{"id":"https://openalex.org/W2428528690","doi":"https://doi.org/10.1093/bioinformatics/btw294","title":"DeepMeSH: deep semantic representation for improving large-scale MeSH indexing","display_name":"DeepMeSH: deep semantic representation for improving large-scale MeSH indexing","publication_year":2016,"publication_date":"2016-06-11","ids":{"openalex":"https://openalex.org/W2428528690","doi":"https://doi.org/10.1093/bioinformatics/btw294","mag":"2428528690","pmid":"https://pubmed.ncbi.nlm.nih.gov/27307646"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btw294","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw294","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/12/i70/17130750/btw294.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/12/i70/17130750/btw294.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102196120","display_name":"Shengwen Peng","orcid":null},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shengwen Peng","raw_affiliation_strings":["1 School of Computer Science and Shanghai Key Lab of Intelligent Information Processing, Fudan University, Shanghai 200433, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Computer Science and Shanghai Key Lab of Intelligent Information Processing, Fudan University, Shanghai 200433, China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015677036","display_name":"Ronghui You","orcid":"https://orcid.org/0000-0002-7608-4867"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ronghui You","raw_affiliation_strings":["1 School of Computer Science and Shanghai Key Lab of Intelligent Information Processing, Fudan University, Shanghai 200433, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Computer Science and Shanghai Key Lab of Intelligent Information Processing, Fudan University, Shanghai 200433, China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085094109","display_name":"Hongning Wang","orcid":"https://orcid.org/0000-0002-6524-9195"},"institutions":[{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hongning Wang","raw_affiliation_strings":["2 Department of Computer Science, University of Virginia, Charlottesville 22904-4740, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2 Department of Computer Science, University of Virginia, Charlottesville 22904-4740, USA","institution_ids":["https://openalex.org/I51556381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028518494","display_name":"ChengXiang Zhai","orcid":"https://orcid.org/0000-0002-6434-3702"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chengxiang Zhai","raw_affiliation_strings":["3 Department of Computer Science, University of Illinois at Urbana-Champaign, IL 61801, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"3 Department of Computer Science, University of Illinois at Urbana-Champaign, IL 61801, USA","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059001924","display_name":"Hiroshi Mamitsuka","orcid":"https://orcid.org/0000-0002-6607-5617"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI","JP"],"is_corresponding":false,"raw_author_name":"Hiroshi Mamitsuka","raw_affiliation_strings":["4 Bioinformatics Center, Kyoto University, Institute for Chemical Research, Uji 611-0011, Japan","5 Department of Computer Science, Aalto University, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"4 Bioinformatics Center, Kyoto University, Institute for Chemical Research, Uji 611-0011, Japan","institution_ids":["https://openalex.org/I22299242"]},{"raw_affiliation_string":"5 Department of Computer Science, Aalto University, Finland","institution_ids":["https://openalex.org/I9927081"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045866167","display_name":"Shanfeng Zhu","orcid":"https://orcid.org/0000-0002-6067-5312"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Shanfeng Zhu","raw_affiliation_strings":["1 School of Computer Science and Shanghai Key Lab of Intelligent Information Processing, Fudan University, Shanghai 200433, China","6 Centre for Computational System Biology, Fudan University, Shanghai 200433, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Computer Science and Shanghai Key Lab of Intelligent Information Processing, Fudan University, Shanghai 200433, China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"6 Centre for Computational System Biology, Fudan University, Shanghai 