{"id":"https://openalex.org/W2291640041","doi":"https://doi.org/10.1093/bioinformatics/btv713","title":"CASSIS and SMIPS: promoter-based prediction of secondary metabolite gene clusters in eukaryotic genomes","display_name":"CASSIS and SMIPS: promoter-based prediction of secondary metabolite gene clusters in eukaryotic genomes","publication_year":2015,"publication_date":"2015-12-09","ids":{"openalex":"https://openalex.org/W2291640041","doi":"https://doi.org/10.1093/bioinformatics/btv713","mag":"2291640041","pmid":"https://pubmed.ncbi.nlm.nih.gov/26656005"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv713","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv713","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/8/1138/16920820/btv713.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/8/1138/16920820/btv713.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055402965","display_name":"Thomas Wolf","orcid":"https://orcid.org/0000-0002-9781-3459"},"institutions":[{"id":"https://openalex.org/I4210162077","display_name":"Leibniz-Institut f\u00fcr Naturstoff-Forschung und Infektionsbiologie e. V. - Hans-Kn\u00f6ll-Institut (HKI)","ror":"https://ror.org/055s37c97","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210162077"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Thomas Wolf","raw_affiliation_strings":["Research Group Systems Biology/Bioinformatics, Leibniz Institute for Natural Product Research and Infection Biology \u2013 Hans-Kn\u00f6ll-Institute (HKI), Jena 07745, Germany"],"affiliations":[{"raw_affiliation_string":"Research Group Systems Biology/Bioinformatics, Leibniz Institute for Natural Product Research and Infection Biology \u2013 Hans-Kn\u00f6ll-Institute (HKI), Jena 07745, Germany","institution_ids":["https://openalex.org/I4210162077"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015549027","display_name":"Vladimir Shelest","orcid":null},"institutions":[{"id":"https://openalex.org/I4210162077","display_name":"Leibniz-Institut f\u00fcr Naturstoff-Forschung und Infektionsbiologie e. V. - Hans-Kn\u00f6ll-Institut (HKI)","ror":"https://ror.org/055s37c97","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210162077"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Vladimir Shelest","raw_affiliation_strings":["Research Group Systems Biology/Bioinformatics, Leibniz Institute for Natural Product Research and Infection Biology \u2013 Hans-Kn\u00f6ll-Institute (HKI), Jena 07745, Germany"],"affiliations":[{"raw_affiliation_string":"Research Group Systems Biology/Bioinformatics, Leibniz Institute for Natural Product Research and Infection Biology \u2013 Hans-Kn\u00f6ll-Institute (HKI), Jena 07745, Germany","institution_ids":["https://openalex.org/I4210162077"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073880821","display_name":"Neetika Nath","orcid":"https://orcid.org/0000-0002-2156-9576"},"institutions":[{"id":"https://openalex.org/I4210162077","display_name":"Leibniz-Institut f\u00fcr Naturstoff-Forschung und Infektionsbiologie e. V. - Hans-Kn\u00f6ll-Institut (HKI)","ror":"https://ror.org/055s37c97","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210162077"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Neetika Nath","raw_affiliation_strings":["Research Group Systems Biology/Bioinformatics, Leibniz Institute for Natural Product Research and Infection Biology \u2013 Hans-Kn\u00f6ll-Institute (HKI), Jena 07745, Germany"],"affiliations":[{"raw_affiliation_string":"Research Group Systems Biology/Bioinformatics, Leibniz Institute for Natural Product Research and Infection Biology \u2013 Hans-Kn\u00f6ll-Institute (HKI), Jena 07745, Germany","institution_ids":["https://openalex.org/I4210162077"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030772081","display_name":"Ekaterina Shelest","orcid":"https://orcid.org/0000-0002-9751-6702"},"institutions":[{"id":"https://openalex.org/I4210162077","display_name":"Leibniz-Institut f\u00fcr Naturstoff-Forschung und Infektionsbiologie e. V. - Hans-Kn\u00f6ll-Institut (HKI)","ror":"https://ror.org/055s37c97","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210162077"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Ekaterina Shelest","raw_affiliation_strings":["Research Group Systems Biology/Bioinformatics, Leibniz Institute for Natural Product Research and Infection Biology \u2013 Hans-Kn\u00f6ll-Institute (HKI), Jena 07745, Germany"],"affiliations":[{"raw_affiliation_string":"Research Group Systems Biology/Bioinformatics, Leibniz Institute for Natural Product Research and Infection Biology \u2013 Hans-Kn\u00f6ll-Institute (HKI), Jena 07745, Germany","institution_ids":["https://openalex.org/I4210162077"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5030772081","https://openalex.org/A5055402965"],"corresponding_institution_ids":["https://openalex.org/I4210162077"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":10.1427,"has_fulltext":false,"cited_by_count":131,"citation_normalized_percentile":{"value":0.98551169,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"32","issue":"8","first_page":"1138","last_page":"1143"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11882","display_name":"Plant