{"id":"https://openalex.org/W2432718434","doi":"https://doi.org/10.1093/bioinformatics/btw433","title":"Drug response prediction by inferring pathway-response associations with kernelized Bayesian matrix factorization","display_name":"Drug response prediction by inferring pathway-response associations with kernelized Bayesian matrix factorization","publication_year":2016,"publication_date":"2016-08-29","ids":{"openalex":"https://openalex.org/W2432718434","doi":"https://doi.org/10.1093/bioinformatics/btw433","mag":"2432718434","pmid":"https://pubmed.ncbi.nlm.nih.gov/27587662"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btw433","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw433","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/17/i455/24151036/btw433.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/17/i455/24151036/btw433.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051333340","display_name":"Muhammad Ammad-ud-din","orcid":"https://orcid.org/0009-0001-4464-5295"},"institutions":[{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Muhammad Ammad-ud-din","raw_affiliation_strings":["Helsinki Institute for Information Technology HIIT, Department of Computer Science, Aalto University, Espoo 02150, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Helsinki Institute for Information Technology HIIT, Department of Computer Science, Aalto University, Espoo 02150, Finland","institution_ids":["https://openalex.org/I32943570","https://openalex.org/I9927081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028161029","display_name":"Suleiman A. Khan","orcid":"https://orcid.org/0000-0002-0823-4042"},"institutions":[{"id":"https://openalex.org/I4210133586","display_name":"Institute for Molecular Medicine Finland","ror":"https://ror.org/030sbze61","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]},{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Suleiman A. Khan","raw_affiliation_strings":["Institute for Molecular Medicine Finland FIMM, University of Helsinki, Helsinki 00290, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Molecular Medicine Finland FIMM, University of Helsinki, Helsinki 00290, Finland","institution_ids":["https://openalex.org/I4210133586","https://openalex.org/I133731052"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032196301","display_name":"Disha Malani","orcid":"https://orcid.org/0000-0001-9614-3281"},"institutions":[{"id":"https://openalex.org/I4210133586","display_name":"Institute for Molecular Medicine Finland","ror":"https://ror.org/030sbze61","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]},{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Disha Malani","raw_affiliation_strings":["Institute for Molecular Medicine Finland FIMM, University of Helsinki, Helsinki 00290, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Molecular Medicine Finland FIMM, University of Helsinki, Helsinki 00290, Finland","institution_ids":["https://openalex.org/I4210133586","https://openalex.org/I133731052"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033369123","display_name":"Astrid Murum\u00e4gi","orcid":"https://orcid.org/0000-0002-7797-188X"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I4210133586","display_name":"Institute for Molecular Medicine Finland","ror":"https://ror.org/030sbze61","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Astrid Murum\u00e4gi","raw_affiliation_strings":["Institute for Molecular Medicine Finland FIMM, University of Helsinki, Helsinki 00290, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Molecular Medicine Finland FIMM, University of Helsinki, Helsinki 00290, Finland","institution_ids":["https://openalex.org/I4210133586","https://openalex.org/I133731052"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050670008","display_name":"Olli Kallioniemi","orcid":"https://orcid.org/0000-0002-3231-0332"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I2800139495","display_name":"Science for Life Laboratory","ror":"https://ror.org/04ev03g22","country_code":"SE","type":"facility","lineage":["https://openalex.org/I2800139495"]},{"id":"https://openalex.org/I4210133586","display_name":"Institute for Molecular Medicine Finland","ror":"https://ror.org/030sbze61","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]},{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]}],"countries":["FI","SE"],"is_corresponding":false,"raw_author_name":"Olli Kallioniemi","raw_affiliation_strings":["Department of Oncology and Pathology, Karolinska Institutet, Solna 17165, Sweden","Institute for Molecular Medicine Finland FIMM, University of Helsinki, Helsinki 00290, Finland","Science for Life Laboratory"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Oncology and Pathology, Karolinska Institutet, Solna 17165, Sweden","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"Institute for Molecular Medicine Finland FIMM, University of Helsinki, Helsinki 00290, Finland","institution_ids":["https://openalex.org/I4210133586","https://openalex.org/I133731052"]},{"raw_affiliation_string":"Science for Life Laboratory","institution_ids":["https://openalex.org/I2800139495"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016681267","display_name":"Tero Aittokallio","orcid":"https://orcid.org/0000-0002-0886-9769"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I4210133586","display_name":"Institute for Molecular Medicine Finland","ror":"https://ror.org/030sbze61","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Tero Aittokallio","raw_affiliation_strings":["Department of Mathematics and Statistics, University of Turku, Turku 20014, Finland","Institute for Molecular Medicine Finland FIMM, University of Helsinki, Helsinki 00290, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Statistics, University of Turku, Turku 