{"id":"https://openalex.org/W2467097626","doi":"https://doi.org/10.1093/bioinformatics/btw384","title":"SERAPHIM: studying environmental rasters and phylogenetically informed movements","display_name":"SERAPHIM: studying environmental rasters and phylogenetically informed movements","publication_year":2016,"publication_date":"2016-06-22","ids":{"openalex":"https://openalex.org/W2467097626","doi":"https://doi.org/10.1093/bioinformatics/btw384","mag":"2467097626","pmid":"https://pubmed.ncbi.nlm.nih.gov/27334476"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btw384","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw384","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/20/3204/25040508/btw384.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/20/3204/25040508/btw384.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066369383","display_name":"Simon Dellicour","orcid":"https://orcid.org/0000-0001-9558-1052"},"institutions":[{"id":"https://openalex.org/I24156275","display_name":"Rega Institute for Medical Research","ror":"https://ror.org/03w5j8p12","country_code":"BE","type":"facility","lineage":["https://openalex.org/I24156275"]},{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Simon Dellicour","raw_affiliation_strings":["1 Department of Microbiology and Immunology, Rega Institute for Medical Research, Clinical and Epidemiological Virology, KU Leuven\u2014University of Leuven, Minderbroedersstaat 10, Leuven 3000, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Microbiology and Immunology, Rega Institute for Medical Research, Clinical and Epidemiological Virology, KU Leuven\u2014University of Leuven, Minderbroedersstaat 10, Leuven 3000, Belgium","institution_ids":["https://openalex.org/I24156275","https://openalex.org/I99464096"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002919205","display_name":"Rebecca Rose","orcid":"https://orcid.org/0000-0002-7711-2209"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rebecca Rose","raw_affiliation_strings":["2 BioInfoExperts LLC, Norfolk, Virginia, USA, 23518"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2 BioInfoExperts LLC, Norfolk, Virginia, USA, 23518","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075502162","display_name":"Nuno R. Faria","orcid":null},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nuno R. Faria","raw_affiliation_strings":["3 Department of Zoology, University of Oxford, Oxford OX1 3PS, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"3 Department of Zoology, University of Oxford, Oxford OX1 3PS, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039280845","display_name":"Philippe Lemey","orcid":"https://orcid.org/0000-0003-2826-5353"},"institutions":[{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]},{"id":"https://openalex.org/I24156275","display_name":"Rega Institute for Medical Research","ror":"https://ror.org/03w5j8p12","country_code":"BE","type":"facility","lineage":["https://openalex.org/I24156275"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Philippe Lemey","raw_affiliation_strings":["1 Department of Microbiology and Immunology, Rega Institute for Medical Research, Clinical and Epidemiological Virology, KU Leuven\u2014University of Leuven, Minderbroedersstaat 10, Leuven 3000, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Microbiology and Immunology, Rega Institute for Medical Research, Clinical and Epidemiological Virology, KU Leuven\u2014University of Leuven, Minderbroedersstaat 10, Leuven 3000, Belgium","institution_ids":["https://openalex.org/I24156275","https://openalex.org/I99464096"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061658598","display_name":"Oliver G. Pybus","orcid":"https://orcid.org/0000-0002-8797-2667"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Oliver G. Pybus","raw_affiliation_strings":["3 Department of Zoology, University of Oxford, Oxford OX1 3PS, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"3 Department of Zoology, University of Oxford, Oxford OX1 3PS, UK","institution_ids":["https://openalex.org/I40120149"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5061658598","https://openalex.org/A5066369383"],"corresponding_institution_ids":["https://openalex.org/I24156275","https://openalex.org/I40120149","https://openalex.org/I99464096"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":17.2912,"has_fulltext":true,"cited_by_count":196,"citation_normalized_percentile":{"value":0.98925791,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"32","issue":"20","first_page":"3204","last_page":"3206"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11354","display_name":"Evolution and Paleontology Studies","score":0.3610000014305115,"subfield":{"id":"https://openalex.org/subfields/1911","display_name":"Paleontology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11354","display_name":"Evolution and Paleontology