biochemistry and biosynthesis","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9918000102043152,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7458393573760986},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6413710117340088},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.632911205291748},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.6074362397193909},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5419803857803345},{"id":"https://openalex.org/keywords/gene-cluster","display_name":"Gene cluster","score":0.4980967044830322},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.36472034454345703}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7458393573760986},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6413710117340088},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.632911205291748},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.6074362397193909},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5419803857803345},{"id":"https://openalex.org/C36857842","wikidata":"https://www.wikidata.org/wiki/Q1501261","display_name":"Gene cluster","level":3,"score":0.4980967044830322},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.36472034454345703}],"mesh":[{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010453","descriptor_name":"Peptide Synthases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010453","descriptor_name":"Peptide Synthases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010453","descriptor_name":"Peptide Synthases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D048630","descriptor_name":"Polyketide Synthases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D048630","descriptor_name":"Polyketide Synthases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D048630","descriptor_name":"Polyketide Synthases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D056890","descriptor_name":"Eukaryota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056890","descriptor_name":"Eukaryota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056890","descriptor_name":"Eukaryota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btv713","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv713","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/8/1138/16920820/btv713.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26656005","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26656005","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:3795104","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4824125","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/8/1138","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/8/1138","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:researchportal.port.ac.uk:publications/e9dcafe3-e6c9-4806-8972-1a4656e35f34","is_oa":true,"landing_page_url":"https://academic.oup.com/bioinformatics/article-lookup/doi/10.1093/bioinformatics/btv713","pdf_url":null,"source":{"id":"https://openalex.org/S4306401774","display_name":"Portsmouth Research Portal (University of Portsmouth)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I63072094","host_organization_name":"University of Portsmouth","host_organization_lineage":["https://openalex.org/I63072094"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv713","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv713","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/8/1138/16920820/btv713.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/14","score":0.8299999833106995,"display_name":"Life below water"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2291640041.pdf","grobid_xml":"https://content.openalex.org/works/W2291640041.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W1592870802","https://openalex.org/W1840223153","https://openalex.org/W1965811910","https://openalex.org/W1975828187","https://openalex.org/W1991415074","https://openalex.org/W2027197117","https://openalex.org/W2043536142","https://openalex.org/W2061154517","https://openalex.org/W2062946300","https://openalex.org/W2072269947","https://openalex.org/W2086953382","https://openalex.org/W2094402554","https://openalex.org/W2100916740","https://openalex.org/W2101962513","https://openalex.org/W2114839447","https://openalex.org/W2140952049","https://openalex.org/W2145974700","https://openalex.org/W2156202011","https://openalex.org/W2157009395","https://openalex.org/W2328248343","https://openalex.org/W4212983021"],"related_works":["https://openalex.org/W2987420353","https://openalex.org/W2003194288","https://openalex.org/W2513589746","https://openalex.org/W1491897707","https://openalex.org/W2213189664","https://openalex.org/W2153919606","https://openalex.org/W2113024639","https://openalex.org/W2062254828","https://openalex.org/W4237480606","https://openalex.org/W2936968863"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":15},{"year":2022,"cited_by_count":19},{"year":2021,"cited_by_count":13},{"year":2020,"cited_by_count":11},{"year":2019,"cited_by_count":14},{"year":2018,"cited_by_count":15},{"year":2017,"cited_by_count":12},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":2}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}