{"id":"https://openalex.org/W2261944919","doi":"https://doi.org/10.1093/bioinformatics/btv723","title":"PharmacoGx: an R package for analysis of large pharmacogenomic datasets","display_name":"PharmacoGx: an R package for analysis of large pharmacogenomic datasets","publication_year":2015,"publication_date":"2015-12-09","ids":{"openalex":"https://openalex.org/W2261944919","doi":"https://doi.org/10.1093/bioinformatics/btv723","mag":"2261944919","pmid":"https://pubmed.ncbi.nlm.nih.gov/26656004"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv723","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv723","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/8/1244/49018359/bioinformatics_32_8_1244.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/8/1244/49018359/bioinformatics_32_8_1244.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066881174","display_name":"Petr Smirnov","orcid":"https://orcid.org/0000-0001-9395-8450"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Petr Smirnov","raw_affiliation_strings":["1 Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada,","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088177470","display_name":"Zhaleh Safikhani","orcid":"https://orcid.org/0000-0002-1429-1692"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Zhaleh Safikhani","raw_affiliation_strings":["1 Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada,","2 Department of Medical Biophysics, University of Toronto, Toronto, ON, Canada,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada,","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]},{"raw_affiliation_string":"2 Department of Medical Biophysics, University of Toronto, Toronto, ON, Canada,","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090035556","display_name":"Nehm\u00e9 El-Hachem","orcid":"https://orcid.org/0000-0002-5778-5342"},"institutions":[{"id":"https://openalex.org/I4210158752","display_name":"Montreal Clinical Research Institute","ror":"https://ror.org/05m8pzq90","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210158752","https://openalex.org/I70931966"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Nehme El-Hachem","raw_affiliation_strings":["3 Institut De Recherches Cliniques De Montr\u00e9al, Montreal, QC, Canada,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"3 Institut De Recherches Cliniques De Montr\u00e9al, Montreal, QC, Canada,","institution_ids":["https://openalex.org/I4210158752"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100391422","display_name":"Dong Wang","orcid":"https://orcid.org/0000-0001-7877-7440"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Dong Wang","raw_affiliation_strings":["1 Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada,","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011245263","display_name":"Adrian She","orcid":null},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Adrian She","raw_affiliation_strings":["1 Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada,","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058483070","display_name":"Catharina Olsen","orcid":"https://orcid.org/0000-0002-6193-2296"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Catharina Olsen","raw_affiliation_strings":["1 Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada,","2 Department of Medical Biophysics, University of Toronto, Toronto, ON, Canada,","4 Interuniversity Institute of Bioinformatics in Brussels (IB)2, Brussels, Belgium,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada,","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]},{"raw_affiliation_string":"2 Department of Medical Biophysics, University of Toronto, Toronto, ON, Canada,","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"4 Interuniversity Institute of Bioinformatics in Brussels (IB)2, Brussels, Belgium,","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053145844","display_name":"Mark Freeman","orcid":"https://orcid.org/0000-0003-4521-2720"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Mark Freeman","raw_affiliation_strings":["1 Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada,","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108500338","display_name":"Heather M. Selby","orcid":null},"institutions":[{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210117453","display_name":"Dana-Farber Cancer Institute","ror":"https://ror.org/02jzgtq86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210117453"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Heather Selby","raw_affiliation_strings":["6 Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, USA,","7 Department of Bioinformatics, Boston University, Boston, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"6 Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, USA,","institution_ids":["https://openalex.org/I136199984","https://openalex.org/I4210117453"]},{"raw_affiliation_string":"7 Department of Bioinformatics, Boston University, Boston, MA, USA","institution_ids":["https://openalex.org/I111088046"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046072860","display_name":"Deena M.A. Gendoo","orcid":"https://orcid.org/0000-0001-8891-4138"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Deena M.A. Gendoo","raw_affiliation_strings":["1 Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada,","2 Department of Medical Biophysics, University of Toronto, Toronto, ON, Canada,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada,","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]},{"raw_affiliation_string":"2 