{"id":"https://openalex.org/W2512518468","doi":"https://doi.org/10.1093/bioinformatics/btw428","title":"XGSA: A statistical method for cross-species gene set analysis","display_name":"XGSA: A statistical method for cross-species gene set analysis","publication_year":2016,"publication_date":"2016-08-29","ids":{"openalex":"https://openalex.org/W2512518468","doi":"https://doi.org/10.1093/bioinformatics/btw428","mag":"2512518468","pmid":"https://pubmed.ncbi.nlm.nih.gov/27587682"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btw428","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw428","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/17/i620/24150969/btw428.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/17/i620/24150969/btw428.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080177886","display_name":"Djordje Djordjevic","orcid":"https://orcid.org/0000-0003-3669-6292"},"institutions":[{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]},{"id":"https://openalex.org/I4210123488","display_name":"St Vincent's Clinic","ror":"https://ror.org/02rthxz10","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I4210123488"]},{"id":"https://openalex.org/I19514445","display_name":"Victor Chang Cardiac Research Institute","ror":"https://ror.org/03trvqr13","country_code":"AU","type":"funder","lineage":["https://openalex.org/I19514445"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Djordje Djordjevic","raw_affiliation_strings":["St Vincent\u2019s Clinical School, University of New South Wales Australia, Darlinghurst, NSW 2010, Australia","Victor Chang Cardiac Research Institute, Darlinghurst, NSW 2010, Australia,","St Vincent's Clinical School, University of New South Wales Australia, Darlinghurst, NSW 2010, Australia"],"affiliations":[{"raw_affiliation_string":"St Vincent\u2019s Clinical School, University of New South Wales Australia, Darlinghurst, NSW 2010, Australia","institution_ids":["https://openalex.org/I4210123488","https://openalex.org/I31746571"]},{"raw_affiliation_string":"Victor Chang Cardiac Research Institute, Darlinghurst, NSW 2010, Australia,","institution_ids":["https://openalex.org/I19514445"]},{"raw_affiliation_string":"St Vincent's Clinical School, University of New South Wales Australia, Darlinghurst, NSW 2010, Australia","institution_ids":["https://openalex.org/I4210123488","https://openalex.org/I31746571"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053363250","display_name":"Kenro Kusumi","orcid":"https://orcid.org/0000-0002-1458-4540"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kenro Kusumi","raw_affiliation_strings":["School of Life Sciences, Arizona State University, Tempe, AZ 85287, USA"],"affiliations":[{"raw_affiliation_string":"School of Life Sciences, Arizona State University, Tempe, AZ 85287, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028008500","display_name":"Joshua W. K. Ho","orcid":"https://orcid.org/0000-0003-2331-7011"},"institutions":[{"id":"https://openalex.org/I19514445","display_name":"Victor Chang Cardiac Research Institute","ror":"https://ror.org/03trvqr13","country_code":"AU","type":"funder","lineage":["https://openalex.org/I19514445"]},{"id":"https://openalex.org/I4210123488","display_name":"St Vincent's Clinic","ror":"https://ror.org/02rthxz10","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I4210123488"]},{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Joshua W K Ho","raw_affiliation_strings":["St Vincent\u2019s Clinical School, University of New South Wales Australia, Darlinghurst, NSW 2010, Australia","Victor Chang Cardiac Research Institute, Darlinghurst, NSW 2010, Australia,","St Vincent's Clinical School, University of New South Wales Australia, Darlinghurst, NSW 2010, Australia"],"affiliations":[{"raw_affiliation_string":"St Vincent\u2019s Clinical School, University of New South Wales Australia, Darlinghurst, NSW 2010, Australia","institution_ids":["https://openalex.org/I4210123488","https://openalex.org/I31746571"]},{"raw_affiliation_string":"Victor Chang Cardiac Research Institute, Darlinghurst, NSW 2010, Australia,","institution_ids":["https://openalex.org/I19514445"]},{"raw_affiliation_string":"St Vincent's Clinical School, University of New South Wales Australia, Darlinghurst, NSW 2010, Australia","institution_ids":["https://openalex.org/I4210123488","https://openalex.org/I31746571"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5028008500","https://openalex.org/A5080177886"],"corresponding_institution_ids":["https://openalex.org/I19514445","https://openalex.org/I31746571","https://openalex.org/I4210123488"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.5652,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":{"value":0.83708408,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"32","issue":"17","first_page":"i620","last_page":"i628"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.991100013256073,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/homology","display_name":"Homology (biology)","score":0.7069380283355713},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6407464742660522},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5899011492729187},{"id":"https://openalex.org/keywords/gene-prediction","display_name":"Gene