{"id":"https://openalex.org/W2413242448","doi":"https://doi.org/10.1093/bioinformatics/btw238","title":"MetalPredator: a web server to predict iron\u2013sulfur cluster binding proteomes","display_name":"MetalPredator: a web server to predict iron\u2013sulfur cluster binding proteomes","publication_year":2016,"publication_date":"2016-06-06","ids":{"openalex":"https://openalex.org/W2413242448","doi":"https://doi.org/10.1093/bioinformatics/btw238","mag":"2413242448","pmid":"https://pubmed.ncbi.nlm.nih.gov/27273670"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btw238","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw238","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/18/2850/24406777/btw238.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/18/2850/24406777/btw238.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108116176","display_name":"Yana Valasatava","orcid":null},"institutions":[{"id":"https://openalex.org/I4210158702","display_name":"Resonance Research (United States)","ror":"https://ror.org/05t871q54","country_code":"US","type":"company","lineage":["https://openalex.org/I4210158702"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yana Valasatava","raw_affiliation_strings":["1 Magnetic Resonance Center (CERM)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Magnetic Resonance Center (CERM)","institution_ids":["https://openalex.org/I4210158702"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084306542","display_name":"Antonio Rosato","orcid":"https://orcid.org/0000-0001-6172-0368"},"institutions":[{"id":"https://openalex.org/I4210158702","display_name":"Resonance Research (United States)","ror":"https://ror.org/05t871q54","country_code":"US","type":"company","lineage":["https://openalex.org/I4210158702"]},{"id":"https://openalex.org/I45084792","display_name":"University of Florence","ror":"https://ror.org/04jr1s763","country_code":"IT","type":"education","lineage":["https://openalex.org/I45084792"]}],"countries":["IT","US"],"is_corresponding":false,"raw_author_name":"Antonio Rosato","raw_affiliation_strings":["1 Magnetic Resonance Center (CERM)","2 Department of Chemistry, University of Florence, 50019 Sesto Fiorentino, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Magnetic Resonance Center (CERM)","institution_ids":["https://openalex.org/I4210158702"]},{"raw_affiliation_string":"2 Department of Chemistry, University of Florence, 50019 Sesto Fiorentino, Italy","institution_ids":["https://openalex.org/I45084792"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050426594","display_name":"Lucia Banci","orcid":"https://orcid.org/0000-0003-0562-5774"},"institutions":[{"id":"https://openalex.org/I4210158702","display_name":"Resonance Research (United States)","ror":"https://ror.org/05t871q54","country_code":"US","type":"company","lineage":["https://openalex.org/I4210158702"]},{"id":"https://openalex.org/I45084792","display_name":"University of Florence","ror":"https://ror.org/04jr1s763","country_code":"IT","type":"education","lineage":["https://openalex.org/I45084792"]}],"countries":["IT","US"],"is_corresponding":false,"raw_author_name":"Lucia Banci","raw_affiliation_strings":["1 Magnetic Resonance Center (CERM)","2 Department of Chemistry, University of Florence, 50019 Sesto Fiorentino, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Magnetic Resonance Center (CERM)","institution_ids":["https://openalex.org/I4210158702"]},{"raw_affiliation_string":"2 Department of Chemistry, University of Florence, 50019 Sesto Fiorentino, Italy","institution_ids":["https://openalex.org/I45084792"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079457434","display_name":"Claudia Andreini","orcid":"https://orcid.org/0000-0003-4329-8225"},"institutions":[{"id":"https://openalex.org/I4210158702","display_name":"Resonance Research (United States)","ror":"https://ror.org/05t871q54","country_code":"US","type":"company","lineage":["https://openalex.org/I4210158702"]},{"id":"https://openalex.org/I45084792","display_name":"University of Florence","ror":"https://ror.org/04jr1s763","country_code":"IT","type":"education","lineage":["https://openalex.org/I45084792"]}],"countries":["IT","US"],"is_corresponding":true,"raw_author_name":"Claudia Andreini","raw_affiliation_strings":["1 Magnetic Resonance Center (CERM)","2 Department of Chemistry, University of Florence, 50019 Sesto Fiorentino, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Magnetic Resonance Center (CERM)","institution_ids":["https://openalex.org/I4210158702"]},{"raw_affiliation_string":"2 Department of Chemistry, University of Florence, 50019 Sesto Fiorentino, Italy","institution_ids":["https://openalex.org/I45084792"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5079457434"],"corresponding_institution_ids":["https://openalex.org/I4210158702","https://openalex.org/I45084792"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.5782,"has_fulltext":false,"cited_by_count":75,"citation_normalized_percentile":{"value":0.83333662,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"32","issue":"18","first_page":"2850","last_page":"2852"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11626","display_name":"Metalloenzymes and iron-sulfur proteins","score":0.8859000205993652,"subfield":{"id":"https://openalex.org/subfields/2105","display_name":"Renewable Energy, Sustainability and the Environment"},"field":{"id":"https://openalex.org/fields/21","display_name":"Energy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11626","display_name":"Metalloenzymes and iron-sulfur proteins","score":0.8859000205993652,"subfield":{"id":"https://openalex.org/subfields/2105","display_name":"Renewable Energy, Sustainability and the Environment"},"field":{"id":"https://openalex.org/fields/21","display_name":"Energy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10452","display_name":"Iron Metabolism and Disorders","score":0.013899999670684338,"subfield":{"id":"https://openalex.org/subfields/2720","display_name":"Hematology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11231","display_name":"Microbial Fuel Cells and Bioremediation","score":0.008500000461935997,"subfield":{"id":"https://openalex.org/subfields/2305","display_name":"Environmental