{"id":"https://openalex.org/W2333358954","doi":"https://doi.org/10.1093/bioinformatics/btw101","title":"Alpha-CENTAURI: assessing novel centromeric repeat sequence variation with long read sequencing","display_name":"Alpha-CENTAURI: assessing novel centromeric repeat sequence variation with long read sequencing","publication_year":2016,"publication_date":"2016-02-24","ids":{"openalex":"https://openalex.org/W2333358954","doi":"https://doi.org/10.1093/bioinformatics/btw101","mag":"2333358954","pmid":"https://pubmed.ncbi.nlm.nih.gov/27153570"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btw101","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw101","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/13/1921/16920332/btw101.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/13/1921/16920332/btw101.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014655203","display_name":"Volkan Sevi\u0307m","orcid":"https://orcid.org/0000-0002-6553-7410"},"institutions":[{"id":"https://openalex.org/I68554272","display_name":"Pacific Biosciences (United States)","ror":"https://ror.org/00fcszb13","country_code":"US","type":"company","lineage":["https://openalex.org/I68554272"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Volkan Sevim","raw_affiliation_strings":["1 Pacific Biosciences, Inc., Menlo Park, CA 94025, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Pacific Biosciences, Inc., Menlo Park, CA 94025, USA","institution_ids":["https://openalex.org/I68554272"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008757230","display_name":"Ali Bashir","orcid":"https://orcid.org/0000-0002-5240-9604"},"institutions":[{"id":"https://openalex.org/I98704320","display_name":"Icahn School of Medicine at Mount Sinai","ror":"https://ror.org/04a9tmd77","country_code":"US","type":"education","lineage":["https://openalex.org/I1320796813","https://openalex.org/I98704320"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ali Bashir","raw_affiliation_strings":["2 Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, 1425 Madison Avenue, New York, NY 10029, USA","3 Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, 1425 Madison Avenue, New York, NY 10029, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2 Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, 1425 Madison Avenue, New York, NY 10029, USA","institution_ids":["https://openalex.org/I98704320"]},{"raw_affiliation_string":"3 Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, 1425 Madison Avenue, New York, NY 10029, USA","institution_ids":["https://openalex.org/I98704320"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000764422","display_name":"Chen-Shan Chin","orcid":"https://orcid.org/0000-0003-4394-2455"},"institutions":[{"id":"https://openalex.org/I68554272","display_name":"Pacific Biosciences (United States)","ror":"https://ror.org/00fcszb13","country_code":"US","type":"company","lineage":["https://openalex.org/I68554272"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chen-Shan Chin","raw_affiliation_strings":["1 Pacific Biosciences, Inc., Menlo Park, CA 94025, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Pacific Biosciences, Inc., Menlo Park, CA 94025, USA","institution_ids":["https://openalex.org/I68554272"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045267050","display_name":"Karen H. Miga","orcid":"https://orcid.org/0000-0002-3670-4507"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Karen H. Miga","raw_affiliation_strings":["4 Center for Biomolecular Science and Engineering, University of California, Santa Cruz, CA 95064, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"4 Center for Biomolecular Science and Engineering, University of California, Santa Cruz, CA 95064, USA","institution_ids":["https://openalex.org/I185103710"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5008757230"],"corresponding_institution_ids":["https://openalex.org/I98704320"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":15.0188,"has_fulltext":true,"cited_by_count":61,"citation_normalized_percentile":{"value":0.98489385,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"32","issue":"13","first_page":"1921","last_page":"1924"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.8342999815940857,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.8342999815940857,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.07580000162124634,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.06759999692440033,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/tandem-repeat","display_name":"Tandem repeat","score":0.6448827385902405},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5451478362083435},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5450695753097534},{"id":"https://openalex.org/keywords/satellite-dna","display_name":"Satellite DNA","score":0.5232940316200256},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.47253182530403137},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.46392354369163513},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.461087167263031},{"id":"https://openalex.org/keywords/structural-variation","display_name":"Structural variation","score":0.4553365111351013},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.36707550287246704},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1257820725440979}],"concepts":[{"id":"https://openalex.org/C27149982","wikidata":"https://www.wikidata.org/wiki/Q3456514","display_name":"Tandem repeat","level":4,"score":0.6448827385902405},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5451478362083435},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5450695753097534},{"id":"https://openalex.org/C140367098","wikidata":"https://www.wikidata.org/wiki/Q425319","display_name":"Satellite DNA","level":4,"score":0.5232940316200256},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.47253182530403137},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.46392354369163513},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.461087167263031},{"id":"https://openalex.org/C151020129","wikidata":"https://www.wikidata.org/wiki/Q7625067","display_name":"Structural variation","level":4,"score":0.4553365111351013},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.36707550287246704},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1257820725440979}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002503","descriptor_name":"Centromere","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002503","descriptor_name":"Centromere","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002503","descriptor_name":"Centromere","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006828","descriptor_name":"Hydatidiform