{"id":"https://openalex.org/W2210029275","doi":"https://doi.org/10.1093/bioinformatics/btv728","title":"SpotCaliper: fast wavelet-based spot detection with accurate size estimation","display_name":"SpotCaliper: fast wavelet-based spot detection with accurate size estimation","publication_year":2015,"publication_date":"2015-12-10","ids":{"openalex":"https://openalex.org/W2210029275","doi":"https://doi.org/10.1093/bioinformatics/btv728","mag":"2210029275","pmid":"https://pubmed.ncbi.nlm.nih.gov/26656569"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv728","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv728","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/8/1278/16921095/btv728.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/8/1278/16921095/btv728.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043999950","display_name":"Zsuzsanna P\u00fcsp\u00f6ki","orcid":"https://orcid.org/0000-0002-1807-9525"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Zsuzsanna P\u00fcsp\u00f6ki","raw_affiliation_strings":["Biomedical Imaging Group, \u00c9cole polytechnique f\u00e9d\u00e9rale de Lausanne (EPFL), Lausanne CH-1015, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomedical Imaging Group, \u00c9cole polytechnique f\u00e9d\u00e9rale de Lausanne (EPFL), Lausanne CH-1015, Switzerland","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019987836","display_name":"Daniel Sage","orcid":"https://orcid.org/0000-0002-1150-1623"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Daniel Sage","raw_affiliation_strings":["Biomedical Imaging Group, \u00c9cole polytechnique f\u00e9d\u00e9rale de Lausanne (EPFL), Lausanne CH-1015, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomedical Imaging Group, \u00c9cole polytechnique f\u00e9d\u00e9rale de Lausanne (EPFL), Lausanne CH-1015, Switzerland","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038321378","display_name":"John Paul Ward","orcid":"https://orcid.org/0000-0003-0289-117X"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"John Paul Ward","raw_affiliation_strings":["Biomedical Imaging Group, \u00c9cole polytechnique f\u00e9d\u00e9rale de Lausanne (EPFL), Lausanne CH-1015, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomedical Imaging Group, \u00c9cole polytechnique f\u00e9d\u00e9rale de Lausanne (EPFL), Lausanne CH-1015, Switzerland","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027830035","display_name":"Micha\u00ebl Unser","orcid":"https://orcid.org/0000-0003-1248-2513"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Michael Unser","raw_affiliation_strings":["Biomedical Imaging Group, \u00c9cole polytechnique f\u00e9d\u00e9rale de Lausanne (EPFL), Lausanne CH-1015, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomedical Imaging Group, \u00c9cole polytechnique f\u00e9d\u00e9rale de Lausanne (EPFL), Lausanne CH-1015, Switzerland","institution_ids":["https://openalex.org/I5124864"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I5124864"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.7717,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.8366005,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"32","issue":"8","first_page":"1278","last_page":"1280"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.6459000110626221,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.6459000110626221,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.057500001043081284,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.03420000150799751,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7768045663833618},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.7451670169830322},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.7066656947135925},{"id":"https://openalex.org/keywords/wavelet","display_name":"Wavelet","score":0.5925028920173645},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.470661997795105},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4555484354496002},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.43540748953819275},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.39846929907798767}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7768045663833618},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.7451670169830322},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.7066656947135925},{"id":"https://openalex.org/C47432892","wikidata":"https://www.wikidata.org/wiki/Q831390","display_name":"Wavelet","level":2,"score":0.5925028920173645},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.470661997795105},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4555484354496002},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.43540748953819275},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.39846929907798767},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/btv728","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv728","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/8/1278/16921095/btv728.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26656569","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26656569","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:stars.library.ucf.edu:scopus2015-3639","is_oa":true,"landing_page_url":"https://stars.library.ucf.edu/scopus2015/2640","pdf_url":null,"source":{"id":"https://openalex.org/S4210172555","display_name":"Journal of International Crisis and Risk Communication Research","issn_l":"2576-0017","issn":["2576-0017","2576-0025"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Scopus Export 2015-2019","raw_type":"text"},{"id":"pmh:oai:doc.rero.ch:331973","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400148","display_name":"reroDoc Digital Library","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null},{"id":"pmh:oai:infoscience.epfl.ch:220940","is_oa":true,"landing_page_url":"http://infoscience.epfl.ch/record/220940","pdf_url":null,"source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/8/1278","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/8/1278","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv728","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv728","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/8/1278/16921095/btv728.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3829048491","display_name":null,"funder_award_id":"FP7/2007-2013","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5593277320","display_name":null,"funder_award_id":"2007-2013","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5702163051","display_name":null,"funder_award_id":"FP7/2007","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8353565506","display_name":"A functional framework for sparse, non-gaussian signal processing and bioimaging","funder_award_id":"267439","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321942","display_name":"Hasler Stiftung","ror":"https://ror.org/04m3t9183"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2210029275.pdf","grobid_xml":"https://content.openalex.org/works/W2210029275.grobid-xml"},"referenced_works_count":8,"referenced_works":["https://openalex.org/W118803141","https://openalex.org/W1995583822","https://openalex.org/W2062024414","https://openalex.org/W2109200236","https://openalex.org/W2109684694","https://openalex.org/W2294871602","https://openalex.org/W3106213621","https://openalex.org/W4255272544"],"related_works":["https://openalex.org/W4287378204","https://openalex.org/W2981957539","https://openalex.org/W47352601","https://openalex.org/W2545422590","https://openalex.org/W4240705470","https://openalex.org/W2945311252","https://openalex.org/W631546281","https://openalex.org/W4213354039","https://openalex.org/W2266220644","https://openalex.org/W88292646"],"abstract_inverted_index":{"MOTIVATION:":[0],"SpotCaliper":[1],"is":[2,27,40,88],"a":[3,9,34,51,98],"novel":[4],"wavelet-based":[5],"image-analysis":[6],"software":[7,87],"providing":[8],"fast":[10,99],"automatic":[11],"detection":[12],"scheme":[13],"for":[14,56],"circular":[15],"patterns":[16],"(spots),":[17],"combined":[18],"with":[19,33],"the":[20,44,48,63,66,72,86,93],"precise":[21],"estimation":[22],"of":[23,62,68,85,95],"their":[24],"size.":[25],"It":[26],"implemented":[28],"as":[29,75,77],"an":[30],"ImageJ":[31],"plugin":[32],"friendly":[35],"user":[36,39],"interface.":[37],"The":[38,59,82],"allowed":[41],"to":[42,91],"edit":[43],"results":[45],"by":[46],"modifying":[47],"measurements":[49],"(in":[50],"semi-automated":[52],"way),":[53],"extract":[54],"data":[55,112],"further":[57,79],"analysis.":[58],"fine":[60],"tuning":[61],"detections":[64],"includes":[65],"possibility":[67],"adjusting":[69],"or":[70],"removing":[71],"original":[73],"detections,":[74],"well":[76],"adding":[78],"spots.":[80],"RESULTS:":[81],"main":[83],"advantage":[84],"its":[89],"ability":[90],"capture":[92],"size":[94],"spots":[96],"in":[97],"and":[100],"accurate":[101],"way.":[102],"AVAILABILITY":[103],"AND":[104],"IMPLEMENTATION:":[105],"http://bigwww.epfl.ch/algorithms/spotcaliper/":[106],"CONTACT:":[107],"zsuzsanna.puspoki@epfl.ch":[108],"SUPPLEMENTARY":[109],"INFORMATION:":[110],"Supplementary":[111],"are":[113],"available":[114],"at":[115],"Bioinformatics":[116],"online.":[117]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