Department of Medical Biophysics, University of Toronto, Toronto, ON, Canada,","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062210537","display_name":"Patrick Gro\u00dfmann","orcid":null},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210117453","display_name":"Dana-Farber Cancer Institute","ror":"https://ror.org/02jzgtq86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210117453"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Patrick Grossmann","raw_affiliation_strings":["6 Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"6 Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, USA,","institution_ids":["https://openalex.org/I136199984","https://openalex.org/I4210117453"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102809628","display_name":"Andrew H. Beck","orcid":"https://orcid.org/0000-0002-9978-134X"},"institutions":[{"id":"https://openalex.org/I1316535847","display_name":"Beth Israel Deaconess Medical Center","ror":"https://ror.org/04drvxt59","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1316535847"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew H. Beck","raw_affiliation_strings":["8 Beth Israel Deaconess Medical Center, Boston, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"8 Beth Israel Deaconess Medical Center, Boston, MA, USA","institution_ids":["https://openalex.org/I1316535847"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001452511","display_name":"Hugo J.W.L. Aerts","orcid":"https://orcid.org/0000-0002-2122-2003"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210117453","display_name":"Dana-Farber Cancer Institute","ror":"https://ror.org/02jzgtq86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210117453"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hugo J.W.L. Aerts","raw_affiliation_strings":["6 Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"6 Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, USA,","institution_ids":["https://openalex.org/I136199984","https://openalex.org/I4210117453"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004938979","display_name":"Mathieu Lupien","orcid":"https://orcid.org/0000-0003-0929-9478"},"institutions":[{"id":"https://openalex.org/I112260969","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54","country_code":"CA","type":"funder","lineage":["https://openalex.org/I112260969"]},{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]},{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]},{"id":"https://openalex.org/I4210090991","display_name":"Institute of Cancer Research","ror":"https://ror.org/00dpztj76","country_code":"CA","type":"facility","lineage":["https://openalex.org/I176337269","https://openalex.org/I4210090991"]}],"countries":["BE","CA"],"is_corresponding":false,"raw_author_name":"Mathieu Lupien","raw_affiliation_strings":["1 Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada,","2 \u00a05Machine Learning Group (MLG), Department d\u2019Informatique, Universit\u00e9 libre de Bruxelles (ULB), Brussels, Belgium,","9 Ontario Institute of Cancer Research, Toronto, ON, Canada,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada,","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]},{"raw_affiliation_string":"2 \u00a05Machine Learning Group (MLG), Department d\u2019Informatique, Universit\u00e9 libre de Bruxelles (ULB), Brussels, Belgium,","institution_ids":["https://openalex.org/I132053463"]},{"raw_affiliation_string":"9 Ontario Institute of Cancer Research, Toronto, ON, Canada,","institution_ids":["https://openalex.org/I112260969","https://openalex.org/I4210090991"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087983309","display_name":"Anna Goldenberg","orcid":"https://orcid.org/0000-0002-2416-833X"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I2801317318","display_name":"Hospital for Sick Children","ror":"https://ror.org/057q4rt57","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I2801317318"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Anna Goldenberg","raw_affiliation_strings":["10 Hospital for Sick Children, Toronto, ON, Canada and","11 Department of Computer Science, University of Toronto, Toronto, ON, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"10 Hospital for Sick Children, Toronto, ON, Canada and","institution_ids":["https://openalex.org/I2801317318"]},{"raw_affiliation_string":"11 Department of Computer Science, University of Toronto, Toronto, ON, Canada","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010487226","display_name":"Benjamin Haibe\u2010Kains","orcid":"https://orcid.org/0000-0002-7684-0079"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Benjamin Haibe-Kains","raw_affiliation_strings":["1 Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada,","2 Department of Medical Biophysics, University of Toronto, Toronto, ON, Canada,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada,","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]},{"raw_affiliation_string":"2 Department of Medical Biophysics, University of Toronto, Toronto, ON, Canada,","institution_ids":["https://openalex.org/I185261750"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5010487226"],"corresponding_institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I185261750","https://openalex.org/I2802654988"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":10.8016,"has_fulltext":true,"cited_by_count":299,"citation_normalized_percentile":{"value":0.98705347,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"32","issue":"8","first_page":"1244","last_page":"1246"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.2718999981880188,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.2718999981880188,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10375","display_name":"Pharmacogenetics