{"id":"https://openalex.org/W2309012913","doi":"https://doi.org/10.1093/bioinformatics/btv727","title":"VIRALpro: a tool to identify viral capsid and tail sequences","display_name":"VIRALpro: a tool to identify viral capsid and tail sequences","publication_year":2016,"publication_date":"2016-01-05","ids":{"openalex":"https://openalex.org/W2309012913","doi":"https://doi.org/10.1093/bioinformatics/btv727","mag":"2309012913","pmid":"https://pubmed.ncbi.nlm.nih.gov/26733451"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv727","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv727","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/9/1405/24343069/btv727.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/9/1405/24343069/btv727.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065367548","display_name":"Clovis Galiez","orcid":"https://orcid.org/0000-0002-0560-6023"},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210133778","display_name":"Centre Inria de l'Universit\u00e9 de Rennes","ror":"https://ror.org/04040yw90","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1326498283","https://openalex.org/I4210133778"]},{"id":"https://openalex.org/I4405260663","display_name":"DYLISS: Dynamics, Logics and Inference for biological Systems and Sequences","ror":"https://ror.org/043ja9593","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210133778","https://openalex.org/I4210159245","https://openalex.org/I4405260663","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I56067802","display_name":"Universit\u00e9 de Rennes","ror":"https://ror.org/015m7wh34","country_code":"FR","type":"education","lineage":["https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Clovis Galiez","raw_affiliation_strings":["1 INRIA, Campus De Beaulieu, Rennes Cedex, 35042, France","Dyliss - Dynamics, Logics and Inference for biological Systems and Sequences (Campus de Beaulieu 35042 Rennes cedex - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 INRIA, Campus De Beaulieu, Rennes Cedex, 35042, France","institution_ids":["https://openalex.org/I1326498283","https://openalex.org/I4210133778","https://openalex.org/I56067802"]},{"raw_affiliation_string":"Dyliss - Dynamics, Logics and Inference for biological Systems and Sequences (Campus de Beaulieu 35042 Rennes cedex - France)","institution_ids":["https://openalex.org/I4405260663"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085024037","display_name":"Chr\u0300istophe Magnan","orcid":"https://orcid.org/0000-0002-7044-2571"},"institutions":[{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]},{"id":"https://openalex.org/I4210140791","display_name":"Irvine University","ror":"https://ror.org/04ysmca02","country_code":"US","type":"education","lineage":["https://openalex.org/I4210140791"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christophe N. Magnan","raw_affiliation_strings":["2 Department of Computer Science and Institute for Genomics and Bioinformatics, University of California, Irvine, Irvine, CA 92697, USA","Department of computer science [Irvine] (University of California, Irvine Department of Computer Science Donald Bren School of Information and Computer Sciences 3019 Donald Bren Hall Irvine, CA 92697-3435 - United States)","Institute for Genomics and Bioinformatics [Irvine] (Info & Computer Science Building 2\r\nUniversity of California, Irvine\r\nCalifornia, Irvine 92697-3445 - United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2 Department of Computer Science and Institute for Genomics and Bioinformatics, University of California, Irvine, Irvine, CA 92697, USA","institution_ids":["https://openalex.org/I204250578"]},{"raw_affiliation_string":"Department of computer science [Irvine] (University of California, Irvine Department of Computer Science Donald Bren School of Information and Computer Sciences 3019 Donald Bren Hall Irvine, CA 92697-3435 - United States)","institution_ids":["https://openalex.org/I204250578","https://openalex.org/I4210140791"]},{"raw_affiliation_string":"Institute for Genomics and Bioinformatics [Irvine] (Info & Computer Science Building 2\r\nUniversity of California, Irvine\r\nCalifornia, Irvine 92697-3445 - United States)","institution_ids":["https://openalex.org/I204250578"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055528856","display_name":"F Coste","orcid":"https://orcid.org/0000-0001-9134-6557"},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210133778","display_name":"Centre Inria de l'Universit\u00e9 de Rennes","ror":"https://ror.org/04040yw90","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1326498283","https://openalex.org/I4210133778"]},{"id":"https://openalex.org/I4405260663","display_name":"DYLISS: Dynamics, Logics and Inference for biological Systems and Sequences","ror":"https://ror.org/043ja9593","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210133778","https://openalex.org/I4210159245","https://openalex.org/I4405260663","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I56067802","display_name":"Universit\u00e9 de Rennes","ror":"https://ror.org/015m7wh34","country_code":"FR","type":"education","lineage":["https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Francois Coste","raw_affiliation_strings":["1 INRIA, Campus De Beaulieu, Rennes