{"id":"https://openalex.org/W2465946233","doi":"https://doi.org/10.1093/bioinformatics/btw393","title":"ConsPred: a rule-based (re-)annotation framework for prokaryotic genomes","display_name":"ConsPred: a rule-based (re-)annotation framework for prokaryotic genomes","publication_year":2016,"publication_date":"2016-07-04","ids":{"openalex":"https://openalex.org/W2465946233","doi":"https://doi.org/10.1093/bioinformatics/btw393","mag":"2465946233","pmid":"https://pubmed.ncbi.nlm.nih.gov/27378292"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btw393","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw393","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/21/3327/7889621/btw393.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/21/3327/7889621/btw393.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031870368","display_name":"Thomas Weinmaier","orcid":"https://orcid.org/0000-0002-9552-3220"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Thomas Weinmaier","raw_affiliation_strings":["1 Department of Microbiology and Ecosystem Science, University of Vienna, Vienna, Austria"],"affiliations":[{"raw_affiliation_string":"1 Department of Microbiology and Ecosystem Science, University of Vienna, Vienna, Austria","institution_ids":["https://openalex.org/I129774422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066509741","display_name":"Alexander Platzer","orcid":"https://orcid.org/0000-0002-2318-8806"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Alexander Platzer","raw_affiliation_strings":["1 Department of Microbiology and Ecosystem Science, University of Vienna, Vienna, Austria"],"affiliations":[{"raw_affiliation_string":"1 Department of Microbiology and Ecosystem Science, University of Vienna, Vienna, Austria","institution_ids":["https://openalex.org/I129774422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010430294","display_name":"J. Howard Frank","orcid":"https://orcid.org/0000-0001-6279-2363"},"institutions":[{"id":"https://openalex.org/I145872427","display_name":"Radboud University Nijmegen","ror":"https://ror.org/016xsfp80","country_code":"NL","type":"education","lineage":["https://openalex.org/I145872427"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Jeroen Frank","raw_affiliation_strings":["2 Department of Microbiology, Radboud University Nijmegen, Nijmegen, The Netherlands"],"affiliations":[{"raw_affiliation_string":"2 Department of Microbiology, Radboud University Nijmegen, Nijmegen, The Netherlands","institution_ids":["https://openalex.org/I145872427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000750463","display_name":"Hans-J\u00f6rg Hellinger","orcid":null},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Hans-J\u00f6rg Hellinger","raw_affiliation_strings":["1 Department of Microbiology and Ecosystem Science, University of Vienna, Vienna, Austria"],"affiliations":[{"raw_affiliation_string":"1 Department of Microbiology and Ecosystem Science, University of Vienna, Vienna, Austria","institution_ids":["https://openalex.org/I129774422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016531886","display_name":"Patrick Tischler","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Patrick Tischler","raw_affiliation_strings":["3 Department of Genome Oriented Bioinformatics, Technische Universit\u00e4t M\u00fcnchen, Freising, Germany"],"affiliations":[{"raw_affiliation_string":"3 Department of Genome Oriented Bioinformatics, Technische Universit\u00e4t M\u00fcnchen, Freising, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051653794","display_name":"Thomas Rattei","orcid":"https://orcid.org/0000-0002-0592-7791"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]},{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]}],"countries":["AT","DE"],"is_corresponding":true,"raw_author_name":"Thomas Rattei","raw_affiliation_strings":["1 Department of Microbiology and Ecosystem Science, University of Vienna, Vienna, Austria","3 Department of Genome Oriented Bioinformatics, Technische Universit\u00e4t M\u00fcnchen, Freising, Germany"],"affiliations":[{"raw_affiliation_string":"1 Department of Microbiology and Ecosystem Science, University of Vienna, Vienna, Austria","institution_ids":["https://openalex.org/I129774422"]},{"raw_affiliation_string":"3 Department of Genome Oriented Bioinformatics, Technische Universit\u00e4t M\u00fcnchen, Freising, Germany","institution_ids":["https://openalex.org/I62916508"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5051653794"],"corresponding_institution_ids":["https://openalex.org/I129774422","https://openalex.org/I62916508"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.6779,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.73547934,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"32","issue":"21","first_page":"3327","last_page":"3329"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9904000163078308,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/perl","display_name":"Perl","score":0.8762455582618713},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7937825918197632},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7660291194915771},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.5775749087333679},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5589155554771423},{"id":"https://openalex.org/keywords/gene-annotation","display_name":"Gene Annotation","score":0.5056531429290771},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.46892908215522766},{"id":"https://openalex.org/keywords/genome-project","display_name":"Genome