prediction","score":0.4809926748275757},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4766952693462372},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4656347334384918},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.39528030157089233},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.39000996947288513},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3699426054954529}],"concepts":[{"id":"https://openalex.org/C165525559","wikidata":"https://www.wikidata.org/wiki/Q224180","display_name":"Homology (biology)","level":3,"score":0.7069380283355713},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6407464742660522},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5899011492729187},{"id":"https://openalex.org/C105565629","wikidata":"https://www.wikidata.org/wiki/Q1248292","display_name":"Gene prediction","level":4,"score":0.4809926748275757},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4766952693462372},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4656347334384918},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.39528030157089233},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.39000996947288513},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3699426054954529},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012038","descriptor_name":"Regeneration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012038","descriptor_name":"Regeneration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012038","descriptor_name":"Regeneration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014714","descriptor_name":"Vertebrates","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014714","descriptor_name":"Vertebrates","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014714","descriptor_name":"Vertebrates","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btw428","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw428","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/17/i620/24150969/btw428.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27587682","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27587682","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/17/i620","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/17/i620","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btw428","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw428","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/17/i620/24150969/btw428.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.4099999964237213,"display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G5005896435","display_name":null,"funder_award_id":"Fellowship","funder_id":"https://openalex.org/F4320325396","funder_display_name":"NSW Ministry of Health"},{"id":"https://openalex.org/G5208258750","display_name":null,"funder_award_id":"1105271","funder_id":"https://openalex.org/F4320334705","funder_display_name":"National Health and Medical Research Council"},{"id":"https://openalex.org/G5474774966","display_name":null,"funder_award_id":"Health","funder_id":"https://openalex.org/F4320325396","funder_display_name":"NSW Ministry of Health"},{"id":"https://openalex.org/G7407982985","display_name":null,"funder_award_id":"Fellowship","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"}],"funders":[{"id":"https://openalex.org/F4320325396","display_name":"NSW Ministry of Health","ror":null},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334705","display_name":"National Health and Medical Research Council","ror":"https://ror.org/011kf5r70"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2512518468.pdf","grobid_xml":"https://content.openalex.org/works/W2512518468.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1512337699","https://openalex.org/W1967170554","https://openalex.org/W1973304336","https://openalex.org/W1974506021","https://openalex.org/W1980402014","https://openalex.org/W1997272729","https://openalex.org/W1998457769","https://openalex.org/W2027847170","https://openalex.org/W2030530458","https://openalex.org/W2030961917","https://openalex.org/W2033048030","https://openalex.org/W2036925986","https://openalex.org/W2042203018","https://openalex.org/W2044621567","https://openalex.org/W2045949302","https://openalex.org/W2064432569","https://openalex.org/W2066858330","https://openalex.org/W2075667512","https://openalex.org/W2081077466","https://openalex.org/W2083320231","https://openalex.org/W2098527037","https://openalex.org/W2106477781","https://openalex.org/W2120965285","https://openalex.org/W2124954099","https://openalex.org/W2130410032","https://openalex.org/W2133465414","https://openalex.org/W2143450509","https://openalex.org/W2152274187","https://openalex.org/W2162528766","https://openalex.org/W2165816035","https://openalex.org/W2169056504","https://openalex.org/W2201927605","https://openalex.org/W2223549218","https://openalex.org/W2340568413","https://openalex.org/W4252232449","https://openalex.org/W6684328029","https://openalex.org/W6703951544"],"related_works":["https://openalex.org/W2086525401","https://openalex.org/W2006735166","https://openalex.org/W2079327011","https://openalex.org/W2053325634","https://openalex.org/W3178279768","https://openalex.org/W193851735","https://openalex.org/W3094269189","https://openalex.org/W4321242349","https://openalex.org/W2112814626","https://openalex.org/W1590455801"],"abstract_inverted_index":{"The":[0],"R":[1],"source":[2],"code":[3],"for":[4],"XGSA":[5],"is":[6],"available":[7],"under":[8],"a":[9],"GNU":[10],"General":[11],"Public":[12],"License":[13],"at":[14],"http://github.com/VCCRI/XGSA":[15],"CONTACT:":[16],"jho@victorchang.edu.au.":[17]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":1}],"updated_date":"2026-03-18T14:38:29.013473","created_date":"2025-10-10T00:00:00"}
