{"id":"https://openalex.org/W2270582534","doi":"https://doi.org/10.1093/bioinformatics/btv762","title":"Modelling-based experiment retrieval: a case study with gene expression clustering","display_name":"Modelling-based experiment retrieval: a case study with gene expression clustering","publication_year":2016,"publication_date":"2016-01-06","ids":{"openalex":"https://openalex.org/W2270582534","doi":"https://doi.org/10.1093/bioinformatics/btv762","mag":"2270582534","pmid":"https://pubmed.ncbi.nlm.nih.gov/26740526"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv762","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv762","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/9/1388/49019308/bioinformatics_32_9_1388.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/9/1388/49019308/bioinformatics_32_9_1388.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000113707","display_name":"Paul Blomstedt","orcid":null},"institutions":[{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Paul Blomstedt","raw_affiliation_strings":["1 Helsinki Institute for Information Technology HIIT, Department of Computer Science, Aalto University, Espoo, Finland and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Helsinki Institute for Information Technology HIIT, Department of Computer Science, Aalto University, Espoo, Finland and","institution_ids":["https://openalex.org/I32943570","https://openalex.org/I9927081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060445865","display_name":"Ritabrata Dutta","orcid":"https://orcid.org/0000-0001-8209-7747"},"institutions":[{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Ritabrata Dutta","raw_affiliation_strings":["1 Helsinki Institute for Information Technology HIIT, Department of Computer Science, Aalto University, Espoo, Finland and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Helsinki Institute for Information Technology HIIT, Department of Computer Science, Aalto University, Espoo, Finland and","institution_ids":["https://openalex.org/I32943570","https://openalex.org/I9927081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071193068","display_name":"Sohan Seth","orcid":"https://orcid.org/0000-0002-7464-4752"},"institutions":[{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Sohan Seth","raw_affiliation_strings":["1 Helsinki Institute for Information Technology HIIT, Department of Computer Science, Aalto University, Espoo, Finland and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Helsinki Institute for Information Technology HIIT, Department of Computer Science, Aalto University, Espoo, Finland and","institution_ids":["https://openalex.org/I32943570","https://openalex.org/I9927081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081419327","display_name":"Alvis Br\u0101zma","orcid":"https://orcid.org/0000-0001-5988-7409"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Alvis Brazma","raw_affiliation_strings":["2 European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2 European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018305257","display_name":"Samuel Kaski","orcid":"https://orcid.org/0000-0003-1925-9154"},"institutions":[{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Samuel Kaski","raw_affiliation_strings":["1 Helsinki Institute for Information Technology HIIT, Department of Computer Science, Aalto University, Espoo, Finland and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Helsinki Institute for Information Technology HIIT, Department of Computer Science, Aalto University, Espoo, Finland and","institution_ids":["https://openalex.org/I32943570","https://openalex.org/I9927081"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5000113707","https://openalex.org/A5018305257"],"corresponding_institution_ids":["https://openalex.org/I32943570","https://openalex.org/I9927081"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.9619,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.75834254,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"32","issue":"9","first_page":"1388","last_page":"1394"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9804999828338623,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9804999828338623,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10538","display_name":"Data Mining Algorithms and Applications","score":0.003000000026077032,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.0017000000225380063,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7686589360237122},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.6692941188812256},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6577589511871338},{"id":"https://openalex.org/keywords/heuristic","display_name":"Heuristic","score":0.6033324003219604},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5866296887397766},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5332792401313782},{"id":"https://openalex.org/keywords/metric","display_name":"Metric (unit)","score":0.5005073547363281},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.4870014786720276},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.47137510776519775},{"id":"https://openalex.org/keywords/divergence-from-randomness-model","display_name":"Divergence-from-randomness model","score":0.432273805141449},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.4212607145309448},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3892134428024292},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.38580256700515747},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.33223381638526917},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.13257047533988953}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7686589360237122},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.6692941188812256},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6577589511871338},{"id":"https://openalex.org/C173801870","wikidata":"https://www.wikidata.org/wiki/Q201413","display_name":"Heuristic","level":2,"score":0.6033324003219604},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5866296887397766},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5332792401313782},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.5005073547363281},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.4870014786720276},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.47137510776519775},{"id":"https://openalex.org/C149189445","wikidata":"https://www.wikidata.org/wiki/Q5283894","display_name":"Divergence-from-randomness model","level":3,"score":0.432273805141449},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.4212607145309448},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3892134428024292},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.38580256700515747},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.33223381638526917},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.13257047533988953},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/bioinformatics/btv762","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv762","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/9/1388/49019308/bioinformatics_32_9_1388.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26740526","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26740526","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:arXiv.org:1505.05007","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1505.05007","pdf_url":"https://arxiv.org/pdf/1505.05007","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/9/1388","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/9/1388","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pure.ed.ac.uk:publications/d14ea628-58d2-4ef1-a2ea-373c880845a7","is_oa":true,"landing_page_url":"https://hdl.handle.net/20.500.11820/d14ea628-58d2-4ef1-a2ea-373c880845a7","pdf_url":null,"source":{"id":"https://openalex.org/S4306400321","display_name":"Edinburgh Research Explorer (University of Edinburgh)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I98677209","host_organization_name":"University of Edinburgh","host_organization_lineage":["https://openalex.org/I98677209"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Blomstedt, P, Dutta, R, Seth, S, Brazma, A & Kaski, S 2016, 'Modelling-based experiment retrieval: A case study with gene expression clustering', Bioinformatics, vol. 32, no. 9, pp. 1388-1394. https://doi.org/10.1093/bioinformatics/btv762","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.ed.ac.uk:publications/d14ea628-58d2-4ef1-a2ea-373c880845a7","is_oa":false,"landing_page_url":"https://www.research.ed.ac.uk/en/publications/d14ea628-58d2-4ef1-a2ea-373c880845a7","pdf_url":null,"source":{"id":"https://openalex.org/S4406922455","display_name":"Edinburgh Research Explorer","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:wrap.warwick.ac.uk:114382","is_oa":false,"landing_page_url":"http://wrap.warwick.ac.uk/114382/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400665","display_name":"Warwick Research Archive Portal (University of Warwick)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I39555362","host_organization_name":"University of Warwick","host_organization_lineage":["https://openalex.org/I39555362"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv762","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv762","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/9/1388/49019308/bioinformatics_32_9_1388.