{"id":"https://openalex.org/W2334399363","doi":"https://doi.org/10.1093/bioinformatics/btv738","title":"OMPPM: online multiple palindrome pattern matching","display_name":"OMPPM: online multiple palindrome pattern matching","publication_year":2015,"publication_date":"2015-12-16","ids":{"openalex":"https://openalex.org/W2334399363","doi":"https://doi.org/10.1093/bioinformatics/btv738","mag":"2334399363","pmid":"https://pubmed.ncbi.nlm.nih.gov/26677963"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv738","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv738","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/8/1151/16921412/btv738.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/8/1151/16921412/btv738.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053793605","display_name":"Hwee Kim","orcid":"https://orcid.org/0000-0001-9915-9756"},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Hwee Kim","raw_affiliation_strings":["Department of Computer Science, Yonsei University, Seoul 120-749, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Yonsei University, Seoul 120-749, Republic of Korea","institution_ids":["https://openalex.org/I193775966"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077698683","display_name":"Yo-Sub Han","orcid":"https://orcid.org/0000-0002-7211-6657"},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Yo-Sub Han","raw_affiliation_strings":["Department of Computer Science, Yonsei University, Seoul 120-749, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Yonsei University, Seoul 120-749, Republic of Korea","institution_ids":["https://openalex.org/I193775966"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5077698683"],"corresponding_institution_ids":["https://openalex.org/I193775966"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.10302657,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"32","issue":"8","first_page":"1151","last_page":"1157"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9222999811172485,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9222999811172485,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.021700000390410423,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12292","display_name":"Graph Theory and Algorithms","score":0.00570000009611249,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/palindrome","display_name":"Palindrome","score":0.7821255326271057},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6914045810699463},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.6647233366966248},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.42154112458229065},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.338336706161499},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21150889992713928},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.20270386338233948},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.1613028645515442},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13204526901245117},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.12457966804504395},{"id":"https://openalex.org/keywords/crispr","display_name":"CRISPR","score":0.06556013226509094}],"concepts":[{"id":"https://openalex.org/C44667518","wikidata":"https://www.wikidata.org/wiki/Q12321","display_name":"Palindrome","level":4,"score":0.7821255326271057},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6914045810699463},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.6647233366966248},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.42154112458229065},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.338336706161499},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21150889992713928},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.20270386338233948},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.1613028645515442},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13204526901245117},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.12457966804504395},{"id":"https://openalex.org/C98108389","wikidata":"https://www.wikidata.org/wiki/Q412563","display_name":"CRISPR","level":3,"score":0.06556013226509094},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055029","descriptor_name":"Inverted Repeat Sequences","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055029","descriptor_name":"Inverted Repeat Sequences","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055029","descriptor_name":"Inverted Repeat Sequences","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btv738","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv738","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/8/1151/16921412/btv738.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26677963","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26677963","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/8/1151","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/8/1151","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv738","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv738","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/8/1151/16921412/btv738.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W938539187","https://openalex.org/W1545666019","https://openalex.org/W1604831130","https://openalex.org/W1967286990","https://openalex.org/W1985108724","https://openalex.org/W1990061958","https://openalex.org/W2002089154","https://openalex.org/W2028903194","https://openalex.org/W2088838668","https://openalex.org/W2089589904","https://openalex.org/W2098376021","https://openalex.org/W2099964107","https://openalex.org/W2100471807","https://openalex.org/W2103704875","https://openalex.org/W2108101601","https://openalex.org/W2109034006","https://openalex.org/W2117575253","https://openalex.org/W2123364539","https://openalex.org/W2156297179","https://openalex.org/W2166706771","https://openalex.org/W2170702273","https://openalex.org/W2174831371","https://openalex.org/W4253759977","https://openalex.org/W4302339081"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2136569355","https://openalex.org/W4214506306","https://openalex.org/W2940487742","https://openalex.org/W4323366524","https://openalex.org/W1980577621","https://openalex.org/W2477304139","https://openalex.org/W1986616196","https://openalex.org/W2619402950","https://openalex.org/W1677680917"],"abstract_inverted_index":{"MOTIVATION:":[0],"A":[1],"palindrome":[2,67,91,119],"is":[3,16,142,150,157,172],"a":[4,51,58],"string":[5],"that":[6,27,71,77],"reads":[7],"the":[8,31,43,47,66,89,109,116,143,151,158],"same":[9,32,44],"forward":[10],"and":[11,57,79,99,114,129,155],"backward.":[12],"Finding":[13],"palindromic":[14],"substructures":[15],"important":[17],"in":[18,95,123],"DNA,":[19],"RNA":[20],"or":[21],"protein":[22],"sequence":[23],"analysis.":[24],"We":[25,86,106],"say":[26],"two":[28],"strings":[29],"of":[30,46,54,61,145,160],"length":[33,45,55,62,154],"are":[34,83,183],"pal-equivalent":[35],"if,":[36],"for":[37,111,169],"each":[38],"possible":[39],"centre,":[40],"they":[41],"have":[42],"maximal":[48],"palindrome.":[49],"Given":[50],"text":[52],"T":[53],"n":[56],"pattern":[59,68,92,120,147,153,161],"P":[60,78],"m,":[63],"we":[64],"study":[65],"matching":[69,93,121],"problem":[70,94,110,122],"finds":[72],"all":[73,146,170],"indices":[74],"i":[75],"such":[76],"[Formula:":[80,124,130,136],"see":[81,125,131,137],"text]":[82,126,132,138],"pal-equivalent.":[84],"RESULTS:":[85],"first":[87],"solve":[88,115],"online":[90,117],"O(m(2))":[96,104],"preprocessing":[97,127],"time":[98,102,128,134],"O(mn)":[100],"query":[101,133],"using":[103,135],"space.":[105],"then":[107],"extend":[108],"multiple":[112,118],"patterns":[113],"space,":[139],"where":[140],"M":[141],"sum":[144],"lengths,":[148],"mk":[149],"longest":[152],"c":[156],"number":[159],"occurrences.":[162],"AVAILABILITY":[163],"AND":[164],"IMPLEMENTATION:":[165],"The":[166],"source":[167],"code":[168],"algorithms":[171],"freely":[173],"available":[174,184],"at":[175,185],"http://toc.yonsei.ac.kr/OMPPM":[176],"CONTACT:":[177],"kimhwee@cs.yonsei.ac.kr":[178],"SUPPLEMENTARY":[179],"INFORMATION:":[180],"Supplementary":[181],"data":[182],"Bioinformatics":[186],"online.":[187]},"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2025-10-10T00:00:00"}