200433, China","institution_ids":["https://openalex.org/I24943067"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5045866167"],"corresponding_institution_ids":["https://openalex.org/I24943067"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":8.0155,"has_fulltext":true,"cited_by_count":131,"citation_normalized_percentile":{"value":0.98005486,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"32","issue":"12","first_page":"i70","last_page":"i79"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9398999810218811,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9398999810218811,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.020400000736117363,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.006000000052154064,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8103423118591309},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.7350767254829407},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6781752109527588},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5035406947135925},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.49750784039497375},{"id":"https://openalex.org/keywords/citation","display_name":"Citation","score":0.4655386209487915},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.22963237762451172}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8103423118591309},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.7350767254829407},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6781752109527588},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5035406947135925},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.49750784039497375},{"id":"https://openalex.org/C2778805511","wikidata":"https://www.wikidata.org/wiki/Q1713","display_name":"Citation","level":2,"score":0.4655386209487915},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.22963237762451172},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009317","descriptor_name":"National Library of Medicine (U.S.)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009317","descriptor_name":"National Library of Medicine (U.S.)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009317","descriptor_name":"National Library of Medicine (U.S.)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009317","descriptor_name":"National Library of Medicine (U.S.)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/btw294","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw294","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/12/i70/17130750/btw294.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27307646","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27307646","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:irdb.nii.ac.jp:01221:0000174238","is_oa":true,"landing_page_url":"http://hdl.handle.net/2433/218457","pdf_url":null,"source":{"id":"https://openalex.org/S7407056385","display_name":"Institutional Repositories DataBase (IRDB)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I184597095","host_organization_name":"National Institute of Informatics","host_organization_lineage":["https://openalex.org/I184597095"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal article"},{"id":"pmh:oai:aaltodoc.aalto.fi:123456789/22952","is_oa":true,"landing_page_url":"https://research.aalto.fi/en/publications/cd1de4e7-fb1f-41e1-aaed-838a21396f46","pdf_url":null,"source":{"id":"https://openalex.org/S4306401662","display_name":"Aaltodoc (Aalto University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I9927081","host_organization_name":"Aalto University","host_organization_lineage":["https://openalex.org/I9927081"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/12/i70","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/12/i70","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:4908368","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4908368","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btw294","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw294","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/12/i70/17130750/btw294.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4300000071525574,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G1767995656","display_name":"\u5927\u89c4\u6a21\u751f\u7269\u533b\u5b66\u6587\u732e\u533b\u5b66\u4e3b\u9898\u8bcd\u7684\u9ad8\u7cbe\u5ea6\u81ea\u52a8\u6807\u6ce8\u7814\u7a76","funder_award_id":"61572139","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3339524276","display_name":null,"funder_award_id":"1U54GM114838","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4219326155","display_name":null,"funder_award_id":"U54 GM114838","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G5245339017","display_name":"CAREER: Human-Centric Knowledge Discovery and Decision Optimization","funder_award_id":"1553568","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5997710061","display_name":"Estimating the factor structure in multiple matrices","funder_award_id":"16H02868","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G7347817016","display_name":null,"funder_award_id":"16H02868","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"},{"id":"https://openalex.org/G7441103298","display_name":null,"funder_award_id":"IIS-1553568","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320320912","display_name":"Ministry of Education, Culture, Sports, Science and Technology","ror":"https://ror.org/048rj2z13"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321855","display_name":"Tekes","ror":"https://ror.org/02ag8cq23"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2428528690.pdf","grobid_xml":"https://content.openalex.org/works/W2428528690.