{"id":"https://openalex.org/W2468220521","doi":"https://doi.org/10.1093/bioinformatics/btw414","title":"V<scp>isual</scp>G<scp>raph</scp>X: interactive graph visualization within Galaxy","display_name":"V<scp>isual</scp>G<scp>raph</scp>X: interactive graph visualization within Galaxy","publication_year":2016,"publication_date":"2016-07-13","ids":{"openalex":"https://openalex.org/W2468220521","doi":"https://doi.org/10.1093/bioinformatics/btw414","mag":"2468220521","pmid":"https://pubmed.ncbi.nlm.nih.gov/27412091"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btw414","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw414","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/22/3525/13200779/btw414.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/22/3525/13200779/btw414.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045313202","display_name":"Richard A Sch\u00e4fer","orcid":"https://orcid.org/0000-0001-9938-1920"},"institutions":[{"id":"https://openalex.org/I100066346","display_name":"University of Stuttgart","ror":"https://ror.org/04vnq7t77","country_code":"DE","type":"education","lineage":["https://openalex.org/I100066346"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Richard A. Sch\u00e4fer","raw_affiliation_strings":["Institute of Biochemical Engineering, Computational Biology, University of Stuttgart, Allmandring, 31, 70569 Stuttgart, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Biochemical Engineering, Computational Biology, University of Stuttgart, Allmandring, 31, 70569 Stuttgart, Germany","institution_ids":["https://openalex.org/I100066346"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044044433","display_name":"Bj\u00f6rn Vo\u00df","orcid":"https://orcid.org/0000-0002-5377-2800"},"institutions":[{"id":"https://openalex.org/I100066346","display_name":"University of Stuttgart","ror":"https://ror.org/04vnq7t77","country_code":"DE","type":"education","lineage":["https://openalex.org/I100066346"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Bj\u00f6rn Vo\u00df","raw_affiliation_strings":["Institute of Biochemical Engineering, Computational Biology, University of Stuttgart, Allmandring, 31, 70569 Stuttgart, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Biochemical Engineering, Computational Biology, University of Stuttgart, Allmandring, 31, 70569 Stuttgart, Germany","institution_ids":["https://openalex.org/I100066346"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5044044433"],"corresponding_institution_ids":["https://openalex.org/I100066346"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.05385403,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":93},"biblio":{"volume":"32","issue":"22","first_page":"3525","last_page":"3527"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9520000219345093,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9316999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.8898764848709106},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.8120405673980713},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7693355083465576},{"id":"https://openalex.org/keywords/graph-drawing","display_name":"Graph drawing","score":0.6358394026756287},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5982961654663086},{"id":"https://openalex.org/keywords/interactive-visualization","display_name":"Interactive visualization","score":0.5146485567092896},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4756816625595093},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.4651338458061218},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.4535542130470276},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.4142734408378601},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3778536021709442},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.3423415422439575},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.24561616778373718},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.23881760239601135},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1968839466571808},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.14007386565208435}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.8898764848709106},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.8120405673980713},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7693355083465576},{"id":"https://openalex.org/C112953755","wikidata":"https://www.wikidata.org/wiki/Q739462","display_name":"Graph drawing","level":3,"score":0.6358394026756287},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5982961654663086},{"id":"https://openalex.org/C64073096","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Interactive visualization","level":3,"score":0.5146485567092896},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4756816625595093},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.4651338458061218},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.4535542130470276},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.4142734408378601},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3778536021709442},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.3423415422439575},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.24561616778373718},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.23881760239601135},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1968839466571808},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.14007386565208435}],"mesh":[{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btw414","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw414","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/22/3525/13200779/btw414.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27412091","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27412091","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btw414","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw414","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/22/3525/13200779/btw414.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.550000011920929,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2468220521.pdf","grobid_xml":"https://content.openalex.org/works/W2468220521.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W36570781","https://openalex.org/W241117969","https://openalex.org/W1649645444","https://openalex.org/W1889881724","https://openalex.org/W2025007717","https://openalex.org/W2052320345","https://openalex.org/W2083786039","https://openalex.org/W2096826541","https://openalex.org/W2106474670","https://openalex.org/W2107249189","https://openalex.org/W2119828234","https://openalex.org/W2120890012","https://openalex.org/W2125910575","https://openalex.org/W2138199375","https://openalex.org/W2139939149","https://openalex.org/W2159675211","https://openalex.org/W2161645441","https://openalex.org/W2179127114","https://openalex.org/W4234608720"],"related_works":["https://openalex.org/W207660752","https://openalex.org/W3121352828","https://openalex.org/W2525274047","https://openalex.org/W2006240110","https://openalex.org/W2751110224","https://openalex.org/W4288663999","https://openalex.org/W3142151604","https://openalex.org/W2147036980","https://openalex.org/W2137394710","https://openalex.org/W1973315673"],"abstract_inverted_index":{"VisualGraphX":[0],"has":[1],"been":[2],"released":[3],"as":[4],"a":[5],"visualization":[6],"plugin":[7],"for":[8],"the":[9],"Galaxy":[10],"platform":[11],"under":[12],"AFL":[13],"3.0":[14],"and":[15,20],"is":[16],"available":[17],"with":[18],"instructions":[19],"application":[21],"data":[22],"at":[23],"http://gitlab.com/comptrans/VisualGraphX/":[24],"CONTACT:":[25],"bjoern.voss@ibvt.uni-stuttgart.de.":[26]},"counts_by_year":[{"year":2021,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2016-07-22T00:00:00"}