20014, Finland","institution_ids":["https://openalex.org/I155660961"]},{"raw_affiliation_string":"Institute for Molecular Medicine Finland FIMM, University of Helsinki, Helsinki 00290, Finland","institution_ids":["https://openalex.org/I4210133586","https://openalex.org/I133731052"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018305257","display_name":"Samuel Kaski","orcid":"https://orcid.org/0000-0003-1925-9154"},"institutions":[{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Samuel Kaski","raw_affiliation_strings":["Helsinki Institute for Information Technology HIIT, Department of Computer Science, Aalto University, Espoo 02150, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Helsinki Institute for Information Technology HIIT, Department of Computer Science, Aalto University, Espoo 02150, Finland","institution_ids":["https://openalex.org/I32943570","https://openalex.org/I9927081"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5018305257","https://openalex.org/A5051333340"],"corresponding_institution_ids":["https://openalex.org/I32943570","https://openalex.org/I9927081"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":13.3385,"has_fulltext":false,"cited_by_count":125,"citation_normalized_percentile":{"value":0.98836731,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"32","issue":"17","first_page":"i455","last_page":"i463"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.6940000057220459,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.6940000057220459,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.13729999959468842,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11533","display_name":"Melanoma and MAPK Pathways","score":0.017000000923871994,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7133606672286987},{"id":"https://openalex.org/keywords/matrix-decomposition","display_name":"Matrix decomposition","score":0.6330651640892029},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5742247700691223},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.5475585460662842},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5125036239624023},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.4951378405094147},{"id":"https://openalex.org/keywords/kernel","display_name":"Kernel (algebra)","score":0.49342599511146545},{"id":"https://openalex.org/keywords/personalized-medicine","display_name":"Personalized medicine","score":0.48354458808898926},{"id":"https://openalex.org/keywords/drug-response","display_name":"Drug response","score":0.4786280691623688},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.4612599313259125},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.3167150616645813},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2037726640701294},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11332127451896667},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11105436086654663}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7133606672286987},{"id":"https://openalex.org/C42355184","wikidata":"https://www.wikidata.org/wiki/Q1361088","display_name":"Matrix decomposition","level":3,"score":0.6330651640892029},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5742247700691223},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.5475585460662842},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5125036239624023},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.4951378405094147},{"id":"https://openalex.org/C74193536","wikidata":"https://www.wikidata.org/wiki/Q574844","display_name":"Kernel (algebra)","level":2,"score":0.49342599511146545},{"id":"https://openalex.org/C32220436","wikidata":"https://www.wikidata.org/wiki/Q2072214","display_name":"Personalized medicine","level":2,"score":0.48354458808898926},{"id":"https://openalex.org/C2994119904","wikidata":"https://www.wikidata.org/wiki/Q1251001","display_name":"Drug response","level":3,"score":0.4786280691623688},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.4612599313259125},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.3167150616645813},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2037726640701294},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11332127451896667},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11105436086654663},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C158693339","wikidata":"https://www.wikidata.org/wiki/Q190524","display_name":"Eigenvalues and eigenvectors","level":2,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016503","descriptor_name":"Drug Delivery Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016503","descriptor_name":"Drug Delivery Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016503","descriptor_name":"Drug Delivery Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btw433","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw433","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/17/i455/24151036/btw433.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27587662","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27587662","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:arXiv.org:1606.03623","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1606.03623","pdf_url":"https://arxiv.org/pdf/1606.03623","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:aaltodoc.aalto.fi:123456789/107214","is_oa":true,"landing_page_url":"https://aaltodoc.aalto.fi/handle/123456789/107214","pdf_url":null,"source":{"id":"https://openalex.org/S4306401662","display_name":"Aaltodoc (Aalto University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I9927081","host_organization_name":"Aalto University","host_organization_lineage":["https://openalex.org/I9927081"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"publishedVersion"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/17/i455","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/17/i455","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btw433","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw433","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/17/i455/24151036/btw433.