{"id":"https://openalex.org/W2291811199","doi":"https://doi.org/10.1093/bioinformatics/btw102","title":"NMRPro: an integrated web component for interactive processing and visualization of NMR spectra","display_name":"NMRPro: an integrated web component for interactive processing and visualization of NMR spectra","publication_year":2016,"publication_date":"2016-02-26","ids":{"openalex":"https://openalex.org/W2291811199","doi":"https://doi.org/10.1093/bioinformatics/btw102","mag":"2291811199","pmid":"https://pubmed.ncbi.nlm.nih.gov/27153725"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btw102","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw102","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/13/2067/16920354/btw102.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/13/2067/16920354/btw102.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038054571","display_name":"Ahmed Mohamed","orcid":"https://orcid.org/0000-0001-6507-5300"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I4399598384","display_name":"Kyoto University Institute for Chemical Research","ror":"https://ror.org/0349bbg69","country_code":null,"type":"facility","lineage":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Ahmed Mohamed","raw_affiliation_strings":["Bioinformatics Center, Institute for Chemical Research, Kyoto University, Kyoto, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Center, Institute for Chemical Research, Kyoto University, Kyoto, Japan","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061062178","display_name":"Canh Hao Nguyen","orcid":"https://orcid.org/0000-0002-0274-5693"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I4399598384","display_name":"Kyoto University Institute for Chemical Research","ror":"https://ror.org/0349bbg69","country_code":null,"type":"facility","lineage":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Canh Hao Nguyen","raw_affiliation_strings":["Bioinformatics Center, Institute for Chemical Research, Kyoto University, Kyoto, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Center, Institute for Chemical Research, Kyoto University, Kyoto, Japan","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059001924","display_name":"Hiroshi Mamitsuka","orcid":"https://orcid.org/0000-0002-6607-5617"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I4399598384","display_name":"Kyoto University Institute for Chemical Research","ror":"https://ror.org/0349bbg69","country_code":null,"type":"facility","lineage":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Hiroshi Mamitsuka","raw_affiliation_strings":["Bioinformatics Center, Institute for Chemical Research, Kyoto University, Kyoto, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Center, Institute for Chemical Research, Kyoto University, Kyoto, Japan","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5038054571"],"corresponding_institution_ids":["https://openalex.org/I22299242","https://openalex.org/I4399598384"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.8706,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.75789929,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"32","issue":"13","first_page":"2067","last_page":"2068"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9366000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9366000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12748","display_name":"Molecular spectroscopy and chirality","score":0.010599999688565731,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.007400000002235174,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.8533360362052917},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7745317220687866},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.6040990352630615},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.5489809513092041},{"id":"https://openalex.org/keywords/component","display_name":"Component (thermodynamics)","score":0.5279822945594788},{"id":"https://openalex.org/keywords/interactive-visualization","display_name":"Interactive visualization","score":0.4979698657989502},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.46089687943458557},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.45974001288414},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.44856661558151245},{"id":"https://openalex.org/keywords/client-side","display_name":"Client-side","score":0.4357939064502716},{"id":"https://openalex.org/keywords/server-side","display_name":"Server-side","score":0.4345817565917969},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.38286474347114563},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3719075322151184},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2354419231414795},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.1585073173046112}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.8533360362052917},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7745317220687866},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.6040990352630615},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.5489809513092041},{"id":"https://openalex.org/C168167062","wikidata":"https://www.wikidata.org/wiki/Q1117970","display_name":"Component (thermodynamics)","level":2,"score":0.5279822945594788},{"id":"https://openalex.org/C64073096","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Interactive