Cedex, 35042, France","Dyliss - Dynamics, Logics and Inference for biological Systems and Sequences (Campus de Beaulieu 35042 Rennes cedex - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 INRIA, Campus De Beaulieu, Rennes Cedex, 35042, France","institution_ids":["https://openalex.org/I1326498283","https://openalex.org/I4210133778","https://openalex.org/I56067802"]},{"raw_affiliation_string":"Dyliss - Dynamics, Logics and Inference for biological Systems and Sequences (Campus de Beaulieu 35042 Rennes cedex - France)","institution_ids":["https://openalex.org/I4405260663"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088813478","display_name":"Pierre Baldi","orcid":"https://orcid.org/0000-0001-8752-4664"},"institutions":[{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]},{"id":"https://openalex.org/I4210140791","display_name":"Irvine University","ror":"https://ror.org/04ysmca02","country_code":"US","type":"education","lineage":["https://openalex.org/I4210140791"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Pierre Baldi","raw_affiliation_strings":["2 Department of Computer Science and Institute for Genomics and Bioinformatics, University of California, Irvine, Irvine, CA 92697, USA","Department of computer science [Irvine] (University of California, Irvine Department of Computer Science Donald Bren School of Information and Computer Sciences 3019 Donald Bren Hall Irvine, CA 92697-3435 - United States)","Institute for Genomics and Bioinformatics [Irvine] (Info & Computer Science Building 2\r\nUniversity of California, Irvine\r\nCalifornia, Irvine 92697-3445 - United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2 Department of Computer Science and Institute for Genomics and Bioinformatics, University of California, Irvine, Irvine, CA 92697, USA","institution_ids":["https://openalex.org/I204250578"]},{"raw_affiliation_string":"Department of computer science [Irvine] (University of California, Irvine Department of Computer Science Donald Bren School of Information and Computer Sciences 3019 Donald Bren Hall Irvine, CA 92697-3435 - United States)","institution_ids":["https://openalex.org/I204250578","https://openalex.org/I4210140791"]},{"raw_affiliation_string":"Institute for Genomics and Bioinformatics [Irvine] (Info & Computer Science Building 2\r\nUniversity of California, Irvine\r\nCalifornia, Irvine 92697-3445 - United States)","institution_ids":["https://openalex.org/I204250578"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5065367548","https://openalex.org/A5088813478"],"corresponding_institution_ids":["https://openalex.org/I1326498283","https://openalex.org/I204250578","https://openalex.org/I4210133778","https://openalex.org/I4210140791","https://openalex.org/I4405260663","https://openalex.org/I56067802"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.394,"has_fulltext":false,"cited_by_count":24,"citation_normalized_percentile":{"value":0.80924105,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"32","issue":"9","first_page":"1405","last_page":"1407"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.5720999836921692,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.5720999836921692,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.0835999995470047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11495","display_name":"Animal Virus Infections Studies","score":0.0803999975323677,"subfield":{"id":"https://openalex.org/subfields/1103","display_name":"Animal Science and Zoology"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.8479832410812378},{"id":"https://openalex.org/keywords/capsid","display_name":"Capsid","score":0.7075643539428711},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5244429707527161},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.5123132467269897},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.47405025362968445},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4670374095439911},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4543038308620453},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.44763147830963135},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.4405522346496582},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.43859803676605225},{"id":"https://openalex.org/keywords/software-suite","display_name":"Software suite","score":0.41122910380363464},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.23495906591415405},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20864039659500122},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.17041239142417908},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13348358869552612},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.0810239315032959},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.06736359000205994}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.8479832410812378},{"id":"https://openalex.org/C202878990","wikidata":"https://www.wikidata.org/wiki/Q830465","display_name":"Capsid","level":3,"score":0.7075643539428711},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5244429707527161},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.5123132467269897},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.47405025362968445},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4670374095439911},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4543038308620453},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.44763147830963135},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.4405522346496582},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.43859803676605225},{"id":"https://openalex.org/C2778736646","wikidata":"https://www.wikidata.org/wiki/Q1143070","display_name":"Software