{"id":"https://openalex.org/W2257061422","doi":"https://doi.org/10.1093/bioinformatics/btv766","title":"UCSC Data Integrator and Variant Annotation Integrator","display_name":"UCSC Data Integrator and Variant Annotation Integrator","publication_year":2016,"publication_date":"2016-01-06","ids":{"openalex":"https://openalex.org/W2257061422","doi":"https://doi.org/10.1093/bioinformatics/btv766","mag":"2257061422","pmid":"https://pubmed.ncbi.nlm.nih.gov/26740527"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv766","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv766","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/9/1430/21218675/btv766.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/9/1430/21218675/btv766.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031905987","display_name":"Angie S. Hinrichs","orcid":"https://orcid.org/0000-0002-1697-1130"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Angie S. Hinrichs","raw_affiliation_strings":["1 Genomics Institute, University of California, Santa Cruz, CA, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Genomics Institute, University of California, Santa Cruz, CA, USA,","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063722321","display_name":"Brian J. Raney","orcid":"https://orcid.org/0000-0002-9708-1390"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brian J. Raney","raw_affiliation_strings":["1 Genomics Institute, University of California, Santa Cruz, CA, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Genomics Institute, University of California, Santa Cruz, CA, USA,","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061395094","display_name":"Matthew L Speir","orcid":"https://orcid.org/0000-0002-2035-1129"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matthew L. Speir","raw_affiliation_strings":["1 Genomics Institute, University of California, Santa Cruz, CA, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Genomics Institute, University of California, Santa Cruz, CA, USA,","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033268475","display_name":"Brooke Rhead","orcid":"https://orcid.org/0000-0002-1839-4883"},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brooke Rhead","raw_affiliation_strings":["2 Computational Biology Graduate Group, University of California, Berkeley, CA, USA and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2 Computational Biology Graduate Group, University of California, Berkeley, CA, USA and","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110217612","display_name":"Jonathan D. Casper","orcid":"https://orcid.org/0009-0009-5722-1916"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jonathan Casper","raw_affiliation_strings":["1 Genomics Institute, University of California, Santa Cruz, CA, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Genomics Institute, University of California, Santa Cruz, CA, USA,","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076917634","display_name":"Donna Karolchik","orcid":null},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Donna Karolchik","raw_affiliation_strings":["1 Genomics Institute, University of California, Santa Cruz, CA, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Genomics Institute, University of California, Santa Cruz, CA, USA,","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072909873","display_name":"Robert M. Kuhn","orcid":"https://orcid.org/0000-0001-8103-7793"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert M. Kuhn","raw_affiliation_strings":["1 Genomics Institute, University of California, Santa Cruz, CA, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Genomics Institute, University of California, Santa Cruz, CA, USA,","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044656439","display_name":"Kate R. Rosenbloom","orcid":"https://orcid.org/0000-0001-8799-4826"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kate R. Rosenbloom","raw_affiliation_strings":["1 Genomics Institute, University of California, Santa Cruz, CA, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Genomics Institute, University of California, Santa Cruz, CA, USA,","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034427205","display_name":"Ann S. Zweig","orcid":null},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ann S. Zweig","raw_affiliation_strings":["1 Genomics Institute, University of California, Santa Cruz, CA, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Genomics Institute, University of California, Santa Cruz, CA, USA,","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090849321","display_name":"David Haussler","orcid":"https://orcid.org/0000-0003-1533-4575"},"institutions":[{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Haussler","raw_affiliation_strings":["1 Genomics Institute, University of California, Santa Cruz, CA, USA,","3 Howard Hughes Medical Institute, University of California, Santa Cruz, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Genomics Institute, University of California, Santa Cruz, CA, USA,","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"3 Howard Hughes Medical Institute, University of California, Santa Cruz, CA, USA","institution_ids":["https://openalex.org/I1344073410","https://openalex.org/I185103710"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5105297342","display_name":"W. James Kent","orcid":null},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"W. James Kent","raw_affiliation_strings":["1 Genomics Institute, University of California, Santa Cruz, CA, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Genomics Institute, University of California, Santa Cruz, CA, USA,","institution_ids":["https://openalex.org/I185103710"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5031905987"],"corresponding_institution_ids":["https://openalex.org/I185103710"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":6.5685,"has_fulltext":true,"cited_by_count":78,"citation_normalized_percentile":{"value":0.96581983,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"32","issue":"9","first_page":"1430","last_page":"1432"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.76419997215271,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.76419997215271,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.07670000195503235,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.03849999979138374,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.9088743329048157},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.72076416015625},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6622960567474365},{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.6351954936981201},{"id":"https://openalex.org/keywords/integrator","display_name":"Integrator","score":0.6113907694816589},{"id":"https://openalex.org/keywords/javascript","display_name":"JavaScript","score":0.5802721381187439},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.4757480323314667},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4568420946598053},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.4415455460548401},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.36615872383117676},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.3661084473133087},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3398323357105255},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33890974521636963},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.29623138904571533},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17533817887306213},{"id":"https://openalex.org/keywords/bandwidth","display_name":"Bandwidth (computing)","score":0.1673508584499359},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.14519557356834412},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12712350487709045},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.11604031920433044},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10840609669685364},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.09529376029968262}],"concepts":[{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.9088743329048157},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.72076416015625},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6622960567474365},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.6351954936981201},{"id":"https://openalex.org/C79518650","wikidata":"https://www.wikidata.org/wiki/Q2081431","display_name":"Integrator","level":3,"score":0.6113907694816589},{"id":"https://openalex.org/C544833334","wikidata":"https://www.wikidata.org/wiki/Q2005","display_name":"JavaScript","level":2,"score":0.5802721381187439},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.4757480323314667},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4568420946598053},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.4415455460548401},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.36615872383117676},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.3661084473133087},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3398323357105255},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33890974521636963},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.29623138904571533},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17533817887306213},{"id":"https://openalex.org/C2776257435","wikidata":"https://www.wikidata.org/wiki/Q1576430","display_name":"Bandwidth (computing)","level":2,"score":0.1673508584499359},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.14519557356834412},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12712350487709045},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.11604031920433044},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10840609669685364},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.09529376029968262}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/bioinformatics/btv766","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv766","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/9/1430/21218675/btv766.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26740527","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26740527","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:ark:/13030/qt02r1b7qn","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:escholarship.org/ark:/13030/qt4cb62192","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/4cb62192","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics (Oxford, England), vol 32, iss 9","raw_type":"article"},{"id":"pmh:oai:escholarship.org:ark:/13030/qt02r1b7qn","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/02r1b7qn","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, vol 32, iss 9","raw_type":"article"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/9/1430","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/9/1430","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:4848401","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4848401","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv766","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv766","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/9/1430/21218675/btv766.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1234929443","display_name":null,"funder_award_id":"U41 HG002371","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G526700612","display_name":null,"funder_award_id":"U54HG007990","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"}],"funders":[{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2257061422.pdf","grobid_xml":"https://content.openalex.org/works/W2257061422.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W1984068087","https://openalex.org/W2096525273","https://openalex.org/W2101412130","https://openalex.org/W2104570606","https://openalex.org/W2106578986","https://openalex.org/W2108871359","https://openalex.org/W2123171788","https://openalex.org/W2126958666","https://openalex.org/W2145191876","https://openalex.org/W2145809383","https://openalex.org/W2149992227","https://openalex.org/W2167852161","https://openalex.org/W2168783124","https://openalex.org/W2176686025","https://openalex.org/W2259938310","https://openalex.org/W4245543257"],"related_works":["https://openalex.org/W2158272128","https://openalex.org/W2160379721","https://openalex.org/W2009935171","https://openalex.org/W2144311691","https://openalex.org/W2146734921","https://openalex.org/W3143592475","https://openalex.org/W2057568687","https://openalex.org/W2989829966","https://openalex.org/W2151651283","https://openalex.org/W2171622167"],"abstract_inverted_index":{"UNLABELLED:":[0],"Two":[1],"new":[2],"tools":[3,122],"on":[4],"the":[5,22,46,54,129],"UCSC":[6],"Genome":[7],"Browser":[8],"web":[9,121],"site":[10],"provide":[11],"improved":[12],"ways":[13],"of":[14,76,83],"combining":[15],"information":[16],"from":[17,30,38,45,53,105,147],"multiple":[18,39],"datasets,":[19],"optionally":[20,97],"including":[21,101],"user's":[23],"own":[24],"custom":[25],"track":[26,31,48],"data":[27,29,40,78,169],"and/or":[28],"hubs.":[32],"The":[33,57,120,138],"Data":[34],"Integrator":[35,60],"combines":[36],"columns":[37],"tracks,":[41],"showing":[42],"all":[43],"items":[44,52],"first":[47],"along":[49],"with":[50],"overlapping":[51,89],"other":[55],"tracks.":[56],"Variant":[58],"Annotation":[59],"is":[61,132,145,150],"tailored":[62],"to":[63,67],"adding":[64],"functional":[65],"annotations":[66,100],"variant":[68],"calls;":[69],"it":[70,96],"offers":[71],"a":[72,162],"more":[73],"restricted":[74],"set":[75],"underlying":[77,130],"tracks":[79,113],"but":[80],"adds":[81,98],"predictions":[82],"each":[84],"variant's":[85],"consequences":[86],"for":[87,107,134,153],"any":[88],"or":[90],"nearby":[91],"gene":[92],"transcript.":[93],"When":[94],"available,":[95],"additional":[99],"effect":[102],"prediction":[103],"scores":[104],"dbNSFP":[106],"missense":[108],"mutations,":[109],"ENCODE":[110],"regulatory":[111],"summary":[112],"and":[114,128,143,149,155],"conservation":[115],"scores.":[116],"AVAILABILITY":[117],"AND":[118],"IMPLEMENTATION:":[119],"are":[123,170],"freely":[124,151],"available":[125,133,146,152,171],"at":[126,136,172],"http://genome.ucsc.edu/":[127],"database":[131],"download":[135],"http://hgdownload.cse.ucsc.edu/":[137],"software":[139],"(written":[140],"in":[141],"C":[142],"Javascript)":[144],"https://genome-store.ucsc.edu/":[148],"academic":[154],"non-profit":[156],"usage;":[157],"commercial":[158],"users":[159],"must":[160],"obtain":[161],"license.":[163],"CONTACT:":[164],"angie@soe.ucsc.edu":[165],"SUPPLEMENTARY":[166],"INFORMATION:":[167],"Supplementary":[168],"Bioinformatics":[173],"online.":[174]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":23},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":10},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":3}],"updated_date":"2026-08-08T07:41:36.138363","created_date":"2025-10-10T00:00:00"}