and Drug Metabolism","score":0.17579999566078186,"subfield":{"id":"https://openalex.org/subfields/3004","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.11330000311136246,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pharmacogenomics","display_name":"Pharmacogenomics","score":0.9237266778945923},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7185178399085999},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.6856389045715332},{"id":"https://openalex.org/keywords/drug-response","display_name":"Drug response","score":0.5923260450363159},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5401536226272583},{"id":"https://openalex.org/keywords/cancer-cell-lines","display_name":"Cancer cell lines","score":0.4800068736076355},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4619377851486206},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4488011300563812},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.4366218149662018},{"id":"https://openalex.org/keywords/realization","display_name":"Realization (probability)","score":0.42990776896476746},{"id":"https://openalex.org/keywords/precision-medicine","display_name":"Precision medicine","score":0.4137933552265167},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.2836044728755951},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.25756606459617615},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.24540382623672485},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.1505739688873291},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.14938369393348694},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.0968620777130127},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.09333276748657227},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08207497000694275}],"concepts":[{"id":"https://openalex.org/C170734499","wikidata":"https://www.wikidata.org/wiki/Q1152227","display_name":"Pharmacogenomics","level":2,"score":0.9237266778945923},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7185178399085999},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.6856389045715332},{"id":"https://openalex.org/C2994119904","wikidata":"https://www.wikidata.org/wiki/Q1251001","display_name":"Drug response","level":3,"score":0.5923260450363159},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5401536226272583},{"id":"https://openalex.org/C2994372470","wikidata":"https://www.wikidata.org/wiki/Q4118072","display_name":"Cancer cell lines","level":4,"score":0.4800068736076355},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4619377851486206},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4488011300563812},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.4366218149662018},{"id":"https://openalex.org/C2781089630","wikidata":"https://www.wikidata.org/wiki/Q21856745","display_name":"Realization (probability)","level":2,"score":0.42990776896476746},{"id":"https://openalex.org/C163763905","wikidata":"https://www.wikidata.org/wiki/Q17075943","display_name":"Precision medicine","level":2,"score":0.4137933552265167},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.2836044728755951},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.25756606459617615},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.24540382623672485},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.1505739688873291},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.14938369393348694},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0968620777130127},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.09333276748657227},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08207497000694275},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C96232424","wikidata":"https://www.wikidata.org/wiki/Q4118072","display_name":"Cancer cell","level":3,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010597","descriptor_name":"Pharmacogenetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010597","descriptor_name":"Pharmacogenetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010597","descriptor_name":"Pharmacogenetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/btv723","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv723","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/8/1244/49018359/bioinformatics_32_8_1244.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26656004","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26656004","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:dipot.ulb.ac.be:2013/231071","is_oa":false,"landing_page_url":"http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/231071","pdf_url":null,"source":{"id":"https://openalex.org/S4306401063","display_name":"D\u00e9p\u00f4t institutionnel de l'Universit\u00e9 libre de Bruxelles (Universit\u00e9 Libre de Bruxelles)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I132053463","host_organization_name":"Universit\u00e9 Libre de Bruxelles","host_organization_lineage":["https://openalex.org/I132053463"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 32 (8","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:irep.ntu.ac.uk:36509","is_oa":false,"landing_page_url":"http://irep.ntu.ac.uk/id/eprint/36509/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400559","display_name":"Nottingham Trent University's Institutional Repository (Nottingham Trent