{"id":"https://openalex.org/W2467628122","doi":"https://doi.org/10.1093/bioinformatics/btw413","title":"MorphoLibJ: integrated library and plugins for mathematical morphology with ImageJ","display_name":"MorphoLibJ: integrated library and plugins for mathematical morphology with ImageJ","publication_year":2016,"publication_date":"2016-07-13","ids":{"openalex":"https://openalex.org/W2467628122","doi":"https://doi.org/10.1093/bioinformatics/btw413","mag":"2467628122","pmid":"https://pubmed.ncbi.nlm.nih.gov/27412086"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btw413","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw413","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/22/3532/16920257/btw413.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/22/3532/16920257/btw413.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081216944","display_name":"David Legland","orcid":"https://orcid.org/0000-0001-7456-4632"},"institutions":[{"id":"https://openalex.org/I22248866","display_name":"AgroParisTech","ror":"https://ror.org/02kbmgc12","country_code":"FR","type":"education","lineage":["https://openalex.org/I22248866","https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210099947","display_name":"Biopolym\u00e8res Interactions Assemblages","ror":"https://ror.org/013vjwn12","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210099947","https://openalex.org/I4210108720"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210107368","display_name":"Institut Jean-Pierre Bourgin","ror":"https://ror.org/01wqd6v19","country_code":"FR","type":"facility","lineage":["https://openalex.org/I22248866","https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210088668","https://openalex.org/I4210107368"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210104197","display_name":"Food Process Engineering and Microbiology","ror":"https://ror.org/01ky8b097","country_code":"FR","type":"facility","lineage":["https://openalex.org/I22248866","https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210088668","https://openalex.org/I4210104197","https://openalex.org/I4210136388","https://openalex.org/I4210142426"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"David Legland","raw_affiliation_strings":["1UR1268 Biopolymers, Interactions and Assemblies, INRA, Nantes, France","2Institut Jean-Pierre Bourgin, INRA, AgroParisTech, CNRS, Universit\u00e9 Paris-Saclay, Versailles, Cedex, RD10, 78026, France","3UMR782 Food Process Engineering and Microbiology, INRA, AgroParisTech, Thiverval-Grignon, France"],"affiliations":[{"raw_affiliation_string":"1UR1268 Biopolymers, Interactions and Assemblies, INRA, Nantes, France","institution_ids":["https://openalex.org/I4210099947"]},{"raw_affiliation_string":"2Institut Jean-Pierre Bourgin, INRA, AgroParisTech, CNRS, Universit\u00e9 Paris-Saclay, Versailles, Cedex, RD10, 78026, France","institution_ids":["https://openalex.org/I4210107368","https://openalex.org/I277688954","https://openalex.org/I1294671590","https://openalex.org/I22248866"]},{"raw_affiliation_string":"3UMR782 Food Process Engineering and Microbiology, INRA, AgroParisTech, Thiverval-Grignon, France","institution_ids":["https://openalex.org/I22248866","https://openalex.org/I4210104197"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021284069","display_name":"Ignacio Arganda\u2010Carreras","orcid":"https://orcid.org/0000-0003-0229-5722"},"institutions":[{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I169108374","display_name":"University of the Basque Country","ror":"https://ror.org/000xsnr85","country_code":"ES","type":"education","lineage":["https://openalex.org/I169108374"]},{"id":"https://openalex.org/I110594554","display_name":"Ikerbasque","ror":"https://ror.org/01cc3fy72","country_code":"ES","type":"other","lineage":["https://openalex.org/I110594554"]},{"id":"https://openalex.org/I22248866","display_name":"AgroParisTech","ror":"https://ror.org/02kbmgc12","country_code":"FR","type":"education","lineage":["https://openalex.org/I22248866","https://openalex.org/I277688954"]},{"id":"https://openalex.org/I47686490","display_name":"Donostia International Physics Center","ror":"https://ror.org/02e24yw40","country_code":"ES","type":"other","lineage":["https://openalex.org/I47686490"]},{"id":"https://openalex.org/I4210107368","display_name":"Institut Jean-Pierre Bourgin","ror":"https://ror.org/01wqd6v19","country_code":"FR","type":"facility","lineage":["https://openalex.org/I22248866","https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210088668","https://openalex.org/I4210107368"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["ES","FR"],"is_corresponding":false,"raw_author_name":"Ignacio Arganda-Carreras","raw_affiliation_strings":["2Institut Jean-Pierre Bourgin, INRA, AgroParisTech, CNRS, Universit\u00e9 Paris-Saclay, Versailles, Cedex, RD10, 78026, France","4Basque Foundation for Science, Ikerbasque, Bilbao, 48013, Spain","5Computer Science and Artificial Intelligence Department, Basque Country University (UPV/EHU), Donostia-San Sebastian, 20018, Spain","6Donostia International Physics Center (DIPC), Donostia-San Sebastian, 20018, Spain"],"affiliations":[{"raw_affiliation_string":"2Institut Jean-Pierre Bourgin, INRA, AgroParisTech, CNRS, Universit\u00e9 Paris-Saclay, Versailles, Cedex, RD10, 78026, France","institution_ids":["https://openalex.org/I4210107368","https://openalex.org/I277688954","https://openalex.org/I1294671590","https://openalex.org/I22248866"]},{"raw_affiliation_string":"4Basque Foundation for Science, Ikerbasque, Bilbao, 48013, Spain","institution_ids":["https://openalex.org/I110594554"]},{"raw_affiliation_string":"5Computer Science and Artificial Intelligence Department, Basque Country University (UPV/EHU), Donostia-San Sebastian, 20018, Spain","institution_ids":["https://openalex.org/I169108374"]},{"raw_affiliation_string":"6Donostia International Physics Center (DIPC), Donostia-San Sebastian, 20018, Spain","institution_ids":["https://openalex.org/I47686490"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082583818","display_name":"Philippe Andrey","orcid":"https://orcid.org/0000-0001-5932-6863"},"institutions":[{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I22248866","display_name":"AgroParisTech","ror":"https://ror.org/02kbmgc12","country_code":"FR","type":"education","lineage":["https://openalex.org/I22248866","https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210107368","display_name":"Institut Jean-Pierre