{"id":"https://openalex.org/W2415963323","doi":"https://doi.org/10.1093/bioinformatics/btw312","title":"MetaFast: fast reference-free graph-based comparison of shotgun metagenomic data","display_name":"MetaFast: fast reference-free graph-based comparison of shotgun metagenomic data","publication_year":2016,"publication_date":"2016-06-03","ids":{"openalex":"https://openalex.org/W2415963323","doi":"https://doi.org/10.1093/bioinformatics/btw312","mag":"2415963323","pmid":"https://pubmed.ncbi.nlm.nih.gov/27259541"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btw312","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw312","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047407238","display_name":"Vladimir Ulyantsev","orcid":"https://orcid.org/0000-0003-0802-830X"},"institutions":[{"id":"https://openalex.org/I173089394","display_name":"ITMO University","ror":"https://ror.org/04txgxn49","country_code":"RU","type":"education","lineage":["https://openalex.org/I173089394"]}],"countries":["RU"],"is_corresponding":true,"raw_author_name":"Vladimir I. Ulyantsev","raw_affiliation_strings":["1 ITMO University, Saint Petersburg, Russian Federation"],"affiliations":[{"raw_affiliation_string":"1 ITMO University, Saint Petersburg, Russian Federation","institution_ids":["https://openalex.org/I173089394"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067944582","display_name":"\u0421. \u0412. \u041a\u0430\u0437\u0430\u043a\u043e\u0432","orcid":null},"institutions":[{"id":"https://openalex.org/I173089394","display_name":"ITMO University","ror":"https://ror.org/04txgxn49","country_code":"RU","type":"education","lineage":["https://openalex.org/I173089394"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Sergey V. Kazakov","raw_affiliation_strings":["1 ITMO University, Saint Petersburg, Russian Federation"],"affiliations":[{"raw_affiliation_string":"1 ITMO University, Saint Petersburg, Russian Federation","institution_ids":["https://openalex.org/I173089394"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090753616","display_name":"Veronika Dubinkina","orcid":"https://orcid.org/0000-0002-4844-6795"},"institutions":[{"id":"https://openalex.org/I4210141537","display_name":"Research Institute of Physical Chemical Medicine","ror":"https://ror.org/03snjhe90","country_code":"RU","type":"facility","lineage":["https://openalex.org/I4210141537","https://openalex.org/I64264942"]},{"id":"https://openalex.org/I153845743","display_name":"Moscow Institute of Physics and Technology","ror":"https://ror.org/00v0z9322","country_code":"RU","type":"education","lineage":["https://openalex.org/I153845743"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Veronika B. Dubinkina","raw_affiliation_strings":["2 Federal Research and Clinical Centre of Physical-Chemical Medicine, Moscow, Russian Federation","3 Moscow Institute of Physics and Technology (State University), Dolgoprudny, Russian Federation"],"affiliations":[{"raw_affiliation_string":"2 Federal Research and Clinical Centre of Physical-Chemical Medicine, Moscow, Russian Federation","institution_ids":["https://openalex.org/I4210141537"]},{"raw_affiliation_string":"3 Moscow Institute of Physics and Technology (State University), Dolgoprudny, Russian Federation","institution_ids":["https://openalex.org/I153845743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000996948","display_name":"Alexander Tyakht","orcid":"https://orcid.org/0000-0002-7358-2537"},"institutions":[{"id":"https://openalex.org/I4210141537","display_name":"Research Institute of Physical Chemical Medicine","ror":"https://ror.org/03snjhe90","country_code":"RU","type":"facility","lineage":["https://openalex.org/I4210141537","https://openalex.org/I64264942"]},{"id":"https://openalex.org/I153845743","display_name":"Moscow Institute of Physics and Technology","ror":"https://ror.org/00v0z9322","country_code":"RU","type":"education","lineage":["https://openalex.org/I153845743"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Alexander V. Tyakht","raw_affiliation_strings":["2 Federal Research and Clinical Centre of Physical-Chemical Medicine, Moscow, Russian Federation","3 Moscow Institute of Physics and Technology (State University), Dolgoprudny, Russian Federation"],"affiliations":[{"raw_affiliation_string":"2 Federal Research and Clinical Centre of Physical-Chemical Medicine, Moscow, Russian Federation","institution_ids":["https://openalex.org/I4210141537"]},{"raw_affiliation_string":"3 Moscow Institute of Physics and Technology (State University), Dolgoprudny, Russian Federation","institution_ids":["https://openalex.org/I153845743"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5072402836","display_name":"Dmitry Alexeev","orcid":"https://orcid.org/0000-0003-0783-1176"},"institutions":[{"id":"https://openalex.org/I153845743","display_name":"Moscow Institute of Physics and Technology","ror":"https://ror.org/00v0z9322","country_code":"RU","type":"education","lineage":["https://openalex.org/I153845743"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Dmitry G. Alexeev","raw_affiliation_strings":["3 Moscow Institute of Physics and Technology (State University), Dolgoprudny, Russian Federation"],"affiliations":[{"raw_affiliation_string":"3 Moscow Institute of Physics and Technology (State University), Dolgoprudny, Russian Federation","institution_ids":["https://openalex.org/I153845743"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5047407238"],"corresponding_institution_ids":["https://openalex.org/I173089394"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":4.1773,"has_fulltext":false,"cited_by_count":51,"citation_normalized_percentile":{"value":0.94343088,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":100},"biblio":{"volume":"32","issue":"18","first_page":"2760","last_page":"2767"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.8616978526115417},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6946015357971191},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.6248165965080261},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5781098008155823},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4372898042201996},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4163435101509094},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37343770265579224},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2650102376937866},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.23669332265853882},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1328020691871643},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09667488932609558},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09460046887397766}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.8616978526115417},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6946015357971191},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.6248165965080261},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5781098008155823},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4372898042201996},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4163435101509094},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37343770265579224},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2650102376937866},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.23669332265853882},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1328020691871643},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09667488932609558},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09460046887397766},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btw312","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw312","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27259541","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27259541","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/18/2760","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/18/2760","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6700000166893005,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":49,"referenced_works":["https://openalex.org/W1539550196","https://openalex.org/W1568043102","https://openalex.org/W1635391495","https://openalex.org/W1703384511","https://openalex.org/W1749872317","https://openalex.org/W1878521557","https://openalex.org/W1916919897","https://openalex.org/W1932545619","https://openalex.org/W1954100204","https://openalex.org/W1966912927","https://openalex.org/W1979724564","https://openalex.org/W1997673861","https://openalex.org/W2001561488","https://openalex.org/W2003347102","https://openalex.org/W2010002522","https://openalex.org/W2013544175","https://openalex.org/W2030928347","https://openalex.org/W2035396875","https://openalex.org/W2041415907","https://openalex.org/W2048818637","https://openalex.org/W2071841602","https://openalex.org/W2073029054","https://openalex.org/W2085248024","https://openalex.org/W2094890728","https://openalex.org/W2101180430","https://openalex.org/W2109848222","https://openalex.org/W2112888758","https://openalex.org/W2113312463","https://openalex.org/W2113601822","https://openalex.org/W2113915152","https://openalex.org/W2120902911","https://openalex.org/W2125826054","https://openalex.org/W2126033564","https://openalex.org/W2128769815","https://openalex.org/W2145044321","https://openalex.org/W2150208009","https://openalex.org/W2150859566","https://openalex.org/W2155368965","https://openalex.org/W2159591897","https://openalex.org/W2159954944","https://openalex.org/W2160969485","https://openalex.org/W2165312548","https://openalex.org/W2168440186","https://openalex.org/W2171963266","https://openalex.org/W2190655222","https://openalex.org/W2194503930","https://openalex.org/W2230655163","https://openalex.org/W2230749025","https://openalex.org/W2254734290"],"related_works":["https://openalex.org/W638577851","https://openalex.org/W2968354375","https://openalex.org/W2359440920","https://openalex.org/W2889550857","https://openalex.org/W3013372948","https://openalex.org/W3135997498","https://openalex.org/W4242417330","https://openalex.org/W3198631238","https://openalex.org/W4388282505","https://openalex.org/W2968048207"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":4}],"updated_date":"2026-03-27T14:29:43.386196","created_date":"2025-10-10T00:00:00"}