Studies","score":0.3610000014305115,"subfield":{"id":"https://openalex.org/subfields/1911","display_name":"Paleontology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.29789999127388,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.07450000196695328,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/raster-graphics","display_name":"Raster graphics","score":0.6598671674728394},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6346384286880493},{"id":"https://openalex.org/keywords/biological-dispersal","display_name":"Biological dispersal","score":0.6197187900543213},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.6134511828422546},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.48850834369659424},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.47635364532470703},{"id":"https://openalex.org/keywords/spatial-analysis","display_name":"Spatial analysis","score":0.45161890983581543},{"id":"https://openalex.org/keywords/variable","display_name":"Variable (mathematics)","score":0.4334673285484314},{"id":"https://openalex.org/keywords/environmental-data","display_name":"Environmental data","score":0.4171745777130127},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.34202104806900024},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3213025629520416},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.2798348665237427},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.2631205916404724},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.20744353532791138},{"id":"https://openalex.org/keywords/paleontology","display_name":"Paleontology","score":0.09489431977272034},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08910229802131653},{"id":"https://openalex.org/keywords/demography","display_name":"Demography","score":0.08848771452903748}],"concepts":[{"id":"https://openalex.org/C181844469","wikidata":"https://www.wikidata.org/wiki/Q182270","display_name":"Raster graphics","level":2,"score":0.6598671674728394},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6346384286880493},{"id":"https://openalex.org/C47559259","wikidata":"https://www.wikidata.org/wiki/Q778143","display_name":"Biological dispersal","level":3,"score":0.6197187900543213},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.6134511828422546},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.48850834369659424},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.47635364532470703},{"id":"https://openalex.org/C159620131","wikidata":"https://www.wikidata.org/wiki/Q1938983","display_name":"Spatial analysis","level":2,"score":0.45161890983581543},{"id":"https://openalex.org/C182365436","wikidata":"https://www.wikidata.org/wiki/Q50701","display_name":"Variable (mathematics)","level":2,"score":0.4334673285484314},{"id":"https://openalex.org/C2776356880","wikidata":"https://www.wikidata.org/wiki/Q5381206","display_name":"Environmental data","level":2,"score":0.4171745777130127},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.34202104806900024},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3213025629520416},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.2798348665237427},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.2631205916404724},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.20744353532791138},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.09489431977272034},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08910229802131653},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.08848771452903748},{"id":"https://openalex.org/C62649853","wikidata":"https://www.wikidata.org/wiki/Q199687","display_name":"Remote sensing","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D004777","descriptor_name":"Environment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004777","descriptor_name":"Environment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004777","descriptor_name":"Environment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btw384","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw384","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/20/3204/25040508/btw384.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27334476","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27334476","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:dipot.ulb.ac.be:2013/277287","is_oa":true,"landing_page_url":"https://dipot.ulb.ac.be/dspace/bitstream/2013/277287/5/doi_260914.pdf","pdf_url":null,"source":{"id":"https://openalex.org/S4306401063","display_name":"D\u00e9p\u00f4t institutionnel de l'Universit\u00e9 libre de Bruxelles (Universit\u00e9 Libre de Bruxelles)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I132053463","host_organization_name":"Universit\u00e9 Libre de Bruxelles","host_organization_lineage":["https://openalex.org/I132053463"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 32 (20","raw_type":"info:ulb-repo/semantics/openurl/article"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/20/3204","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/20/3204","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:ora.ox.ac.uk:uuid:a597b090-7290-4763-8137-3fcf969e1406","is_oa":false,"landing_page_url":"https://ora.ox.ac.uk/objects/uuid:a597b090-7290-4763-8137-3fcf969e1406","pdf_url":null,"source":{"id":"https://openalex.org/S4306402636","display_name":"Oxford University Research Archive (ORA) (University of Oxford)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I40120149","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/I40120149"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Symplectic Elements at Oxford","raw_type":"Journal article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btw384","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw384","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/20/3204/25040508/btw384.