{"id":"https://openalex.org/W2213580165","doi":"https://doi.org/10.1093/bioinformatics/btv729","title":"Computational identification of piRNA targets on mouse mRNAs","display_name":"Computational identification of piRNA targets on mouse mRNAs","publication_year":2015,"publication_date":"2015-12-16","ids":{"openalex":"https://openalex.org/W2213580165","doi":"https://doi.org/10.1093/bioinformatics/btv729","mag":"2213580165","pmid":"https://pubmed.ncbi.nlm.nih.gov/26677964"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv729","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv729","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/8/1170/49018797/bioinformatics_32_8_1170.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/8/1170/49018797/bioinformatics_32_8_1170.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039714756","display_name":"Jiao Yuan","orcid":"https://orcid.org/0000-0003-2597-2319"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210112540","display_name":"Institute of Biophysics","ror":"https://ror.org/01tyv8576","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112540"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jiao Yuan","raw_affiliation_strings":["1 Key Laboratory of the Zoological Systematics and Evolution, Institute of Zoology and","2 CAS Key Laboratory of Rna Biology, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China"],"affiliations":[{"raw_affiliation_string":"1 Key Laboratory of the Zoological Systematics and Evolution, Institute of Zoology and","institution_ids":[]},{"raw_affiliation_string":"2 CAS Key Laboratory of Rna Biology, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China","institution_ids":["https://openalex.org/I4210112540","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100364059","display_name":"Peng Zhang","orcid":"https://orcid.org/0000-0001-9303-1639"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Peng Zhang","raw_affiliation_strings":["1 Key Laboratory of the Zoological Systematics and Evolution, Institute of Zoology and"],"affiliations":[{"raw_affiliation_string":"1 Key Laboratory of the Zoological Systematics and Evolution, Institute of Zoology and","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053000157","display_name":"Ya Cui","orcid":"https://orcid.org/0000-0003-1574-0928"},"institutions":[{"id":"https://openalex.org/I4210112540","display_name":"Institute of Biophysics","ror":"https://ror.org/01tyv8576","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112540"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ya Cui","raw_affiliation_strings":["2 CAS Key Laboratory of Rna Biology, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China"],"affiliations":[{"raw_affiliation_string":"2 CAS Key Laboratory of Rna Biology, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China","institution_ids":["https://openalex.org/I4210112540","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100394312","display_name":"Jiajia Wang","orcid":"https://orcid.org/0000-0002-0554-1354"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jiajia Wang","raw_affiliation_strings":["1 Key Laboratory of the Zoological Systematics and Evolution, Institute of Zoology and"],"affiliations":[{"raw_affiliation_string":"1 Key Laboratory of the Zoological Systematics and Evolution, Institute of Zoology and","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038748495","display_name":"Geir Skogerb\u00f8","orcid":null},"institutions":[{"id":"https://openalex.org/I4210112540","display_name":"Institute of Biophysics","ror":"https://ror.org/01tyv8576","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112540"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Geir Skogerb\u00f8","raw_affiliation_strings":["2 CAS Key Laboratory of Rna Biology, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China"],"affiliations":[{"raw_affiliation_string":"2 CAS Key Laboratory of Rna Biology, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China","institution_ids":["https://openalex.org/I4210112540","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101908661","display_name":"Da-Wei Huang","orcid":"https://orcid.org/0000-0003-0863-7535"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Da-Wei Huang","raw_affiliation_strings":["1 Key Laboratory of the Zoological Systematics and Evolution, Institute of Zoology and"],"affiliations":[{"raw_affiliation_string":"1 Key Laboratory of the Zoological Systematics and Evolution, Institute of Zoology and","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029900952","display_name":"Runsheng Chen","orcid":"https://orcid.org/0000-0001-6049-8347"},"institutions":[{"id":"https://openalex.org/I4210112540","display_name":"Institute of Biophysics","ror":"https://ror.org/01tyv8576","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112540"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Runsheng Chen","raw_affiliation_strings":["2 CAS Key Laboratory of Rna Biology, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China"],"affiliations":[{"raw_affiliation_string":"2 CAS Key Laboratory of Rna Biology, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China","institution_ids":["https://openalex.org/I4210112540","https://openalex.org/I19820366"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002270726","display_name":"Shunmin He","orcid":"https://orcid.org/0000-0002-7294-0865"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Shunmin He","raw_affiliation_strings":["1 Key Laboratory