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2270582534.pdf"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W1543088395","https://openalex.org/W1544923801","https://openalex.org/W1950791880","https://openalex.org/W1984488680","https://openalex.org/W1987157255","https://openalex.org/W2010007592","https://openalex.org/W2032026767","https://openalex.org/W2053634388","https://openalex.org/W2056780622","https://openalex.org/W2058320302","https://openalex.org/W2068858902","https://openalex.org/W2098230810","https://openalex.org/W2099101879","https://openalex.org/W2101696428","https://openalex.org/W2103129584","https://openalex.org/W2108177546","https://openalex.org/W2121171791","https://openalex.org/W2131659389","https://openalex.org/W2134179844","https://openalex.org/W2146280873","https://openalex.org/W2147018385","https://openalex.org/W2148130205","https://openalex.org/W2150413492","https://openalex.org/W2150926065","https://openalex.org/W2155674449","https://openalex.org/W2157305458","https://openalex.org/W2162833336","https://openalex.org/W2170584976","https://openalex.org/W6658331526","https://openalex.org/W6684050148"],"related_works":["https://openalex.org/W2055243143","https://openalex.org/W2392243736","https://openalex.org/W86652014","https://openalex.org/W4321636575","https://openalex.org/W1986418932","https://openalex.org/W2357796999","https://openalex.org/W2381031055","https://openalex.org/W2366070815","https://openalex.org/W2996519767","https://openalex.org/W4297427155"],"abstract_inverted_index":{"MOTIVATION:":[0],"Public":[1],"and":[2,91,141,223,248],"private":[3],"repositories":[4],"of":[5,25,28,43,64,115,120,152,169,179],"experimental":[6],"data":[7,265],"are":[8,80,266],"growing":[9],"to":[10,56,75,100,225,227],"sizes":[11],"that":[12,171,197],"require":[13],"dedicated":[14],"methods":[15,33,48],"for":[16,34,82,88,184,199],"finding":[17,147],"relevant":[18],"data.":[19],"To":[20,126],"improve":[21],"on":[22],"the":[23,26,41,84,116,121,142,189,200],"state":[24],"art":[27],"keyword":[29],"searches":[30],"from":[31],"annotations,":[32],"content-based":[35],"retrieval":[36,96,110,143,151,185,234],"have":[37],"been":[38],"proposed.":[39],"In":[40],"context":[42],"gene":[44,50,153,231],"expression":[45,51,154,174,232],"experiments,":[46,155],"most":[47],"retrieve":[49,76],"profiles,":[52],"requiring":[53],"each":[54,136],"experiment":[55,137,233],"be":[57,101,205,242],"expressed":[58],"as":[59,104],"a":[60,112,131,158,167,177,229],"single":[61],"profile,":[62],"typically":[63],"case":[65],"versus":[66],"control.":[67],"A":[68],"more":[69],"general,":[70],"recently":[71],"suggested":[72,182],"alternative":[73],"is":[74,138,144,188,220],"experiments":[77],"whose":[78],"models":[79],"good":[81,208],"modelling":[83],"query":[85,93,117],"dataset.":[86],"However,":[87],"very":[89,102],"noisy":[90,103,123],"high-dimensional":[92],"data,":[94],"this":[95,127],"criterion":[97],"turns":[98],"out":[99],"well.":[105],"RESULTS:":[106],"We":[107],"propose":[108],"doing":[109],"using":[111,186,210,244],"denoised":[113],"model":[114,160,203],"dataset,":[118],"instead":[119],"original":[122],"dataset":[124],"itself.":[125],"end,":[128],"we":[129,156],"introduce":[130],"general":[132],"probabilistic":[133,159,202],"framework,":[134],"where":[135],"modelled":[139],"separately":[140],"done":[145],"by":[146],"related":[148],"models.":[149],"For":[150],"use":[157],"called":[161],"product":[162],"partition":[163],"model,":[164],"which":[165],"induces":[166],"clustering":[168,214,246],"genes":[170],"show":[172],"similar":[173],"patterns":[175],"across":[176],"number":[178],"samples.":[180],"The":[181,218,239],"metric":[183],"clusterings":[187],"normalized":[190,249],"information":[191,250],"distance.":[192],"Empirical":[193],"results":[194],"finally":[195],"suggest":[196],"inference":[198],"full":[201],"can":[204,241],"approximated":[206],"with":[207],"performance":[209],"computationally":[211],"faster":[212],"heuristic":[213],"approaches":[215],"(e.g.":[216],"k-means).":[217],"method":[219,240],"highly":[221],"scalable":[222],"straightforward":[224],"apply":[226],"construct":[228],"general-purpose":[230],"method.":[235],"AVAILABILITY":[236],"AND":[237],"IMPLEMENTATION:":[238],"implemented":[243],"standard":[245],"algorithms":[247],"distance,":[251],"available":[252,267],"in":[253],"many":[254],"statistical":[255],"software":[256],"packages.":[257],"CONTACT:":[258],"paul.blomstedt@aalto.fi":[259],"or":[260],"samuel.kaski@aalto.fi":[261],"SUPPLEMENTARY":[262],"INFORMATION:":[263],"Supplementary":[264],"at":[268],"Bioinformatics":[269],"online.":[270]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1}],"updated_date":"2026-07-28T07:46:37.118299","created_date":"2025-10-10T00:00:00"}
