{"id":"https://openalex.org/W2509651715","doi":"https://doi.org/10.1093/bioinformatics/btw440","title":"Simulated linear test applied to quantitative proteomics","display_name":"Simulated linear test applied to quantitative proteomics","publication_year":2016,"publication_date":"2016-08-29","ids":{"openalex":"https://openalex.org/W2509651715","doi":"https://doi.org/10.1093/bioinformatics/btw440","mag":"2509651715","pmid":"https://pubmed.ncbi.nlm.nih.gov/27587692"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btw440","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw440","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/17/i702/24151147/btw440.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/17/i702/24151147/btw440.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031794100","display_name":"TV Pham","orcid":null},"institutions":[{"id":"https://openalex.org/I911458345","display_name":"Amsterdam UMC Location VUmc","ror":"https://ror.org/00q6h8f30","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I4210151833","https://openalex.org/I911458345"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"TV Pham","raw_affiliation_strings":["OncoProteomics Laboratory, Department of Medical Oncology, VU University Medical Center, 1081 HV Amsterdam, The Netherlands"],"affiliations":[{"raw_affiliation_string":"OncoProteomics Laboratory, Department of Medical Oncology, VU University Medical Center, 1081 HV Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I911458345"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084043525","display_name":"Connie R. Jim\u00e9nez","orcid":"https://orcid.org/0000-0002-3103-4508"},"institutions":[{"id":"https://openalex.org/I911458345","display_name":"Amsterdam UMC Location VUmc","ror":"https://ror.org/00q6h8f30","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I4210151833","https://openalex.org/I911458345"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"CR Jimenez","raw_affiliation_strings":["OncoProteomics Laboratory, Department of Medical Oncology, VU University Medical Center, 1081 HV Amsterdam, The Netherlands"],"affiliations":[{"raw_affiliation_string":"OncoProteomics Laboratory, Department of Medical Oncology, VU University Medical Center, 1081 HV Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I911458345"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5031794100"],"corresponding_institution_ids":["https://openalex.org/I911458345"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.2275,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.64968823,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"32","issue":"17","first_page":"i702","last_page":"i709"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7131189107894897},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.5562793016433716},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5222426652908325},{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.4965386986732483},{"id":"https://openalex.org/keywords/variation","display_name":"Variation (astronomy)","score":0.45828408002853394},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.4541645646095276},{"id":"https://openalex.org/keywords/quantitative-proteomics","display_name":"Quantitative proteomics","score":0.4423012435436249},{"id":"https://openalex.org/keywords/statistical-hypothesis-testing","display_name":"Statistical hypothesis testing","score":0.43794697523117065},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4341951310634613},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.18660825490951538},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.14073318243026733},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12220644950866699}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7131189107894897},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.5562793016433716},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5222426652908325},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.4965386986732483},{"id":"https://openalex.org/C2778334786","wikidata":"https://www.wikidata.org/wiki/Q1586270","display_name":"Variation (astronomy)","level":2,"score":0.45828408002853394},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.4541645646095276},{"id":"https://openalex.org/C80311884","wikidata":"https://www.wikidata.org/wiki/Q7268939","display_name":"Quantitative proteomics","level":4,"score":0.4423012435436249},{"id":"https://openalex.org/C87007009","wikidata":"https://www.wikidata.org/wiki/Q210832","display_name":"Statistical hypothesis testing","level":2,"score":0.43794697523117065},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4341951310634613},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.18660825490951538},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.14073318243026733},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12220644950866699},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C44870925","wikidata":"https://www.wikidata.org/wiki/Q37547","display_name":"Astrophysics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D016014","descriptor_name":"Linear Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016014","descriptor_name":"Linear Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016014","descriptor_name":"Linear Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btw440","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw440","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/17/i702/24151147/btw440.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27587692","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27587692","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pure.amsterdamumc.nl:publications/8fe03249-d4be-4060-b08b-7550d6d5f7ae","is_oa":true,"landing_page_url":"https://pure.amsterdamumc.nl/en/publications/8fe03249-d4be-4060-b08b-7550d6d5f7ae","pdf_url":"https://pure.amsterdamumc.nl/files/159872194/Simulated-linear-test-applied-to-quantitative-proteomics.pdf","source":{"id":"https://openalex.org/S7407055222","display_name":"Pure Amsterdam UMC","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Pham, T V & Jimenez, C R 2016, 'Simulated linear test applied to quantitative proteomics', Bioinformatics, vol. 32, no. 17, pp. 702-709. https://doi.org/10.1093/bioinformatics/btw440","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/17/i702","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/17/i702","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:vumc:oai:pure.atira.dk:publications/3ed4692d-1abd-472b-840e-7fec5bc785eb","is_oa":false,"landing_page_url":"https://research.vumc.nl/en/publications/3ed4692d-1abd-472b-840e-7fec5bc785eb","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 32(17), 702 - 709. Oxford University Press","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btw440","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw440","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/17/i702/24151147/btw440.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320329805","display_name":"Cancer Center Amsterdam","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2509651715.pdf","grobid_xml":"https://content.openalex.org/works/W2509651715.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W1991518289","https://openalex.org/W1992014004","https://openalex.org/W2014602125","https://openalex.org/W2019841176","https://openalex.org/W2020328455","https://openalex.org/W2032601646","https://openalex.org/W2064444082","https://openalex.org/W2080752012","https://openalex.org/W2081098333","https://openalex.org/W2081357922","https://openalex.org/W2106490639","https://openalex.org/W2107328434","https://openalex.org/W2117180217","https://openalex.org/W2130116522","https://openalex.org/W2131856634","https://openalex.org/W2132721989","https://openalex.org/W2137526110","https://openalex.org/W2152239989","https://openalex.org/W2154431984","https://openalex.org/W2293738123","https://openalex.org/W2801490189","https://openalex.org/W4213117884","https://openalex.org/W6654346678"],"related_works":["https://openalex.org/W2160416873","https://openalex.org/W3081950544","https://openalex.org/W3089696757","https://openalex.org/W2000259163","https://openalex.org/W2374027747","https://openalex.org/W1990519872","https://openalex.org/W3005464483","https://openalex.org/W1574322319","https://openalex.org/W94201945","https://openalex.org/W2097713953"],"abstract_inverted_index":{":":[0],"t.pham@vumc.nl.":[1]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2019,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