of the Zoological Systematics and Evolution, Institute of Zoology and"],"affiliations":[{"raw_affiliation_string":"1 Key Laboratory of the Zoological Systematics and Evolution, Institute of Zoology and","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5039714756"],"corresponding_institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210112540"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.0232,"has_fulltext":true,"cited_by_count":30,"citation_normalized_percentile":{"value":0.88672832,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"32","issue":"8","first_page":"1170","last_page":"1177"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/piwi-interacting-rna","display_name":"Piwi-interacting RNA","score":0.9722689986228943},{"id":"https://openalex.org/keywords/transposable-element","display_name":"Transposable element","score":0.708008348941803},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6632752418518066},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5578537583351135},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5293812155723572},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5125298500061035},{"id":"https://openalex.org/keywords/gene-silencing","display_name":"Gene silencing","score":0.5105017423629761},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.3538098931312561}],"concepts":[{"id":"https://openalex.org/C147724379","wikidata":"https://www.wikidata.org/wiki/Q2367421","display_name":"Piwi-interacting RNA","level":5,"score":0.9722689986228943},{"id":"https://openalex.org/C4918238","wikidata":"https://www.wikidata.org/wiki/Q121438","display_name":"Transposable element","level":4,"score":0.708008348941803},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6632752418518066},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5578537583351135},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5293812155723572},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5125298500061035},{"id":"https://openalex.org/C119056186","wikidata":"https://www.wikidata.org/wiki/Q1431332","display_name":"Gene silencing","level":3,"score":0.5105017423629761},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.3538098931312561}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004251","descriptor_name":"DNA Transposable Elements","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004251","descriptor_name":"DNA Transposable Elements","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004251","descriptor_name":"DNA Transposable Elements","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D034741","descriptor_name":"RNA, Small Interfering","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D034741","descriptor_name":"RNA, Small Interfering","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D034741","descriptor_name":"RNA, Small Interfering","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btv729","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv729","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/8/1170/49018797/bioinformatics_32_8_1170.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26677964","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26677964","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/8/1170","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/8/1170","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv729","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv729","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/8/1170/49018797/bioinformatics_32_8_1170.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2213580165.pdf","grobid_xml":"https://content.openalex.org/works/W2213580165.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W1511345757","https://openalex.org/W1596971406","https://openalex.org/W1659482056","https://openalex.org/W1972353480","https://openalex.org/W1987752798","https://openalex.org/W2013163897","https://openalex.org/W2019346039","https://openalex.org/W2020441317","https://openalex.org/W2039684583","https://openalex.org/W2042160423","https://openalex.org/W2044545834","https://openalex.org/W2046318418","https://openalex.org/W2051381803","https://openalex.org/W2072795057","https://openalex.org/W2077879161","https://openalex.org/W2085421027","https://openalex.org/W2087347434","https://openalex.org/W2089971639","https://openalex.org/W2096561521","https://openalex.org/W2105624980","https://openalex.org/W2107961632","https://openalex.org/W2111255623","https://openalex.org/W2117581400","https://openalex.org/W2118420574","https://openalex.org/W2124985265","https://openalex.org/W2125155400","https://openalex.org/W2126311929","https://openalex.org/W2130525868","https://openalex.org/W2132102978","https://openalex.org/W2135292509","https://openalex.org/W2136430672","https://openalex.org/W2146339022","https://openalex.org/W2148105495","https://openalex.org/W2152326079","https://openalex.org/W2157009395","https://openalex.org/W2168074036","https://openalex.org/W2168585378","https://openalex.org/W2582743722"],"related_works":["https://openalex.org/W2614530865","https://openalex.org/W2127735954","https://openalex.org/W4312115597","https://openalex.org/W4321788553","https://openalex.org/W3200446566","https://openalex.org/W1927614236","https://openalex.org/W1858495790","https://openalex.org/W2164636227","https://openalex.org/W2768062840","https://openalex.org/W2529437247"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":4}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
