{"id":"https://openalex.org/W2301934630","doi":"https://doi.org/10.1093/bioinformatics/btv739","title":"HitWalker2: visual analytics for precision medicine and beyond","display_name":"HitWalker2: visual analytics for precision medicine and beyond","publication_year":2015,"publication_date":"2015-12-26","ids":{"openalex":"https://openalex.org/W2301934630","doi":"https://doi.org/10.1093/bioinformatics/btv739","mag":"2301934630","pmid":"https://pubmed.ncbi.nlm.nih.gov/26708334"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv739","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv739","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/8/1253/49018473/bioinformatics_32_8_1253.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/8/1253/49018473/bioinformatics_32_8_1253.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061516412","display_name":"Daniel Bottomly","orcid":"https://orcid.org/0000-0001-7191-0990"},"institutions":[{"id":"https://openalex.org/I2801345345","display_name":"Cancer Institute (WIA)","ror":"https://ror.org/01tc10z29","country_code":"IN","type":"healthcare","lineage":["https://openalex.org/I2801345345"]},{"id":"https://openalex.org/I4210107577","display_name":"Oregon Clinic","ror":"https://ror.org/01eadrh05","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210107577"]},{"id":"https://openalex.org/I4390039369","display_name":"OHSU Knight Cancer Institute","ror":"https://ror.org/002shna07","country_code":null,"type":"healthcare","lineage":["https://openalex.org/I165690674","https://openalex.org/I4390039369"]}],"countries":["IN","US"],"is_corresponding":false,"raw_author_name":"Daniel Bottomly","raw_affiliation_strings":["1 Knight Cancer Institute,","2 Oregon Clinical and Translational Research Institute and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Knight Cancer Institute,","institution_ids":["https://openalex.org/I2801345345","https://openalex.org/I4390039369"]},{"raw_affiliation_string":"2 Oregon Clinical and Translational Research Institute and","institution_ids":["https://openalex.org/I4210107577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066373576","display_name":"Shannon K. McWeeney","orcid":"https://orcid.org/0000-0001-8333-6607"},"institutions":[{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]},{"id":"https://openalex.org/I2801345345","display_name":"Cancer Institute (WIA)","ror":"https://ror.org/01tc10z29","country_code":"IN","type":"healthcare","lineage":["https://openalex.org/I2801345345"]},{"id":"https://openalex.org/I4210107577","display_name":"Oregon Clinic","ror":"https://ror.org/01eadrh05","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210107577"]},{"id":"https://openalex.org/I4390039369","display_name":"OHSU Knight Cancer Institute","ror":"https://ror.org/002shna07","country_code":null,"type":"healthcare","lineage":["https://openalex.org/I165690674","https://openalex.org/I4390039369"]}],"countries":["IN","US"],"is_corresponding":false,"raw_author_name":"Shannon K. McWeeney","raw_affiliation_strings":["1 Knight Cancer Institute,","2 Oregon Clinical and Translational Research Institute and","3 Division of Bioinformatics and Computational Biology, Department of Medical Informatics and Clinical Epidemiology, Oregon Health and Science University, Portland OR 97239, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Knight Cancer Institute,","institution_ids":["https://openalex.org/I2801345345","https://openalex.org/I4390039369"]},{"raw_affiliation_string":"2 Oregon Clinical and Translational Research Institute and","institution_ids":["https://openalex.org/I4210107577"]},{"raw_affiliation_string":"3 Division of Bioinformatics and Computational Biology, Department of Medical Informatics and Clinical Epidemiology, Oregon Health and Science University, Portland OR 97239, USA","institution_ids":["https://openalex.org/I165690674"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010834454","display_name":"Beth Wilmot","orcid":"https://orcid.org/0000-0003-3579-3592"},"institutions":[{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]},{"id":"https://openalex.org/I2801345345","display_name":"Cancer Institute (WIA)","ror":"https://ror.org/01tc10z29","country_code":"IN","type":"healthcare","lineage":["https://openalex.org/I2801345345"]},{"id":"https://openalex.org/I4210107577","display_name":"Oregon Clinic","ror":"https://ror.org/01eadrh05","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210107577"]},{"id":"https://openalex.org/I4390039369","display_name":"OHSU Knight Cancer Institute","ror":"https://ror.org/002shna07","country_code":null,"type":"healthcare","lineage":["https://openalex.org/I165690674","https://openalex.org/I4390039369"]}],"countries":["IN","US"],"is_corresponding":true,"raw_author_name":"Beth Wilmot","raw_affiliation_strings":["1 Knight Cancer Institute,","2 Oregon Clinical and Translational Research Institute and","3 Division of Bioinformatics and Computational Biology, Department of Medical Informatics and Clinical Epidemiology, Oregon Health and Science University, Portland OR 97239, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Knight Cancer Institute,","institution_ids":["https://openalex.org/I2801345345","https://openalex.org/I4390039369"]},{"raw_affiliation_string":"2 Oregon Clinical and Translational Research Institute and","institution_ids":["https://openalex.org/I4210107577"]},{"raw_affiliation_string":"3 Division of Bioinformatics and Computational Biology, Department of Medical Informatics and Clinical Epidemiology, Oregon Health and Science University, Portland OR 97239, USA","institution_ids":["https://openalex.org/I165690674"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5010834454"],"corresponding_institution_ids":["https://openalex.org/I165690674","https://openalex.org/I2801345345","https://openalex.org/I4210107577","https://openalex.org/I4390039369"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.1813,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.8392042,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"32","issue":"8","first_page":"1253","last_page":"1255"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.27570000290870667,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.27570000290870667,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.2303999960422516,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.21709999442100525,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/precision-medicine","display_name":"Precision medicine","score":0.7106137871742249},{"id":"https://openalex.org/keywords/visual-analytics","display_name":"Visual