{"id":"https://openalex.org/W2357463082","doi":"https://doi.org/10.1093/bioinformatics/btw299","title":"Computational discovery and <i>in vivo</i> validation of <i>hnf4</i> as a regulatory gene in planarian regeneration","display_name":"Computational discovery and <i>in vivo</i> validation of <i>hnf4</i> as a regulatory gene in planarian regeneration","publication_year":2016,"publication_date":"2016-05-10","ids":{"openalex":"https://openalex.org/W2357463082","doi":"https://doi.org/10.1093/bioinformatics/btw299","mag":"2357463082","pmid":"https://pubmed.ncbi.nlm.nih.gov/27166245"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btw299","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw299","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/17/2681/7374214/btw299.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/17/2681/7374214/btw299.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021222550","display_name":"Daniel Lobo","orcid":"https://orcid.org/0000-0003-4666-6118"},"institutions":[{"id":"https://openalex.org/I79272384","display_name":"University of Maryland, Baltimore County","ror":"https://ror.org/02qskvh78","country_code":"US","type":"education","lineage":["https://openalex.org/I79272384"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel Lobo","raw_affiliation_strings":["1 Department of Biological Sciences, University of Maryland, Baltimore County, Baltimore, MD 21250, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Biological Sciences, University of Maryland, Baltimore County, Baltimore, MD 21250, USA","institution_ids":["https://openalex.org/I79272384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045840183","display_name":"Junji Morokuma","orcid":"https://orcid.org/0000-0003-1751-0472"},"institutions":[{"id":"https://openalex.org/I121934306","display_name":"Tufts University","ror":"https://ror.org/05wvpxv85","country_code":"US","type":"education","lineage":["https://openalex.org/I121934306"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Junji Morokuma","raw_affiliation_strings":["2 Center for Regenerative and Developmental Biology","3 Department of Biology, Tufts University, Medford, MA 02155, USA"],"affiliations":[{"raw_affiliation_string":"2 Center for Regenerative and Developmental Biology","institution_ids":[]},{"raw_affiliation_string":"3 Department of Biology, Tufts University, Medford, MA 02155, USA","institution_ids":["https://openalex.org/I121934306"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085228887","display_name":"Michael Levin","orcid":"https://orcid.org/0000-0001-7292-8084"},"institutions":[{"id":"https://openalex.org/I121934306","display_name":"Tufts University","ror":"https://ror.org/05wvpxv85","country_code":"US","type":"education","lineage":["https://openalex.org/I121934306"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Michael Levin","raw_affiliation_strings":["2 Center for Regenerative and Developmental Biology","3 Department of Biology, Tufts University, Medford, MA 02155, USA"],"affiliations":[{"raw_affiliation_string":"2 Center for Regenerative and Developmental Biology","institution_ids":[]},{"raw_affiliation_string":"3 Department of Biology, Tufts University, Medford, MA 02155, USA","institution_ids":["https://openalex.org/I121934306"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5085228887"],"corresponding_institution_ids":["https://openalex.org/I121934306"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.5006,"has_fulltext":false,"cited_by_count":21,"citation_normalized_percentile":{"value":0.82585406,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"32","issue":"17","first_page":"2681","last_page":"2685"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12789","display_name":"Planarian Biology and Electrostimulation","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12789","display_name":"Planarian Biology and Electrostimulation","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12213","display_name":"Marine Ecology and Invasive Species","score":0.9731000065803528,"subfield":{"id":"https://openalex.org/subfields/2306","display_name":"Global and Planetary Change"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12813","display_name":"Plant and Biological Electrophysiology Studies","score":0.9527000188827515,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/planarian","display_name":"Planarian","score":0.9735628366470337},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6817261576652527},{"id":"https://openalex.org/keywords/regeneration","display_name":"Regeneration (biology)","score":0.5802261233329773},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5311352610588074},{"id":"https://openalex.org/keywords/in-vivo","display_name":"In vivo","score":0.4625522494316101},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.44104307889938354},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.36858612298965454}],"concepts":[{"id":"https://openalex.org/C2775935104","wikidata":"https://www.wikidata.org/wiki/Q6502673","display_name":"Planarian","level":3,"score":0.9735628366470337},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6817261576652527},{"id":"https://openalex.org/C171056886","wikidata":"https://www.wikidata.org/wiki/Q193119","display_name":"Regeneration (biology)","level":2,"score":0.5802261233329773},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5311352610588074},{"id":"https://openalex.org/C207001950","wikidata":"https://www.wikidata.org/wiki/Q141124","display_name":"In vivo","level":2,"score":0.4625522494316101},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.44104307889938354},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.36858612298965454}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005809","descriptor_name":"Genes, Regulator","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005809","descriptor_name":"Genes, Regulator","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005809","descriptor_name":"Genes, Regulator","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010932","descriptor_name":"Planarians","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010932","descriptor_name":"Planarians","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010932","descriptor_name":"Planarians","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012038","descriptor_name":"Regeneration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012038","descriptor_name":"Regeneration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012038","descriptor_name":"Regeneration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D051557","descriptor_name":"Hepatocyte Nuclear Factor 4","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051557","descriptor_name":"Hepatocyte Nuclear Factor 4","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051557","descriptor_name":"Hepatocyte Nuclear Factor 4","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btw299","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw299","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/17/2681/7374214/btw299.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27166245","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27166245","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/17/2681","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/17/2681","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btw299","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw299","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/17/2681/7374214/btw299.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2357463082.pdf","grobid_xml":"https://content.openalex.org/works/W2357463082.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W607236675","https://openalex.org/W1979769287","https://openalex.org/W1991138583","https://openalex.org/W1992683617","https://openalex.org/W1998131012","https://openalex.org/W2007734760","https://openalex.org/W2010795839","https://openalex.org/W2029916705","https://openalex.org/W2039813668","https://openalex.org/W2044861333","https://openalex.org/W2045097086","https://openalex.org/W2051676319","https://openalex.org/W2055122486","https://openalex.org/W2066972948","https://openalex.org/W2082564851","https://openalex.org/W2091966685","https://openalex.org/W2096173332","https://openalex.org/W2110106797","https://openalex.org/W2111011458","https://openalex.org/W2111932463","https://openalex.org/W2112366395","https://openalex.org/W2125738657","https://openalex.org/W2129265801","https://openalex.org/W2136399909","https://openalex.org/W2136482324","https://openalex.org/W2138743768","https://openalex.org/W2146557306","https://openalex.org/W2155443781","https://openalex.org/W2160727944","https://openalex.org/W2166106382","https://openalex.org/W2339925307"],"related_works":["https://openalex.org/W4386595023","https://openalex.org/W4235970525","https://openalex.org/W2049201889","https://openalex.org/W3140506149","https://openalex.org/W2376134633","https://openalex.org/W4285012813","https://openalex.org/W2343860250","https://openalex.org/W2336394022","https://openalex.org/W2144375779","https://openalex.org/W1530415409"],"abstract_inverted_index":{"michael.levin@tufts.edu.":[0]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2016-06-24T00:00:00"}