Bourgin","ror":"https://ror.org/01wqd6v19","country_code":"FR","type":"facility","lineage":["https://openalex.org/I22248866","https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210088668","https://openalex.org/I4210107368"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Philippe Andrey","raw_affiliation_strings":["2Institut Jean-Pierre Bourgin, INRA, AgroParisTech, CNRS, Universit\u00e9 Paris-Saclay, Versailles, Cedex, RD10, 78026, France","7Sorbonne Universit\u00e9s, UPMC Univ Paris 06, UFR 927, Paris, France"],"affiliations":[{"raw_affiliation_string":"2Institut Jean-Pierre Bourgin, INRA, AgroParisTech, CNRS, Universit\u00e9 Paris-Saclay, Versailles, Cedex, RD10, 78026, France","institution_ids":["https://openalex.org/I4210107368","https://openalex.org/I277688954","https://openalex.org/I1294671590","https://openalex.org/I22248866"]},{"raw_affiliation_string":"7Sorbonne Universit\u00e9s, UPMC Univ Paris 06, UFR 927, Paris, France","institution_ids":["https://openalex.org/I39804081"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5081216944"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I22248866","https://openalex.org/I277688954","https://openalex.org/I4210099947","https://openalex.org/I4210104197","https://openalex.org/I4210107368"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":87.6652,"has_fulltext":true,"cited_by_count":1408,"citation_normalized_percentile":{"value":0.99939476,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"32","issue":"22","first_page":"3532","last_page":"3534"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9873999953269958,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9873999953269958,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10616","display_name":"Smart Agriculture and AI","score":0.9682999849319458,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9596999883651733,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.9580461978912354},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6905694603919983},{"id":"https://openalex.org/keywords/mathematical-morphology","display_name":"Mathematical morphology","score":0.594912588596344},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5762129426002502},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.5078302025794983},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.413869708776474},{"id":"https://openalex.org/keywords/image-processing","display_name":"Image processing","score":0.4092673659324646},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3556947112083435},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34768182039260864},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33037689328193665},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.22526979446411133},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1818193793296814}],"concepts":[{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.9580461978912354},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6905694603919983},{"id":"https://openalex.org/C185568154","wikidata":"https://www.wikidata.org/wiki/Q530242","display_name":"Mathematical morphology","level":4,"score":0.594912588596344},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5762129426002502},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.5078302025794983},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.413869708776474},{"id":"https://openalex.org/C9417928","wikidata":"https://www.wikidata.org/wiki/Q1070689","display_name":"Image processing","level":3,"score":0.4092673659324646},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3556947112083435},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34768182039260864},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33037689328193665},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.22526979446411133},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1818193793296814}],"mesh":[{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btw413","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw413","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/22/3532/16920257/btw413.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27412086","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27412086","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:HAL:hal-01438611v1","is_oa":false,"landing_page_url":"https://hal.science/hal-01438611","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2016, 32 (22), pp.3532-3534. &#x27E8;10.1093/bioinformatics/btw413&#x27E9;","raw_type":"Journal articles"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btw413","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw413","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/22/3532/16920257/btw413.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.4000000059604645}],"awards":[{"id":"https://openalex.org/G6851345361","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2467628122.pdf","grobid_xml":"https://content.openalex.org/works/W2467628122.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W1884875365","https://openalex.org/W1967770515","https://openalex.org/W2049440559","https://openalex.org/W2115403650","https://openalex.org/W2116529502","https://openalex.org/W2124260943","https://openalex.org/W2130623599","https://openalex.org/W2131162981","https://openalex.org/W2137737959","https://openalex.org/W2147728748","https://openalex.org/W2167279371","https://openalex.org/W2505399031","https://openalex.org/W4249564760","https://openalex.org/W4292003313"],"related_works":["https://openalex.org/W47352601","https://openalex.org/W2981957539","https://openalex.org/W4287378204","https://openalex.org/W2545422590","https://openalex.org/W4240705470","https://openalex.org/W2058740282","https://openalex.org/W2375111338","https://openalex.org/W2736583656","https://openalex.org/W2220864757","https://openalex.org/W2352304637"],"abstract_inverted_index":{"MorphoLibJ":[0],"is":[1],"freely":[2],"available":[3,12],"at":[4,13],"http://imagej.net/MorphoLibJ":[5],"CONTACT:":[6],"david.legland@nantes.inra.frSupplementary":[7],"information:":[8],"Supplementary":[9],"data":[10],"are":[11],"Bioinformatics":[14],"online.":[15]},"counts_by_year":[{"year":2026,"cited_by_count":56},{"year":2025,"cited_by_count":188},{"year":2024,"cited_by_count":224},{"year":2023,"cited_by_count":214},{"year":2022,"cited_by_count":217},{"year":2021,"cited_by_count":195},{"year":2020,"cited_by_count":139},{"year":2019,"cited_by_count":98},{"year":2018,"cited_by_count":47},{"year":2017,"cited_by_count":24},{"year":2016,"cited_by_count":4},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-18T07:56:08.524223","created_date":"2025-10-10T00:00:00"}