suite","level":3,"score":0.41122910380363464},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.23495906591415405},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20864039659500122},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.17041239142417908},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13348358869552612},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0810239315032959},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.06736359000205994},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002213","descriptor_name":"Capsid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002213","descriptor_name":"Capsid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002213","descriptor_name":"Capsid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002213","descriptor_name":"Capsid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1093/bioinformatics/btv727","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv727","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/9/1405/24343069/btv727.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26733451","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26733451","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:4775854","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5860506","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:ark:/13030/qt5b4871c8","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:HAL:hal-01242251v1","is_oa":false,"landing_page_url":"https://hal.science/hal-01242251","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2016, &#x27E8;10.1093/bioinformatics/btv727&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:escholarship.org:ark:/13030/qt5b4871c8","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/5b4871c8","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, vol 32, iss 9","raw_type":"article"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/9/1405","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/9/1405","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv727","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv727","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/9/1405/24343069/btv727.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4300000071525574,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2309012913.pdf"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W1552724685","https://openalex.org/W1552767446","https://openalex.org/W1968872877","https://openalex.org/W1980571326","https://openalex.org/W2016519966","https://openalex.org/W2074955520","https://openalex.org/W2130253098","https://openalex.org/W2131474431","https://openalex.org/W2137597742","https://openalex.org/W2149590679","https://openalex.org/W2153635508","https://openalex.org/W2521298622","https://openalex.org/W2599544034","https://openalex.org/W3145289798","https://openalex.org/W4285719527","https://openalex.org/W6632992187"],"related_works":["https://openalex.org/W1516095885","https://openalex.org/W2158573927","https://openalex.org/W4231704780","https://openalex.org/W2108921801","https://openalex.org/W4206079007","https://openalex.org/W2398058485","https://openalex.org/W254965819","https://openalex.org/W4205365843","https://openalex.org/W3156231268","https://openalex.org/W3101967630"],"abstract_inverted_index":{"MOTIVATION:":[0],"Not":[1],"only":[2],"sequence":[3,73],"data":[4,106],"continue":[5],"to":[6],"outpace":[7],"annotation":[8,23,74],"information,":[9],"but":[10],"also":[11],"the":[12,22,27,69,96],"problem":[13],"is":[14,26,40],"further":[15],"exacerbated":[16],"when":[17],"organisms":[18],"are":[19,68,89,107],"underrepresented":[20],"in":[21,35],"databases.":[24],"This":[25],"case":[28],"with":[29],"non-human-pathogenic":[30],"viruses":[31],"which":[32,67],"occur":[33],"frequently":[34],"metagenomic":[36],"projects.":[37],"Thus,":[38],"there":[39],"a":[41,56],"need":[42],"for":[43,60],"tools":[44],"capable":[45],"of":[46,95],"detecting":[47],"and":[48,63,75,85],"classifying":[49],"viral":[50,72,76],"sequences.":[51],"RESULTS:":[52],"We":[53],"describe":[54],"VIRALpro":[55],"new":[57],"effective":[58],"tool":[59],"identifying":[61],"capsid":[62],"tail":[64],"protein":[65],"sequences,":[66],"cornerstones":[70],"toward":[71],"genome":[77],"classification.":[78],"AVAILABILITY":[79],"AND":[80],"IMPLEMENTATION:":[81],"The":[82],"data,":[83],"software":[84],"corresponding":[86],"web":[87],"server":[88],"available":[90,108],"from":[91],"http://scratch.proteomics.ics.uci.edu":[92],"as":[93],"part":[94],"SCRATCH":[97],"suite.":[98],"CONTACT:":[99],"clovis.galiez@inria.fr":[100],"or":[101],"pfbaldi@uci.edu":[102],"SUPPLEMENTARY":[103],"INFORMATION:":[104],"Supplementary":[105],"at":[109],"Bioinformatics":[110],"online.":[111]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2016,"cited_by_count":1}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