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.5899999737739563}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321108","display_name":"Academy of Finland","ror":"https://ror.org/05k73zm37"},{"id":"https://openalex.org/F4320323824","display_name":"Sy\u00f6p\u00e4j\u00e4rjest\u00f6t","ror":"https://ror.org/05pgg4z49"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2432718434.pdf","grobid_xml":"https://content.openalex.org/works/W2432718434.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W19078547","https://openalex.org/W1749623888","https://openalex.org/W1928552520","https://openalex.org/W1998163119","https://openalex.org/W2002783575","https://openalex.org/W2004638738","https://openalex.org/W2010457001","https://openalex.org/W2014784791","https://openalex.org/W2032245355","https://openalex.org/W2040600592","https://openalex.org/W2043398720","https://openalex.org/W2047708582","https://openalex.org/W2050712818","https://openalex.org/W2063280109","https://openalex.org/W2097360283","https://openalex.org/W2099862356","https://openalex.org/W2104709519","https://openalex.org/W2105437003","https://openalex.org/W2108068107","https://openalex.org/W2108933868","https://openalex.org/W2109743529","https://openalex.org/W2122825543","https://openalex.org/W2125789330","https://openalex.org/W2129860849","https://openalex.org/W2135007932","https://openalex.org/W2137084389","https://openalex.org/W2147088528","https://openalex.org/W2149775989","https://openalex.org/W2152883907","https://openalex.org/W2162888803","https://openalex.org/W2197241765","https://openalex.org/W2403959208","https://openalex.org/W2481151430","https://openalex.org/W3104240813","https://openalex.org/W4294541781"],"related_works":["https://openalex.org/W1508732282","https://openalex.org/W2159063798","https://openalex.org/W2068142083","https://openalex.org/W3154648057","https://openalex.org/W2758791195","https://openalex.org/W2999563835","https://openalex.org/W2609331662","https://openalex.org/W2353292232","https://openalex.org/W3193181239","https://openalex.org/W308224848"],"abstract_inverted_index":{"MOTIVATION:":[0],"A":[1],"key":[2],"goal":[3],"of":[4,17,53,92,153,196],"computational":[5],"personalized":[6],"medicine":[7],"is":[8,43,67,246],"to":[9,19,141,204],"systematically":[10],"utilize":[11],"genomic":[12],"and":[13,50,79,137,234],"other":[14],"molecular":[15,49],"features":[16],"samples":[18],"predict":[20,80],"drug":[21,81,103,144,158,215],"responses":[22,159],"for":[23,32,35,39,73,101,213,230],"a":[24,57,89,135,170],"previously":[25],"unseen":[26],"sample.":[27],"Such":[28],"predictions":[29,179],"are":[30,258],"valuable":[31,45],"developing":[33],"hypotheses":[34],"selecting":[36],"therapies":[37],"tailored":[38],"individual":[40],"patients.":[41],"This":[42],"especially":[44],"in":[46,134,160],"oncology,":[47],"where":[48],"genetic":[51],"heterogeneity":[52],"the":[54,61,64,71,107,112,130,143,151,154,193,197,211,227,231,244],"cells":[55],"has":[56],"major":[58],"impact":[59],"on":[60,156,169],"response.":[62],"However,":[63],"prediction":[65],"task":[66],"extremely":[68],"challenging,":[69],"raising":[70],"need":[72],"methods":[74],"that":[75,96,220],"can":[76,223],"effectively":[77],"model":[78,178,229],"responses.":[82,104],"RESULTS:":[83],"In":[84,125,173],"this":[85],"study,":[86],"we":[87,110,175],"propose":[88],"novel":[90,136],"formulation":[91],"multi-task":[93],"matrix":[94,116],"factorization":[95,117],"allows":[97],"selective":[98],"data":[99,257],"integration":[100],"predicting":[102,157],"To":[105],"solve":[106],"modeling":[108],"task,":[109],"extend":[111],"state-of-the-art":[113],"kernelized":[114],"Bayesian":[115],"(KBMF)":[118],"method":[119,148,199,245],"with":[120,180],"component-wise":[121],"multiple":[122],"kernel":[123],"learning.":[124],"addition,":[126,174],"our":[127,177],"approach":[128],"exploits":[129],"known":[131],"pathway":[132],"information":[133],"biologically":[138],"meaningful":[139],"fashion":[140],"learn":[142],"response":[145,207],"associations.":[146],"Our":[147],"quantitatively":[149],"outperforms":[150],"state":[152],"art":[155],"two":[161],"publicly":[162],"available":[163,247,259],"cancer":[164,186],"datasets":[165],"as":[166,168],"well":[167],"synthetic":[171],"dataset.":[172],"validated":[176],"lab":[181],"experiments":[182],"using":[183],"an":[184],"in-house":[185],"cell":[187],"line":[188],"panel.":[189],"We":[190,218],"finally":[191],"show":[192],"practical":[194],"applicability":[195],"proposed":[198,228],"by":[200,226],"utilizing":[201],"prior":[202],"knowledge":[203],"infer":[205],"pathway-drug":[206],"associations,":[208],"opening":[209],"up":[210],"opportunity":[212],"elucidating":[214],"action":[216],"mechanisms.":[217],"demonstrate":[219],"pathway-response":[221],"associations":[222],"be":[224],"learned":[225],"well-known":[232],"EGFR":[233],"MEK":[235],"inhibitors.":[236],"AVAILABILITY":[237],"AND":[238],"IMPLEMENTATION:":[239],"The":[240],"source":[241],"code":[242],"implementing":[243],"at":[248,260],"http://research.cs.aalto.fi/pml/software/cwkbmf/":[249],"CONTACTS:":[250],"muhammad.ammad-ud-din@aalto.fi":[251],"or":[252],"samuel.kaski@aalto.fi":[253],"SUPPLEMENTARY":[254],"INFORMATION:":[255],"Supplementary":[256],"Bioinformatics":[261],"online.":[262]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":17},{"year":2021,"cited_by_count":22},{"year":2020,"cited_by_count":20},{"year":2019,"cited_by_count":18},{"year":2018,"cited_by_count":10},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":2}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