analytics","score":0.6885825395584106},{"id":"https://openalex.org/keywords/analytics","display_name":"Analytics","score":0.6821363568305969},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6219670176506042},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.44379252195358276},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.44157660007476807},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.36951279640197754},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3104030191898346},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2541329562664032},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10894948244094849},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.09728866815567017}],"concepts":[{"id":"https://openalex.org/C163763905","wikidata":"https://www.wikidata.org/wiki/Q17075943","display_name":"Precision medicine","level":2,"score":0.7106137871742249},{"id":"https://openalex.org/C59732488","wikidata":"https://www.wikidata.org/wiki/Q2528440","display_name":"Visual analytics","level":3,"score":0.6885825395584106},{"id":"https://openalex.org/C79158427","wikidata":"https://www.wikidata.org/wiki/Q485396","display_name":"Analytics","level":2,"score":0.6821363568305969},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6219670176506042},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.44379252195358276},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.44157660007476807},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.36951279640197754},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3104030191898346},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2541329562664032},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10894948244094849},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.09728866815567017}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btv739","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv739","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/8/1253/49018473/bioinformatics_32_8_1253.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26708334","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26708334","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:3795110","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4824131","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/8/1253","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/8/1253","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv739","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv739","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/8/1253/49018473/bioinformatics_32_8_1253.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.46000000834465027,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G1581679921","display_name":null,"funder_award_id":"P30 CA-069533","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G2268494066","display_name":null,"funder_award_id":"R01-MH099064","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"},{"id":"https://openalex.org/G7998274554","display_name":null,"funder_award_id":"R01 CA192405","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G801436702","display_name":null,"funder_award_id":"UL 1RR024140","funder_id":"https://openalex.org/F4320337375","funder_display_name":"National Center for Research Resources"}],"funders":[{"id":"https://openalex.org/F4320308295","display_name":"Leukemia and Lymphoma Society","ror":"https://ror.org/04m0xav37"},{"id":"https://openalex.org/F4320337346","display_name":"National Institute of Mental Health","ror":"https://ror.org/04xeg9z08"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337375","display_name":"National Center for Research Resources","ror":"https://ror.org/04pw6fb54"},{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2301934630.pdf","grobid_xml":"https://content.openalex.org/works/W2301934630.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W2043398720","https://openalex.org/W2047017978","https://openalex.org/W2092180333","https://openalex.org/W2107580398","https://openalex.org/W2107918164","https://openalex.org/W2110589610","https://openalex.org/W2113613985","https://openalex.org/W2119220491","https://openalex.org/W2132230893","https://openalex.org/W2164298117","https://openalex.org/W4213060373"],"related_works":["https://openalex.org/W2068608913","https://openalex.org/W2362367986","https://openalex.org/W348707231","https://openalex.org/W2064719069","https://openalex.org/W3041760129","https://openalex.org/W4210310791","https://openalex.org/W2062940763","https://openalex.org/W2937343495","https://openalex.org/W4360833258","https://openalex.org/W3048864202"],"abstract_inverted_index":{"UNLABELLED:":[0],"The":[1],"lack":[2],"of":[3,71],"visualization":[4],"frameworks":[5],"to":[6,64],"guide":[7],"interpretation":[8],"and":[9,21,46,52,59,78,91,96,99,109],"facilitate":[10],"discovery":[11],"is":[12,43,86],"a":[13,68],"potential":[14],"bottleneck":[15],"for":[16],"precision":[17],"medicine,":[18],"systems":[19],"genetics":[20],"other":[22],"studies.":[23],"To":[24],"address":[25],"this":[26],"we":[27],"have":[28],"developed":[29],"an":[30],"interactive,":[31],"reproducible,":[32],"web-based":[33],"prioritization":[34,53],"approach":[35],"that":[36],"builds":[37],"on":[38],"our":[39],"earlier":[40],"work.":[41],"HitWalker2":[42],"highly":[44],"flexible":[45],"can":[47],"utilize":[48],"many":[49],"data":[50,58,116],"types":[51],"methods":[54],"based":[55],"upon":[56],"available":[57,88,118,125],"desired":[60],"questions,":[61],"allowing":[62],"it":[63],"be":[65],"utilized":[66],"in":[67],"diverse":[69],"range":[70],"studies":[72],"such":[73],"as":[74],"cancer,":[75],"infectious":[76],"disease":[77],"psychiatric":[79],"disorders.":[80],"AVAILABILITY":[81],"AND":[82],"IMPLEMENTATION:":[83],"Source":[84],"code":[85],"freely":[87],"at":[89,119,126],"https://github.com/biodev/HitWalker2":[90],"implemented":[92],"using":[93],"Python/Django,":[94],"Neo4j":[95],"Javascript":[97],"(D3.js":[98],"jQuery).":[100],"We":[101],"support":[102],"major":[103],"open":[104],"source":[105],"browsers":[106],"(e.g.":[107],"Firefox":[108],"Chromium/Chrome).":[110],"CONTACT:":[111],"wilmotb@ohsu.edu":[112],"SUPPLEMENTARY":[113],"INFORMATION:":[114],"Supplementary":[115],"are":[117,124],"Bioinformatics":[120],"online.":[121],"Additional":[122],"information/instructions":[123],"https://github.com/biodev/HitWalker2/wiki.":[127]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":2},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":1}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