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W74342042","https://openalex.org/W100623710","https://openalex.org/W174753650","https://openalex.org/W1889268436","https://openalex.org/W1981208470","https://openalex.org/W1984052055","https://openalex.org/W1996211074","https://openalex.org/W2025103722","https://openalex.org/W2041005615","https://openalex.org/W2044986849","https://openalex.org/W2057803903","https://openalex.org/W2058907739","https://openalex.org/W2061172803","https://openalex.org/W2088339844","https://openalex.org/W2096525273","https://openalex.org/W2101478855","https://openalex.org/W2114315281","https://openalex.org/W2115024484","https://openalex.org/W2115584760","https://openalex.org/W2118585731","https://openalex.org/W2132220874","https://openalex.org/W2142955026","https://openalex.org/W2152143870","https://openalex.org/W2153579005","https://openalex.org/W2153635508","https://openalex.org/W2157870551","https://openalex.org/W2160171761","https://openalex.org/W2168022112","https://openalex.org/W2182889308","https://openalex.org/W2187074748","https://openalex.org/W2250639155","https://openalex.org/W2251939518","https://openalex.org/W2398645150","https://openalex.org/W2400171164","https://openalex.org/W2403393286","https://openalex.org/W2403452307","https://openalex.org/W2949547296","https://openalex.org/W4237629094","https://openalex.org/W4285719527","https://openalex.org/W6604112372","https://openalex.org/W6607080078","https://openalex.org/W6677656871","https://openalex.org/W6683709678"],"related_works":["https://openalex.org/W3024364549","https://openalex.org/W4206019083","https://openalex.org/W1976265003","https://openalex.org/W2054476758","https://openalex.org/W2370378377","https://openalex.org/W2048865712","https://openalex.org/W4210535024","https://openalex.org/W4237510188","https://openalex.org/W2188505374","https://openalex.org/W1558342070"],"abstract_inverted_index":{"MOTIVATION:":[0],"Medical":[1,52],"Subject":[2],"Headings":[3],"(MeSH)":[4],"indexing,":[5],"which":[6,71,116,139],"is":[7,18,107,128,184],"to":[8,16,134],"assign":[9],"a":[10,110,154],"set":[11],"of":[12,59,137,143,157,163,170],"MeSH":[13,32,42,90,101,125],"main":[14],"headings":[15],"citations,":[17],"crucial":[19],"for":[20,88,172],"many":[21],"important":[22],"tasks":[23],"in":[24,97],"biomedical":[25],"text":[26,68],"mining":[27],"and":[28,41,61,75,100,120,165],"information":[29,77,87],"retrieval.":[30],"Large-scale":[31],"indexing":[33],"has":[34],"two":[35,95],"challenging":[36],"aspects:":[37],"the":[38,45,62,94,132,147],"citation":[39,46,99,104],"side":[40,105,126],"side.":[43],"For":[44],"side,":[47],"all":[48],"existing":[49],"methods,":[50],"including":[51],"Text":[53],"Indexer":[54],"(MTI)":[55],"by":[56,69,109,130],"National":[57],"Library":[58],"Medicine":[60],"state-of-the-art":[63],"method,":[64],"MeSHLabeler,":[65,138],"deal":[66],"with":[67,176],"bag-of-words,":[70],"cannot":[72],"capture":[73],"semantic":[74,86,113,122,149],"context-dependent":[76],"well.":[78],"METHODS:":[79],"We":[80],"propose":[81],"DeepMeSH":[82,152],"that":[83],"incorporates":[84],"deep":[85,112],"large-scale":[89],"indexing.":[91],"It":[92],"addresses":[93],"challenges":[96],"both":[98,118],"sides.":[102],"The":[103,124,182],"challenge":[106,127,174],"solved":[108,129],"new":[111,148],"representation,":[114],"D2V-TFIDF,":[115],"concatenates":[117],"sparse":[119],"dense":[121],"representations.":[123],"using":[131],"'learning":[133],"rank'":[135],"framework":[136],"integrates":[140],"various":[141],"types":[142],"evidence":[144],"generated":[145],"from":[146],"representation.":[150],"RESULTS:":[151],"achieved":[153],"Micro":[155],"F-measure":[156],"0.6323,":[158],"2%":[159],"higher":[160,167],"than":[161,168],"0.6218":[162],"MeSHLabeler":[164],"12%":[166],"0.5637":[169],"MTI,":[171],"BioASQ3":[173],"data":[175,193],"6000":[177],"citations.":[178],"AVAILABILITY":[179],"AND":[180],"IMPLEMENTATION:":[181],"software":[183],"available":[185,195],"upon":[186],"request.":[187],"CONTACT:":[188],"zhusf@fudan.edu.cn":[189],"SUPPLEMENTARY":[190],"INFORMATION:":[191],"Supplementary":[192],"are":[194],"at":[196],"Bioinformatics":[197],"online.":[198]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":11},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":23},{"year":2020,"cited_by_count":22},{"year":2019,"cited_by_count":20},{"year":2018,"cited_by_count":16},{"year":2017,"cited_by_count":13},{"year":2016,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