project","score":0.4493733048439026},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4304755926132202},{"id":"https://openalex.org/keywords/gene-prediction","display_name":"Gene prediction","score":0.42815354466438293},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.4245792627334595},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4205935597419739},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4197571277618408},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.41546687483787537},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3516849875450134},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.24356141686439514},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1919453740119934},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.16494256258010864},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11247938871383667}],"concepts":[{"id":"https://openalex.org/C2777002779","wikidata":"https://www.wikidata.org/wiki/Q42478","display_name":"Perl","level":2,"score":0.8762455582618713},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7937825918197632},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7660291194915771},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.5775749087333679},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5589155554771423},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.5056531429290771},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.46892908215522766},{"id":"https://openalex.org/C89566754","wikidata":"https://www.wikidata.org/wiki/Q2273828","display_name":"Genome project","level":4,"score":0.4493733048439026},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4304755926132202},{"id":"https://openalex.org/C105565629","wikidata":"https://www.wikidata.org/wiki/Q1248292","display_name":"Gene prediction","level":4,"score":0.42815354466438293},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.4245792627334595},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4205935597419739},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4197571277618408},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.41546687483787537},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3516849875450134},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24356141686439514},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1919453740119934},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16494256258010864},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11247938871383667},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011387","descriptor_name":"Prokaryotic Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011387","descriptor_name":"Prokaryotic Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011387","descriptor_name":"Prokaryotic Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011387","descriptor_name":"Prokaryotic Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btw393","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw393","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/21/3327/7889621/btw393.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27378292","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27378292","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/21/3327","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/21/3327","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:ru:oai:repository.ubn.ru.nl:2066/163279","is_oa":false,"landing_page_url":"http://hdl.handle.net/2066/163279","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 32, 3327 - 3329","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btw393","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw393","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/21/3327/7889621/btw393.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5199999809265137,"display_name":"Peace, Justice and strong institutions","id":"https://metadata.un.org/sdg/16"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2465946233.pdf","grobid_xml":"https://content.openalex.org/works/W2465946233.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W1517724123","https://openalex.org/W1528357204","https://openalex.org/W1590141371","https://openalex.org/W1975260887","https://openalex.org/W1997272729","https://openalex.org/W2004548026","https://openalex.org/W2025020367","https://openalex.org/W2078361370","https://openalex.org/W2089859322","https://openalex.org/W2096093282","https://openalex.org/W2096525273","https://openalex.org/W2120172561","https://openalex.org/W2124931735","https://openalex.org/W2125591244","https://openalex.org/W2131848047","https://openalex.org/W2132674080","https://openalex.org/W2155605591","https://openalex.org/W2164461702","https://openalex.org/W2165770381","https://openalex.org/W2739999456","https://openalex.org/W4237629094","https://openalex.org/W4248288579"],"related_works":["https://openalex.org/W2980998232","https://openalex.org/W4388524370","https://openalex.org/W2101269698","https://openalex.org/W2294108133","https://openalex.org/W2078942911","https://openalex.org/W2059565715","https://openalex.org/W4231584750","https://openalex.org/W2955310315","https://openalex.org/W2279845149","https://openalex.org/W3031567038"],"abstract_inverted_index":{"thomas.rattei@univie.ac.atSupplementary":[0],"information:":[1],"Supplementary":[2],"data":[3],"are":[4],"available":[5],"at":[6],"Bioinformatics":[7],"online.":[8]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2015,"cited_by_count":1}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}