Engineering"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.7935476899147034},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5658451318740845},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.521321713924408},{"id":"https://openalex.org/keywords/cluster","display_name":"Cluster (spacecraft)","score":0.43891599774360657},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.43137645721435547},{"id":"https://openalex.org/keywords/sulfur","display_name":"Sulfur","score":0.42408332228660583},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.40765461325645447},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.35506922006607056},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.26792752742767334},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2509869933128357},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.23059779405593872},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.20821145176887512}],"concepts":[{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.7935476899147034},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5658451318740845},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.521321713924408},{"id":"https://openalex.org/C164866538","wikidata":"https://www.wikidata.org/wiki/Q367351","display_name":"Cluster (spacecraft)","level":2,"score":0.43891599774360657},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.43137645721435547},{"id":"https://openalex.org/C518881349","wikidata":"https://www.wikidata.org/wiki/Q682","display_name":"Sulfur","level":2,"score":0.42408332228660583},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.40765461325645447},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.35506922006607056},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.26792752742767334},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2509869933128357},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.23059779405593872},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.20821145176887512},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005544","descriptor_name":"Forecasting","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005544","descriptor_name":"Forecasting","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005544","descriptor_name":"Forecasting","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007501","descriptor_name":"Iron","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007501","descriptor_name":"Iron","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007501","descriptor_name":"Iron","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013455","descriptor_name":"Sulfur","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013455","descriptor_name":"Sulfur","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013455","descriptor_name":"Sulfur","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btw238","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw238","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/18/2850/24406777/btw238.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27273670","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27273670","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:flore.unifi.it:2158/1073571","is_oa":false,"landing_page_url":"http://hdl.handle.net/2158/1073571","pdf_url":null,"source":{"id":"https://openalex.org/S4306402033","display_name":"Florence Research (University of Florence)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45084792","host_organization_name":"University of Florence","host_organization_lineage":["https://openalex.org/I45084792"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/18/2850","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/18/2850","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:zenodo.org:100819","is_oa":true,"landing_page_url":"https://www.openaccessrepository.it/record/100819","pdf_url":null,"source":{"id":"https://openalex.org/S4306402478","display_name":"INFM-OAR (INFN Catania)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210116497","host_organization_name":"Istituto Nazionale di Fisica Nucleare, Sezione di Catania","host_organization_lineage":["https://openalex.org/I4210116497"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btw238","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw238","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/18/2850/24406777/btw238.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2413242448.pdf"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W120708166","https://openalex.org/W1980227664","https://openalex.org/W1992176190","https://openalex.org/W2029469631","https://openalex.org/W2050828231","https://openalex.org/W2052498582","https://openalex.org/W2053486065","https://openalex.org/W2073798474","https://openalex.org/W2099207146","https://openalex.org/W2130479394","https://openalex.org/W2151831732","https://openalex.org/W2275585418"],"related_works":["https://openalex.org/W2150436753","https://openalex.org/W1992298044","https://openalex.org/W1994062818","https://openalex.org/W2027431076","https://openalex.org/W1787461325","https://openalex.org/W2040675487","https://openalex.org/W3142536350","https://openalex.org/W2036414439","https://openalex.org/W1973959357","https://openalex.org/W4206749311"],"abstract_inverted_index":{"MOTIVATION:":[0],"The":[1,61],"prediction":[2],"of":[3],"the":[4],"iron-sulfur":[5,22,37],"proteome":[6],"is":[7,46,64],"highly":[8],"desirable":[9],"for":[10],"biomedical":[11],"and":[12,56],"biological":[13],"research":[14],"but":[15],"a":[16,32],"freely":[17,65],"available":[18,66,76],"tool":[19],"to":[20,35,48],"predict":[21,36],"proteins":[23,38],"has":[24],"not":[25],"been":[26],"developed":[27,31],"yet.":[28],"RESULTS:":[29],"We":[30],"web":[33,62],"server":[34,63],"from":[39],"protein":[40],"sequence(s).":[41],"This":[42],"tool,":[43],"called":[44],"MetalPredator,":[45],"able":[47],"process":[49],"complete":[50],"proteomes":[51],"rapidly":[52],"with":[53],"high":[54],"recall":[55],"precision.":[57],"AVAILABILITY":[58],"AND":[59],"IMPLEMENTATION:":[60],"at:":[67],"http://metalweb.cerm.unifi.it/tools/metalpredator/":[68],"CONTACT:":[69],"andreini@cerm.unifi.it":[70],"SUPPLEMENTARY":[71],"INFORMATION:":[72],"Supplementary":[73],"data":[74],"are":[75],"at":[77],"Bioinformatics":[78],"online.":[79]},"counts_by_year":[{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":14},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":3}],"updated_date":"2026-06-05T09:01:59.212387","created_date":"2025-10-10T00:00:00"}