visualization","level":3,"score":0.4979698657989502},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.46089687943458557},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.45974001288414},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.44856661558151245},{"id":"https://openalex.org/C202477664","wikidata":"https://www.wikidata.org/wiki/Q1352449","display_name":"Client-side","level":2,"score":0.4357939064502716},{"id":"https://openalex.org/C14414571","wikidata":"https://www.wikidata.org/wiki/Q519081","display_name":"Server-side","level":2,"score":0.4345817565917969},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.38286474347114563},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3719075322151184},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2354419231414795},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1585073173046112},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009682","descriptor_name":"Magnetic Resonance Spectroscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009682","descriptor_name":"Magnetic Resonance Spectroscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009682","descriptor_name":"Magnetic Resonance Spectroscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btw102","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw102","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/13/2067/16920354/btw102.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27153725","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27153725","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/13/2067","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/13/2067","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btw102","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw102","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/13/2067/16920354/btw102.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.4699999988079071,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G7862711421","display_name":"Estimating data structure embedded in semi-structured data","funder_award_id":"24300054","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"}],"funders":[{"id":"https://openalex.org/F4320320912","display_name":"Ministry of Education, Culture, Sports, Science and Technology","ror":"https://ror.org/048rj2z13"},{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2291811199.pdf","grobid_xml":"https://content.openalex.org/works/W2291811199.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W1485729984","https://openalex.org/W1989331024","https://openalex.org/W2027878425","https://openalex.org/W2063028213","https://openalex.org/W2102481302","https://openalex.org/W2105330582","https://openalex.org/W2135607659","https://openalex.org/W2144637535","https://openalex.org/W4243153500","https://openalex.org/W6675109458"],"related_works":["https://openalex.org/W4302890120","https://openalex.org/W3005688497","https://openalex.org/W4322735059","https://openalex.org/W4301042531","https://openalex.org/W4319448716","https://openalex.org/W2993438822","https://openalex.org/W3003811204","https://openalex.org/W4387881033","https://openalex.org/W3193875279","https://openalex.org/W1989972737"],"abstract_inverted_index":{"UNLABELLED:":[0],"The":[1],"popularity":[2],"of":[3,16,19,52],"using":[4],"NMR":[5,20,53,110],"spectroscopy":[6],"in":[7],"metabolomics":[8],"and":[9,24,37,62,90,121,131],"natural":[10],"products":[11],"has":[12],"driven":[13],"the":[14,50,59,113],"development":[15],"an":[17],"array":[18],"spectral":[21],"analysis":[22,51],"tools":[23],"databases.":[25],"Particularly,":[26],"web":[27,43,47,74,83],"applications":[28,48],"are":[29,35,134,144],"well":[30],"used":[31],"recently":[32],"because":[33],"they":[34,56],"platform-independent":[36],"easy":[38],"to":[39,106],"extend":[40],"through":[41,100],"reusable":[42],"components.":[44],"Currently":[45],"available":[46,135,145],"provide":[49],"spectra.":[54],"However,":[55],"still":[57],"lack":[58],"necessary":[60],"processing":[61,89,95],"interactive":[63,88,98,125],"visualization":[64,99],"functionalities.":[65],"To":[66],"overcome":[67],"these":[68],"limitations,":[69],"we":[70],"present":[71],"NMRPro,":[72],"a":[73,103,115],"component":[75],"that":[76],"can":[77],"be":[78],"easily":[79],"incorporated":[80],"into":[81],"current":[82],"applications,":[84],"enabling":[85],"easy-to-use":[86],"online":[87],"visualization.":[91,126],"NMRPro":[92],"integrates":[93],"server-side":[94],"with":[96],"client-side":[97,124],"three":[101],"parts:":[102],"python":[104],"package":[105],"efficiently":[107],"process":[108],"large":[109],"datasets":[111],"on":[112],"server-side,":[114],"Django":[116],"App":[117],"managing":[118],"server-client":[119],"interaction,":[120],"SpecdrawJS":[122],"for":[123],"AVAILABILITY":[127],"AND":[128],"IMPLEMENTATION:":[129],"Demo":[130],"installation":[132],"instructions":[133],"at":[136,146],"http://mamitsukalab.org/tools/nmrpro/":[137],"CONTACT:":[138],"mohamed@kuicr.kyoto-u.ac.jp":[139],"SUPPLEMENTARY":[140],"INFORMATION:":[141],"Supplementary":[142],"data":[143],"Bioinformatics":[147],"online.":[148]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":4},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2}],"updated_date":"2026-06-22T08:00:12.763002","created_date":"2025-10-10T00:00:00"}