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.5,"display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2467097626.pdf","grobid_xml":"https://content.openalex.org/works/W2467097626.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W1693165432","https://openalex.org/W1708072900","https://openalex.org/W2057434754","https://openalex.org/W2088267428","https://openalex.org/W2096714129","https://openalex.org/W2105811945","https://openalex.org/W2111513141","https://openalex.org/W2130362098","https://openalex.org/W2139166200","https://openalex.org/W2157389871","https://openalex.org/W2165812806","https://openalex.org/W2169528473","https://openalex.org/W2174335267","https://openalex.org/W2210095426","https://openalex.org/W2230749025","https://openalex.org/W2270825689","https://openalex.org/W2547574709","https://openalex.org/W2582743722","https://openalex.org/W6685894916"],"related_works":["https://openalex.org/W3193971388","https://openalex.org/W4388363453","https://openalex.org/W1974204627","https://openalex.org/W2001207513","https://openalex.org/W2835754784","https://openalex.org/W4377164308","https://openalex.org/W1998440774","https://openalex.org/W3112881275","https://openalex.org/W2896271600","https://openalex.org/W1972293988"],"abstract_inverted_index":{"SERAPHIM":[0,26,54,77,127,175],"(\"Studying":[1],"Environmental":[2],"Rasters":[3],"and":[4,36,47,103,110,140,189],"PHylogenetically":[5],"Informed":[6],"Movements\")":[7],"is":[8,177],"a":[9,124,190],"suite":[10],"of":[11,19,44,61,68,114,154],"computational":[12],"methods":[13],"developed":[14],"to":[15,40,48,57,89,131],"study":[16,58,70],"phylogenetic":[17,34],"reconstructions":[18],"spatial":[20,45,139],"movement":[21,101],"in":[22,32,151,163],"an":[23,74],"environmental":[24,63,75,79,92,105],"context.":[25],"extracts":[27],"the":[28,59,66,69,87,91,111,152],"spatio-temporal":[29],"information":[30,39],"contained":[31],"estimated":[33],"trees":[35],"uses":[37],"this":[38,196],"calculate":[41],"summary":[42],"statistics":[43],"spread":[46,67],"visualize":[49],"dispersal":[50],"history.":[51],"Most":[52],"importantly,":[53],"enables":[55],"users":[56],"impact":[60],"customized":[62],"variables":[64],"on":[65],"organism.":[71],"Specifically,":[72],"given":[73],"raster,":[76],"computes":[78],"\"weights\"":[80],"for":[81],"each":[82],"phylogeny":[83,133],"branch,":[84],"which":[85,90],"represent":[86],"degree":[88],"variable":[93],"impedes":[94],"(or":[95],"facilitates)":[96],"lineage":[97],"movement.":[98],"Correlations":[99],"between":[100],"duration":[102],"these":[104,115],"weights":[106],"are":[107,117,136,147,192,205],"then":[108],"assessed,":[109],"statistical":[112],"significances":[113],"correlations":[116],"evaluated":[118],"using":[119],"null":[120],"distributions":[121],"generated":[122],"by":[123],"randomization":[125],"procedure.":[126],"can":[128],"be":[129],"applied":[130],"any":[132],"whose":[134],"nodes":[135],"annotated":[137],"with":[138],"temporal":[141],"information.":[142],"At":[143],"present,":[144],"such":[145],"phylogenies":[146],"most":[148],"often":[149],"found":[150],"field":[153],"emerging":[155],"infectious":[156],"diseases,":[157],"but":[158],"will":[159],"become":[160],"increasingly":[161],"common":[162],"other":[164],"biological":[165],"disciplines":[166],"as":[167],"population":[168],"genomic":[169],"data":[170,204],"grows.":[171],"AVAILABILITY":[172],"AND":[173],"IMPLEMENTATION:":[174],"1.0":[176],"freely":[178],"available":[179,194,206],"from":[180,195],"http://evolve.zoo.ox.ac.uk/":[181],"R":[182],"package,":[183],"source":[184],"code,":[185],"example":[186],"files,":[187],"tutorials":[188],"manual":[191],"also":[193],"website.":[197],"CONTACT:":[198],"simon.dellicour@kuleuven.be":[199],"or":[200],"oliver.pybus@zoo.ox.ac.ukSupplementary":[201],"information:":[202],"Supplementary":[203],"at":[207],"Bioinformatics":[208],"online.":[209]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":30},{"year":2024,"cited_by_count":35},{"year":2023,"cited_by_count":25},{"year":2022,"cited_by_count":28},{"year":2021,"cited_by_count":30},{"year":2020,"cited_by_count":15},{"year":2019,"cited_by_count":13},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":1}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
