{"id":"https://openalex.org/W2485374661","doi":"https://doi.org/10.1093/bioinformatics/btw486","title":"Drug drug interaction extraction from biomedical literature using syntax convolutional neural network","display_name":"Drug drug interaction extraction from biomedical literature using syntax convolutional neural network","publication_year":2016,"publication_date":"2016-07-27","ids":{"openalex":"https://openalex.org/W2485374661","doi":"https://doi.org/10.1093/bioinformatics/btw486","mag":"2485374661","pmid":"https://pubmed.ncbi.nlm.nih.gov/27466626"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btw486","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw486","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/22/3444/16920664/btw486.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/22/3444/16920664/btw486.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042620633","display_name":"Zhehuan Zhao","orcid":"https://orcid.org/0000-0002-5001-1352"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhehuan Zhao","raw_affiliation_strings":["1College of Computer Science and Technology, Dalian University of Technology, Dalian 116024, China"],"affiliations":[{"raw_affiliation_string":"1College of Computer Science and Technology, Dalian University of Technology, Dalian 116024, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051597671","display_name":"Zhihao Yang","orcid":"https://orcid.org/0000-0001-6186-2024"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhihao Yang","raw_affiliation_strings":["1College of Computer Science and Technology, Dalian University of Technology, Dalian 116024, China"],"affiliations":[{"raw_affiliation_string":"1College of Computer Science and Technology, Dalian University of Technology, Dalian 116024, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100619435","display_name":"Ling Luo","orcid":"https://orcid.org/0000-0002-5141-0259"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ling Luo","raw_affiliation_strings":["1College of Computer Science and Technology, Dalian University of Technology, Dalian 116024, China"],"affiliations":[{"raw_affiliation_string":"1College of Computer Science and Technology, Dalian University of Technology, Dalian 116024, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023931221","display_name":"Hongfei Lin","orcid":"https://orcid.org/0000-0003-0872-7688"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongfei Lin","raw_affiliation_strings":["1College of Computer Science and Technology, Dalian University of Technology, Dalian 116024, China"],"affiliations":[{"raw_affiliation_string":"1College of Computer Science and Technology, Dalian University of Technology, Dalian 116024, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100370328","display_name":"Jian Wang","orcid":"https://orcid.org/0000-0001-5184-7023"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jian Wang","raw_affiliation_strings":["1College of Computer Science and Technology, Dalian University of Technology, Dalian 116024, China"],"affiliations":[{"raw_affiliation_string":"1College of Computer Science and Technology, Dalian University of Technology, Dalian 116024, China","institution_ids":["https://openalex.org/I27357992"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5051597671"],"corresponding_institution_ids":["https://openalex.org/I27357992"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":14.2721,"has_fulltext":false,"cited_by_count":238,"citation_normalized_percentile":{"value":0.9919442,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"32","issue":"22","first_page":"3444","last_page":"3453"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.988099992275238,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.84275221824646},{"id":"https://openalex.org/keywords/word-embedding","display_name":"Word embedding","score":0.7157541513442993},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.6300738453865051},{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.5973526239395142},{"id":"https://openalex.org/keywords/sentence","display_name":"Sentence","score":0.5814100503921509},{"id":"https://openalex.org/keywords/softmax-function","display_name":"Softmax function","score":0.5652188062667847},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.5524852275848389},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.549723207950592},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.5455448627471924},{"id":"https://openalex.org/keywords/word2vec","display_name":"Word2vec","score":0.5280107855796814},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4461916387081146},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4345194101333618},{"id":"https://openalex.org/keywords/syntax","display_name":"Syntax","score":0.42937958240509033},{"id":"https://openalex.org/keywords/encoder","display_name":"Encoder","score":0.41733014583587646},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.07873302698135376}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.84275221824646},{"id":"https://openalex.org/C2777462759","wikidata":"https://www.wikidata.org/wiki/Q18395344","display_name":"Word embedding","level":3,"score":0.7157541513442993},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.6300738453865051},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.5973526239395142},{"id":"https://openalex.org/C2777530160","wikidata":"https://www.wikidata.org/wiki/Q41796","display_name":"Sentence","level":2,"score":0.5814100503921509},{"id":"https://openalex.org/C188441871","wikidata":"https://www.wikidata.org/wiki/Q7554146","display_name":"Softmax