{"id":"https://openalex.org/W2508423234","doi":"https://doi.org/10.1093/bioinformatics/btw467","title":"A program for verification of phylogenetic network models","display_name":"A program for verification of phylogenetic network models","publication_year":2016,"publication_date":"2016-08-29","ids":{"openalex":"https://openalex.org/W2508423234","doi":"https://doi.org/10.1093/bioinformatics/btw467","mag":"2508423234","pmid":"https://pubmed.ncbi.nlm.nih.gov/27587668"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btw467","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw467","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/17/i503/24151452/btw467.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/17/i503/24151452/btw467.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069875593","display_name":"Andreas D. M. Gunawan","orcid":null},"institutions":[{"id":"https://openalex.org/I530967","display_name":"Toronto Metropolitan University","ror":"https://ror.org/05g13zd79","country_code":"CA","type":"education","lineage":["https://openalex.org/I530967"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Andreas DM Gunawan","raw_affiliation_strings":["Department of Mathematics"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics","institution_ids":["https://openalex.org/I530967"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050387311","display_name":"Bingxin Lu","orcid":"https://orcid.org/0000-0002-0606-5150"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Bingxin Lu","raw_affiliation_strings":["Department of Computer Science, National University of Singapore, Singapore 117417, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, National University of Singapore, Singapore 117417, Singapore","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012300835","display_name":"Louxin Zhang","orcid":"https://orcid.org/0000-0003-0260-824X"},"institutions":[{"id":"https://openalex.org/I530967","display_name":"Toronto Metropolitan University","ror":"https://ror.org/05g13zd79","country_code":"CA","type":"education","lineage":["https://openalex.org/I530967"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Louxin Zhang","raw_affiliation_strings":["Department of Mathematics"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics","institution_ids":["https://openalex.org/I530967"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5012300835"],"corresponding_institution_ids":["https://openalex.org/I530967"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.1823,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":{"value":0.91805092,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"32","issue":"17","first_page":"i503","last_page":"i510"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.5595999956130981,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.5595999956130981,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.4207000136375427,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11354","display_name":"Evolution and Paleontology Studies","score":0.0015999999595806003,"subfield":{"id":"https://openalex.org/subfields/1911","display_name":"Paleontology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.7460154294967651},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6136435866355896},{"id":"https://openalex.org/keywords/phylogenetic-network","display_name":"Phylogenetic network","score":0.48496532440185547},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.27499547600746155},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17590925097465515},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07199639081954956}],"concepts":[{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.7460154294967651},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6136435866355896},{"id":"https://openalex.org/C26619641","wikidata":"https://www.wikidata.org/wiki/Q3142246","display_name":"Phylogenetic network","level":4,"score":0.48496532440185547},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.27499547600746155},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17590925097465515},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07199639081954956}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btw467","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw467","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/17/i503/24151452/btw467.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27587668","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27587668","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/17/i503","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/17/i503","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btw467","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw467","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/17/i503/24151452/btw467.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W1940514743","https://openalex.org/W1997224462","https://openalex.org/W2005892692","https://openalex.org/W2022927779","https://openalex.org/W2054547415","https://openalex.org/W2062962705","https://openalex.org/W2078151980","https://openalex.org/W2097276024","https://openalex.org/W2098558111","https://openalex.org/W2101991559","https://openalex.org/W2107385756","https://openalex.org/W2109419864","https://openalex.org/W2112400707","https://openalex.org/W2117665706","https://openalex.org/W2128431749","https://openalex.org/W2143424400","https://openalex.org/W2144462058","https://openalex.org/W2149533687","https://openalex.org/W2168907268","https://openalex.org/W2243442814","https://openalex.org/W2266356354","https://openalex.org/W2339386068","https://openalex.org/W2484986946","https://openalex.org/W2964159213","https://openalex.org/W4243187486"],"related_works":["https://openalex.org/W4254268221","https://openalex.org/W2951650999","https://openalex.org/W2038264393","https://openalex.org/W147282674","https://openalex.org/W2112400707","https://openalex.org/W4300585845","https://openalex.org/W2101991559","https://openalex.org/W2132010001","https://openalex.org/W2152997891","https://openalex.org/W2951248153"],"abstract_inverted_index":{"MOTIVATION:":[0],"Genetic":[1],"material":[2],"is":[3,61,100,117,125,149,157,175],"transferred":[4],"in":[5,17,95,111,151],"a":[6,32,58,71,97,112,146],"non-reproductive":[7,39],"manner":[8],"across":[9],"species":[10],"more":[11,28],"frequently":[12],"than":[13],"commonly":[14],"thought,":[15],"particularly":[16],"the":[18,55,74,82,85,120,160,163],"bacteria":[19],"kingdom.":[20],"On":[21,54],"one":[22],"hand,":[23,57],"extant":[24],"genomes":[25],"are":[26,81,109,187],"thus":[27],"properly":[29],"considered":[30],"as":[31],"fusion":[33],"product":[34],"of":[35,89,162,167],"both":[36],"reproductive":[37],"and":[38,64,79,87],"genetic":[40],"transfers.":[41],"This":[42,115],"has":[43,65],"motivated":[44],"researchers":[45],"to":[46,50],"adopt":[47],"phylogenetic":[48,77,90,107,113,130,147,154,168],"networks":[49,80],"study":[51],"genome":[52],"evolution.":[53],"other":[56],"gene's":[59],"evolution":[60],"usually":[62],"tree-like":[63],"been":[66],"studied":[67],"for":[68,84,128,141,177],"over":[69],"half":[70],"century.":[72],"Accordingly,":[73],"relationships":[75],"between":[76],"trees":[78,108],"basis":[83,161],"reconstruction":[86],"verification":[88],"networks.":[91,131,169],"One":[92],"important":[93],"problem":[94,116],"verifying":[96],"network":[98],"model":[99],"determining":[101,142],"whether":[102,143],"or":[103,144],"not":[104,145],"certain":[105],"existing":[106],"displayed":[110,150],"network.":[114,155],"formally":[118],"called":[119],"tree":[121,148],"containment":[122],"problem.":[123],"It":[124,156],"NP-complete":[126],"even":[127],"binary":[129],"RESULTS:":[132],"We":[133],"design":[134],"an":[135,152],"exponential":[136],"time":[137],"but":[138],"efficient":[139],"method":[140],"arbitrary":[153],"developed":[158],"on":[159,179],"so-called":[164],"reticulation-visible":[165],"property":[166],"AVAILABILITY":[170],"AND":[171],"IMPLEMENTATION:":[172],"A":[173],"C-program":[174],"available":[176,188],"download":[178],"http://www.math.nus.edu.sg/\u223cmatzlx/tcp_package":[180],"CONTACT:":[181],"matzlx@nus.edu.sg":[182],"SUPPLEMENTARY":[183],"INFORMATION:":[184],"Supplementary":[185],"data":[186],"at":[189],"Bioinformatics":[190],"online.":[191]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":3}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
