex.org/W2062345582","https://openalex.org/W2070510621","https://openalex.org/W2076428552","https://openalex.org/W2098937968","https://openalex.org/W2099762535","https://openalex.org/W2108787198","https://openalex.org/W2112132489","https://openalex.org/W2112814753","https://openalex.org/W2117688129","https://openalex.org/W2118533197","https://openalex.org/W2127322768","https://openalex.org/W2131538180","https://openalex.org/W2142418779","https://openalex.org/W2149467186","https://openalex.org/W2156296160","https://openalex.org/W2156976607","https://openalex.org/W2158592738","https://openalex.org/W2162136869","https://openalex.org/W2163406035","https://openalex.org/W2166825456","https://openalex.org/W2169456326","https://openalex.org/W2320107710","https://openalex.org/W2582743722","https://openalex.org/W2797388202","https://openalex.org/W4233815609"],"related_works":["https://openalex.org/W2162782320","https://openalex.org/W3111061871","https://openalex.org/W2009940763","https://openalex.org/W2114034054","https://openalex.org/W4232413416","https://openalex.org/W45826765","https://openalex.org/W1585937270","https://openalex.org/W2537312848","https://openalex.org/W2059565715","https://openalex.org/W2417531346"],"abstract_inverted_index":{"The":[0],"method":[1],"is":[2],"implemented":[3],"in":[4],"C":[5],"++":[6],"as":[7],"part":[8],"of":[9],"Augustus":[10],"and":[11],"available":[12,25],"open":[13],"source":[14],"at":[15,26],"http://bioinf.uni-greifswald.de/augustus/":[16],"CONTACT:":[17],"stefaniekoenig@ymail.com":[18],"or":[19],"mario.stanke@uni-greifswald.deSupplementary":[20],"information:":[21],"Supplementary":[22],"data":[23],"are":[24],"Bioinformatics":[27],"online.":[28]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":12},{"year":2020,"cited_by_count":13},{"year":2019,"cited_by_count":10},{"year":2018,"cited_by_count":12},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