function","level":3,"score":0.5652188062667847},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.5524852275848389},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.549723207950592},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.5455448627471924},{"id":"https://openalex.org/C2776461190","wikidata":"https://www.wikidata.org/wiki/Q22673982","display_name":"Word2vec","level":3,"score":0.5280107855796814},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4461916387081146},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4345194101333618},{"id":"https://openalex.org/C60048249","wikidata":"https://www.wikidata.org/wiki/Q37437","display_name":"Syntax","level":2,"score":0.42937958240509033},{"id":"https://openalex.org/C118505674","wikidata":"https://www.wikidata.org/wiki/Q42586063","display_name":"Encoder","level":2,"score":0.41733014583587646},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.07873302698135376},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btw486","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw486","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/22/3444/16920664/btw486.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27466626","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27466626","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:5181565","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5181565","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btw486","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw486","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/22/3444/16920664/btw486.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.41999998688697815}],"awards":[{"id":"https://openalex.org/G1874822141","display_name":null,"funder_award_id":"61572102","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3061476762","display_name":null,"funder_award_id":"61070098","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G327815063","display_name":null,"funder_award_id":"61340020","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3553340515","display_name":null,"funder_award_id":"61572098","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8108786737","display_name":null,"funder_award_id":"61272373","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2485374661.pdf","grobid_xml":"https://content.openalex.org/works/W2485374661.grobid-xml"},"referenced_works_count":51,"referenced_works":["https://openalex.org/W4919037","https://openalex.org/W947140380","https://openalex.org/W1550258693","https://openalex.org/W1551842868","https://openalex.org/W1750263989","https://openalex.org/W1965893653","https://openalex.org/W2015452969","https://openalex.org/W2058907739","https://openalex.org/W2067704478","https://openalex.org/W2089335003","https://openalex.org/W2097960255","https://openalex.org/W2099779943","https://openalex.org/W2102409316","https://openalex.org/W2135192531","https://openalex.org/W2137052779","https://openalex.org/W2138627627","https://openalex.org/W2140833774","https://openalex.org/W2141599568","https://openalex.org/W2157791002","https://openalex.org/W2158899491","https://openalex.org/W2159583324","https://openalex.org/W2163605009","https://openalex.org/W2163922914","https://openalex.org/W2164019165","https://openalex.org/W2165496929","https://openalex.org/W2167277498","https://openalex.org/W2170189740","https://openalex.org/W2172000360","https://openalex.org/W2184865040","https://openalex.org/W2250521169","https://openalex.org/W2250619635","https://openalex.org/W2251104810","https://openalex.org/W2251756410","https://openalex.org/W2251771443","https://openalex.org/W2251957306","https://openalex.org/W2794139534","https://openalex.org/W2794304292","https://openalex.org/W2952230511","https://openalex.org/W2998704965","https://openalex.org/W3004533406","https://openalex.org/W3156030440","https://openalex.org/W4285719527","https://openalex.org/W6675401909","https://openalex.org/W6680532216","https://openalex.org/W6680887930","https://openalex.org/W6680890276","https://openalex.org/W6682953061","https://openalex.org/W6683738474","https://openalex.org/W6684191040","https://openalex.org/W6684674457","https://openalex.org/W6691649953"],"related_works":["https://openalex.org/W2946409105","https://openalex.org/W2985392712","https://openalex.org/W4388996947","https://openalex.org/W3133567596","https://openalex.org/W2798009317","https://openalex.org/W3203949288","https://openalex.org/W4382201653","https://openalex.org/W3175524270","https://openalex.org/W2998070955","https://openalex.org/W2770162183"],"abstract_inverted_index":{"The":[0],"source":[1],"code":[2],"is":[3],"available":[4,16],"for":[5],"academic":[6],"use":[7],"at":[8,17],"http://202.118.75.18:8080/DDI/SCNN-DDI.zip":[9],"CONTACT:":[10],"yangzh@dlut.edu.cnSupplementary":[11],"information:":[12],"Supplementary":[13],"data":[14],"are":[15],"Bioinformatics":[18],"online.":[19]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":17},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":27},{"year":2022,"cited_by_count":31},{"year":2021,"cited_by_count":35},{"year":2020,"cited_by_count":32},{"year":2019,"cited_by_count":33},{"year":2018,"cited_by_count":25},{"year":2017,"cited_by_count":23},{"year":2016,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
