{"id":"https://openalex.org/W2200508156","doi":"https://doi.org/10.1093/bioinformatics/btv721","title":"FuMa: reporting overlap in RNA-seq detected fusion genes","display_name":"FuMa: reporting overlap in RNA-seq detected fusion genes","publication_year":2015,"publication_date":"2015-12-10","ids":{"openalex":"https://openalex.org/W2200508156","doi":"https://doi.org/10.1093/bioinformatics/btv721","mag":"2200508156","pmid":"https://pubmed.ncbi.nlm.nih.gov/26656567"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv721","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv721","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/8/1226/49018773/bioinformatics_32_8_1226.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/8/1226/49018773/bioinformatics_32_8_1226.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081979091","display_name":"Youri Hoogstrate","orcid":"https://orcid.org/0000-0003-2166-0676"},"institutions":[{"id":"https://openalex.org/I2801952686","display_name":"Erasmus MC","ror":"https://ror.org/018906e22","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2801952686"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Youri Hoogstrate","raw_affiliation_strings":["1 Department of Urology and","2 Department of Bioinformatics, Erasmus University Medical Center, Rotterdam, 3000 CA, The Netherlands"],"affiliations":[{"raw_affiliation_string":"1 Department of Urology and","institution_ids":[]},{"raw_affiliation_string":"2 Department of Bioinformatics, Erasmus University Medical Center, Rotterdam, 3000 CA, The Netherlands","institution_ids":["https://openalex.org/I2801952686"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013732323","display_name":"Ren\u00e9 B\u00f6ttcher","orcid":"https://orcid.org/0000-0001-8581-3876"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ren\u00e9 B\u00f6ttcher","raw_affiliation_strings":["1 Department of Urology and"],"affiliations":[{"raw_affiliation_string":"1 Department of Urology and","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013915440","display_name":"Saskia Hiltemann","orcid":"https://orcid.org/0000-0003-3803-468X"},"institutions":[{"id":"https://openalex.org/I2801952686","display_name":"Erasmus MC","ror":"https://ror.org/018906e22","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2801952686"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Saskia Hiltemann","raw_affiliation_strings":["1 Department of Urology and","2 Department of Bioinformatics, Erasmus University Medical Center, Rotterdam, 3000 CA, The Netherlands"],"affiliations":[{"raw_affiliation_string":"1 Department of Urology and","institution_ids":[]},{"raw_affiliation_string":"2 Department of Bioinformatics, Erasmus University Medical Center, Rotterdam, 3000 CA, The Netherlands","institution_ids":["https://openalex.org/I2801952686"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065513365","display_name":"Peter J. van der Spek","orcid":"https://orcid.org/0000-0002-2203-0652"},"institutions":[{"id":"https://openalex.org/I2801952686","display_name":"Erasmus MC","ror":"https://ror.org/018906e22","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2801952686"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Peter J. van der Spek","raw_affiliation_strings":["2 Department of Bioinformatics, Erasmus University Medical Center, Rotterdam, 3000 CA, The Netherlands"],"affiliations":[{"raw_affiliation_string":"2 Department of Bioinformatics, Erasmus University Medical Center, Rotterdam, 3000 CA, The Netherlands","institution_ids":["https://openalex.org/I2801952686"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034635531","display_name":"Guido Jenster","orcid":"https://orcid.org/0000-0002-8658-2552"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Guido Jenster","raw_affiliation_strings":["1 Department of Urology and"],"affiliations":[{"raw_affiliation_string":"1 Department of Urology and","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5107426757","display_name":"Andrew Stubbs","orcid":"https://orcid.org/0000-0001-9817-9982"},"institutions":[{"id":"https://openalex.org/I2801952686","display_name":"Erasmus MC","ror":"https://ror.org/018906e22","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2801952686"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Andrew P. Stubbs","raw_affiliation_strings":["2 Department of Bioinformatics, Erasmus University Medical Center, Rotterdam, 3000 CA, The Netherlands"],"affiliations":[{"raw_affiliation_string":"2 Department of Bioinformatics, Erasmus University Medical Center, Rotterdam, 3000 CA, The Netherlands","institution_ids":["https://openalex.org/I2801952686"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5081979091"],"corresponding_institution_ids":["https://openalex.org/I2801952686"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.4527,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.66709861,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"32","issue":"8","first_page":"1226","last_page":"1228"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.988099992275238,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6516886949539185},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5871469378471375},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.58644700050354},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.5625911951065063},{"id":"https://openalex.org/keywords/fusion-gene","display_name":"Fusion gene","score":0.5377135276794434},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.42881375551223755},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3539387583732605},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3442223370075226},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.303385853767395},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2890770435333252},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.09531274437904358}],"concepts":[{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6516886949539185},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5871469378471375},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.58644700050354},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.5625911951065063},{"id":"https://openalex.org/C111829193","wikidata":"https://www.wikidata.org/wiki/Q1108970","display_name":"Fusion gene","level":3,"score":0.5377135276794434},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.42881375551223755},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3539387583732605},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3442223370075226},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.303385853767395},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2890770435333252},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.09531274437904358},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btv721","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv721","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/8/1226/49018773/bioinformatics_32_8_1226.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26656567","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26656567","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:eur:oai:pure.eur.nl:publications/40f6af9b-dede-44a2-ab2f-9969dc913675","is_oa":false,"landing_page_url":"https://pure.eur.nl/en/publications/40f6af9b-dede-44a2-ab2f-9969dc913675","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 32(8), 1226 - 1228. Oxford University Press","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/8/1226","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/8/1226","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pure.eur.nl:publications/40f6af9b-dede-44a2-ab2f-9969dc913675","is_oa":false,"landing_page_url":"http://hdl.handle.net/1765/87374","pdf_url":null,"source":{"id":"https://openalex.org/S4306401266","display_name":"EUR Research Repository (Erasmus University Rotterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I913958620","host_organization_name":"Erasmus University Rotterdam","host_organization_lineage":["https://openalex.org/I913958620"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Hoogstrate , Y , B\u00f6ttcher , R , Hiltemann , S , van der Spek , P , Jenster , G &amp; Stubbs , A 2016 , ' FuMa: reporting overlap in RNA-seq detected fusion genes ' , Bioinformatics , vol. 32 , no. 8 , pp. 1226-1228 . https://doi.org/10.1093/bioinformatics/btv721","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv721","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv721","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/8/1226/49018773/bioinformatics_32_8_1226.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320323596","display_name":"Center for Translational Molecular Medicine","ror":"https://ror.org/047wvvg23"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2200508156.pdf","grobid_xml":"https://content.openalex.org/works/W2200508156.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W1565378970","https://openalex.org/W1981528949","https://openalex.org/W2009965783","https://openalex.org/W2029623390","https://openalex.org/W2042690128","https://openalex.org/W2088612061","https://openalex.org/W2103569192","https://openalex.org/W2111350087","https://openalex.org/W2124887618","https://openalex.org/W2128142447","https://openalex.org/W2128863574","https://openalex.org/W2134526812","https://openalex.org/W2136482257","https://openalex.org/W2166422007"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W1533177136","https://openalex.org/W4380994516","https://openalex.org/W2556260348"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