Repository)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I52590639","host_organization_name":"Nottingham Trent University","host_organization_lineage":["https://openalex.org/I52590639"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/8/1244","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/8/1244","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/3868532e-f817-4d2e-b57d-cc4b0e38f891","is_oa":false,"landing_page_url":"https://research.birmingham.ac.uk/en/publications/3868532e-f817-4d2e-b57d-cc4b0e38f891","pdf_url":null,"source":{"id":"https://openalex.org/S4306402634","display_name":"University of Birmingham Research Portal (University of Birmingham)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79619799","host_organization_name":"University of Birmingham","host_organization_lineage":["https://openalex.org/I79619799"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Smirnov, P, Safikhani, Z, El-Hachem, N, Wang, D, She, A, Olsen, C, Freeman, M, Selby, H, Gendoo, D M A, Grossmann, P, Beck, A H, Aerts, H J W L, Lupien, M, Goldenberg, A & Haibe-Kains, B 2016, 'PharmacoGx : an R package for analysis of large pharmacogenomic datasets', Bioinformatics, vol. 32, no. 8, pp. 1244-1246. https://doi.org/10.1093/bioinformatics/btv723","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv723","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv723","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/8/1244/49018359/bioinformatics_32_8_1244.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.4000000059604645}],"awards":[],"funders":[{"id":"https://openalex.org/F4320311169","display_name":"Cancer Research Society","ror":"https://ror.org/00t38a349"},{"id":"https://openalex.org/F4320311238","display_name":"Fondation Brain Canada","ror":"https://ror.org/01bcmwk98"},{"id":"https://openalex.org/F4320313290","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54"},{"id":"https://openalex.org/F4320334506","display_name":"Canadian Institutes of Health Research","ror":"https://ror.org/01gavpb45"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2261944919.pdf","grobid_xml":"https://content.openalex.org/works/W2261944919.grobid-xml"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W1920958927","https://openalex.org/W2008621428","https://openalex.org/W2011474181","https://openalex.org/W2043398720","https://openalex.org/W2059466378","https://openalex.org/W2121604817","https://openalex.org/W2125789330","https://openalex.org/W2130410032","https://openalex.org/W2135827569","https://openalex.org/W2137632714","https://openalex.org/W2155494853","https://openalex.org/W2162371443","https://openalex.org/W6640266867"],"related_works":["https://openalex.org/W2337044897","https://openalex.org/W4285232106","https://openalex.org/W3215139907","https://openalex.org/W3155041571","https://openalex.org/W2768019266","https://openalex.org/W2261944919","https://openalex.org/W2522738587","https://openalex.org/W2560084579","https://openalex.org/W4286296282","https://openalex.org/W4308200591"],"abstract_inverted_index":{"UNLABELLED:":[0],"Pharmacogenomics":[1],"holds":[2],"great":[3],"promise":[4],"for":[5,35,62,125],"the":[6,14,42,45,71,84,92],"development":[7],"of":[8,10,16,44,48,65,73,86,114,123,127],"biomarkers":[9],"drug":[11,79],"response":[12],"and":[13,32,38,91,138,152],"design":[15],"new":[17,121],"therapeutic":[18],"options,":[19],"which":[20],"are":[21,30,168],"key":[22],"challenges":[23],"in":[24,76,89,136],"precision":[25],"medicine.":[26],"However,":[27],"such":[28,82],"data":[29,167],"scattered":[31],"lack":[33],"standards":[34],"efficient":[36],"access":[37],"analysis,":[39],"consequently":[40],"preventing":[41],"realization":[43],"full":[46],"potential":[47],"pharmacogenomics.":[49],"To":[50],"address":[51],"these":[52],"issues,":[53],"we":[54,98],"implemented":[55,135],"PharmacoGx,":[56],"an":[57],"easy-to-use,":[58],"open":[59,120],"source":[60,154],"package":[61,75,104,118,147],"integrative":[63],"analysis":[64],"multiple":[66],"pharmacogenomic":[67,128],"datasets.":[68],"We":[69],"demonstrate":[70],"utility":[72],"our":[74,103,117],"comparing":[77],"large":[78],"sensitivity":[80],"datasets,":[81],"as":[83],"Genomics":[85],"Drug":[87],"Sensitivity":[88],"Cancer":[90,93],"Cell":[94],"Line":[95],"Encyclopedia.":[96],"Moreover,":[97],"show":[99],"how":[100],"to":[101,105],"use":[102],"easily":[106,141],"perform":[107],"Connectivity":[108],"Map":[109],"analysis.":[110],"With":[111],"increasing":[112],"availability":[113],"drug-related":[115],"data,":[116],"will":[119],"avenues":[122],"research":[124],"meta-analysis":[126],"data.":[129],"AVAILABILITY":[130],"AND":[131],"IMPLEMENTATION:":[132],"PharmacoGx":[133],"is":[134,148,156],"R":[137],"can":[139],"be":[140],"installed":[142],"on":[143],"any":[144],"system.":[145],"The":[146],"available":[149,157,169],"from":[150,158],"CRAN":[151],"its":[153],"code":[155],"GitHub.":[159],"CONTACT:":[160],"bhaibeka@uhnresearch.ca":[161],"or":[162],"benjamin.haibe.kains@utoronto.ca":[163],"SUPPLEMENTARY":[164],"INFORMATION:":[165],"Supplementary":[166],"at":[170],"Bioinformatics":[171],"online.":[172]},"counts_by_year":[{"year":2026,"cited_by_count":10},{"year":2025,"cited_by_count":15},{"year":2024,"cited_by_count":21},{"year":2023,"cited_by_count":47},{"year":2022,"cited_by_count":40},{"year":2021,"cited_by_count":39},{"year":2020,"cited_by_count":41},{"year":2019,"cited_by_count":38},{"year":2018,"cited_by_count":16},{"year":2017,"cited_by_count":20},{"year":2016,"cited_by_count":11},{"year":2015,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