Mole","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006828","descriptor_name":"Hydatidiform Mole","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006828","descriptor_name":"Hydatidiform Mole","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011247","descriptor_name":"Pregnancy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011247","descriptor_name":"Pregnancy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011247","descriptor_name":"Pregnancy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016384","descriptor_name":"Consensus Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016384","descriptor_name":"Consensus Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016384","descriptor_name":"Consensus Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020080","descriptor_name":"Tandem Repeat Sequences","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020080","descriptor_name":"Tandem Repeat Sequences","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020080","descriptor_name":"Tandem Repeat Sequences","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btw101","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw101","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/13/1921/16920332/btw101.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27153570","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27153570","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:3885729","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4920115","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/13/1921","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/13/1921","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btw101","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw101","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/13/1921/16920332/btw101.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2333358954.pdf","grobid_xml":"https://content.openalex.org/works/W2333358954.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W1529475329","https://openalex.org/W1966936568","https://openalex.org/W1978844013","https://openalex.org/W1984793082","https://openalex.org/W1991008526","https://openalex.org/W2013992544","https://openalex.org/W2031340189","https://openalex.org/W2071501400","https://openalex.org/W2083864663","https://openalex.org/W2095259929","https://openalex.org/W2102407536","https://openalex.org/W2111913614","https://openalex.org/W2120990510","https://openalex.org/W2130200371","https://openalex.org/W2142642738","https://openalex.org/W2151831732","https://openalex.org/W2164169825","https://openalex.org/W4245335079","https://openalex.org/W6645123061","https://openalex.org/W6684264253"],"related_works":["https://openalex.org/W2203319208","https://openalex.org/W2084665921","https://openalex.org/W2975106599","https://openalex.org/W2031351362","https://openalex.org/W2027745357","https://openalex.org/W2061403980","https://openalex.org/W4239858148","https://openalex.org/W3193218983","https://openalex.org/W2146544061","https://openalex.org/W2952203878"],"abstract_inverted_index":{"MOTIVATION:":[0],"Long":[1],"arrays":[2],"of":[3,11,24,57,66,86,108,128,171],"near-identical":[4],"tandem":[5,69],"repeats":[6],"are":[7,243,254],"a":[8,22,104,207,211],"common":[9],"feature":[10],"centromeric":[12,68],"and":[13,111,169,238],"subtelomeric":[14],"regions":[15],"in":[16,130,139,162,166,199,228],"complex":[17],"genomes.":[18],"These":[19],"sequences":[20,222],"present":[21],"source":[23,239],"repeat":[25,42,61,70,132,153,163,167,195,213],"structure":[26,43,133],"diversity":[27],"that":[28,44,83,215],"is":[29,112,148],"commonly":[30],"ignored":[31],"by":[32,115,179,187],"standard":[33],"genomic":[34],"tools.":[35],"Unlike":[36],"reads":[37,53,97,138],"shorter":[38],"than":[39],"the":[40,126,140,185],"underlying":[41],"rely":[45],"on":[46,96,202],"indirect":[47],"inference":[48,56],"methods,":[49],"e.g.":[50],"assembly,":[51,100],"long":[52],"allow":[54],"direct":[55],"satellite":[58,78,136,226],"higher":[59],"order":[60,194],"structure.":[62],"To":[63],"automate":[64],"characterization":[65],"local":[67,152],"sequence":[71,118,204,212],"variation":[72],"we":[73],"have":[74],"designed":[75,149],"Alpha-CENTAURI":[76,129,197,242],"(ALPHA":[77],"CENTromeric":[79],"AUtomated":[80],"Repeat":[81],"Identification),":[82],"takes":[84],"advantage":[85],"Pacific":[87],"Bioscience":[88],"long-reads":[89],"from":[90],"whole-genome":[91],"sequencing":[92],"datasets.":[93],"By":[94],"operating":[95],"prior":[98],"to":[99,121,150,209],"our":[101],"approach":[102],"provides":[103],"more":[105],"comprehensive":[106],"set":[107],"repeat-structure":[109],"variants":[110],"not":[113],"impacted":[114],"rearrangements":[116,161],"or":[117],"underrepresentation":[119],"due":[120],"misassembly.":[122],"RESULTS:":[123],"We":[124,183],"demonstrate":[125],"utility":[127],"characterizing":[131],"for":[134,156,224,241],"alpha":[135],"containing":[137],"hydatidiform":[141],"mole":[142],"(CHM1,":[143],"haploid-like)":[144],"genome.":[145],"The":[146],"pipeline":[147],"report":[151],"organization":[154],"summaries":[155],"each":[157],"read,":[158],"thereby":[159],"monitoring":[160],"units,":[164],"shifts":[165],"orientation":[168],"sites":[170],"array":[172],"transition":[173],"into":[174],"non-satellite":[175],"DNA,":[176],"typically":[177],"defined":[178],"transposable":[180],"element":[181],"insertion.":[182],"validate":[184],"method":[186,208],"showing":[188],"consistency":[189],"with":[190],"existing":[191],"centromere":[192],"high":[193],"references.":[196],"can,":[198],"principle,":[200],"run":[201],"any":[203],"data,":[205],"offering":[206],"generate":[210],"resolution":[214],"could":[216],"be":[217],"readily":[218],"performed":[219],"using":[220],"consensus":[221],"available":[223,245,255],"other":[225],"families":[227],"genomes":[229],"without":[230],"high-quality":[231],"reference":[232],"assemblies.":[233],"AVAILABILITY":[234],"AND":[235],"IMPLEMENTATION:":[236],"Documentation":[237],"code":[240],"freely":[244],"at":[246,256],"http://github.com/volkansevim/alpha-CENTAURI":[247],"CONTACT:":[248],"ali.bashir@mssm.edu":[249],"SUPPLEMENTARY":[250],"INFORMATION:":[251],"Supplementary":[252],"data":[253],"Bioinformatics":[257],"online.":[258]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":11},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":6}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}