{"id":"https://openalex.org/W2172358623","doi":"https://doi.org/10.1093/bioinformatics/btv693","title":"Genefu: an R/Bioconductor package for computation of gene expression-based signatures in breast cancer","display_name":"Genefu: an R/Bioconductor package for computation of gene expression-based signatures in breast cancer","publication_year":2015,"publication_date":"2015-11-24","ids":{"openalex":"https://openalex.org/W2172358623","doi":"https://doi.org/10.1093/bioinformatics/btv693","mag":"2172358623","pmid":"https://pubmed.ncbi.nlm.nih.gov/26607490"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv693","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv693","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/7/1097/49018659/bioinformatics_32_7_1097.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/7/1097/49018659/bioinformatics_32_7_1097.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046072860","display_name":"Deena M.A. Gendoo","orcid":"https://orcid.org/0000-0001-8891-4138"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Deena M. A. Gendoo","raw_affiliation_strings":["1 Bioinformatics and Computational Laboratory, Princess Margaret Cancer Centre, University Health Network and","2 Department of Medical Biophysics, University of Toronto, Toronto, ON, Canada,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Bioinformatics and Computational Laboratory, Princess Margaret Cancer Centre, University Health Network and","institution_ids":["https://openalex.org/I2802654988","https://openalex.org/I1325899441"]},{"raw_affiliation_string":"2 Department of Medical Biophysics, University of Toronto, Toronto, ON, Canada,","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008550140","display_name":"Natchar Ratanasirigulchai","orcid":null},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Natchar Ratanasirigulchai","raw_affiliation_strings":["1 Bioinformatics and Computational Laboratory, Princess Margaret Cancer Centre, University Health Network and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Bioinformatics and Computational Laboratory, Princess Margaret Cancer Centre, University Health Network and","institution_ids":["https://openalex.org/I2802654988","https://openalex.org/I1325899441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101625610","display_name":"Markus Schr\u00f6der","orcid":"https://orcid.org/0000-0001-5942-1254"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Markus S. Schr\u00f6der","raw_affiliation_strings":["3 UCD School of Biomolecular and Biomedical Science, Conway Institute, University College Dublin, Dublin, UK,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"3 UCD School of Biomolecular and Biomedical Science, Conway Institute, University College Dublin, Dublin, UK,","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070297345","display_name":"Laia Par\u00e9","orcid":"https://orcid.org/0000-0002-4904-558X"},"institutions":[{"id":"https://openalex.org/I4210160192","display_name":"Consorci Institut D'Investigacions Biomediques August Pi I Sunyer","ror":"https://ror.org/054vayn55","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210160192","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Laia Par\u00e9","raw_affiliation_strings":["4 Translational Genomics and Targeted Therapeutics in Solid Tumors, August Pi i Sunyer Biomedical Research Institute (IDIBAPS), 08036 Barcelona, Spain,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"4 Translational Genomics and Targeted Therapeutics in Solid Tumors, August Pi i Sunyer Biomedical Research Institute (IDIBAPS), 08036 Barcelona, Spain,","institution_ids":["https://openalex.org/I4210160192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054811851","display_name":"Joel S. Parker","orcid":"https://orcid.org/0000-0003-2080-6901"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]},{"id":"https://openalex.org/I4390039329","display_name":"UNC Lineberger Comprehensive Cancer Center","ror":"https://ror.org/043ehm030","country_code":null,"type":"healthcare","lineage":["https://openalex.org/I114027177","https://openalex.org/I4390039329"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joel S. Parker","raw_affiliation_strings":["5 Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC 27599, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"5 Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC 27599, USA,","institution_ids":["https://openalex.org/I114027177","https://openalex.org/I4390039329"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089513581","display_name":"Aleix Prat","orcid":"https://orcid.org/0000-0003-2377-540X"},"institutions":[{"id":"https://openalex.org/I4210115097","display_name":"Hospital Cl\u00ednic de Barcelona","ror":"https://ror.org/02a2kzf50","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210115097"]},{"id":"https://openalex.org/I4210151726","display_name":"CIBBIM-Nanomedicine","ror":"https://ror.org/04xezgr31","country_code":"ES","type":"other","lineage":["https://openalex.org/I4210102407","https://openalex.org/I4210127641","https://openalex.org/I4210151726","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I4210160192","display_name":"Consorci Institut D'Investigacions Biomediques August Pi I Sunyer","ror":"https://ror.org/054vayn55","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210160192","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I4387155398","display_name":"Vall d'Hebron Institute of Oncology","ror":"https://ror.org/054xx3904","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4387153040","https://openalex.org/I4387155398"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Aleix Prat","raw_affiliation_strings":["4 Translational Genomics and Targeted Therapeutics in Solid Tumors, August Pi i Sunyer Biomedical Research Institute (IDIBAPS), 08036 Barcelona, Spain,","6 Translational Genomics Group, Vall d\u2019Hebron Institute of Oncology (VHIO), 08035 Barcelona, Spain and","7 Department of Medical Oncology, Hospital Cl\u00ednic of Barcelona, 08036 Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"4 Translational Genomics and Targeted Therapeutics in Solid Tumors, August Pi i Sunyer Biomedical Research Institute (IDIBAPS), 08036 Barcelona, Spain,","institution_ids":["https://openalex.org/I4210160192"]},{"raw_affiliation_string":"6 Translational Genomics Group, Vall d\u2019Hebron Institute of Oncology (VHIO), 08035 Barcelona, Spain and","institution_ids":["https://openalex.org/I4210151726","https://openalex.org/I4387155398"]},{"raw_affiliation_string":"7 Department of Medical Oncology, Hospital Cl\u00ednic of Barcelona, 08036 Barcelona, Spain","institution_ids":["https://openalex.org/I4210115097"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010487226","display_name":"Benjamin Haibe\u2010Kains","orcid":"https://orcid.org/0000-0002-7684-0079"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Benjamin Haibe-Kains","raw_affiliation_strings":["1 Bioinformatics and Computational Laboratory, Princess Margaret Cancer Centre, University Health Network and","2 Department of Medical Biophysics, University of Toronto, Toronto, ON, Canada,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Bioinformatics and Computational Laboratory, Princess Margaret Cancer Centre, University Health Network and","institution_ids":["https://openalex.org/I2802654988","https://openalex.org/I1325899441"]},{"raw_affiliation_string":"2 Department of Medical Biophysics, University of Toronto, Toronto, ON, Canada,","institution_ids":["https://openalex.org/I185261750"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5010487226"],"corresponding_institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I185261750","https://openalex.org/I2802654988"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":7.4366,"has_fulltext":true,"cited_by_count":419,"citation_normalized_percentile":{"value":0.98015077,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"32","issue":"7","first_page":"1097","last_page":"1099"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.6536999940872192,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.6536999940872192,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.1492999941110611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.044599998742341995,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.9879451990127563},{"id":"https://openalex.org/keywords/compendium","display_name":"Compendium","score":0.6889533996582031},{"id":"https://openalex.org/keywords/subtyping","display_name":"Subtyping","score":0.6807648539543152},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6119197607040405},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.5917854309082031},{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.573012113571167},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.546442449092865},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4391992688179016},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.41916701197624207},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3500218391418457},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.31438225507736206},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.22186842560768127},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18815332651138306},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.17540550231933594},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09173309803009033}],"concepts":[{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.9879451990127563},{"id":"https://openalex.org/C2778473407","wikidata":"https://www.wikidata.org/wiki/Q1459574","display_name":"Compendium","level":2,"score":0.6889533996582031},{"id":"https://openalex.org/C83852419","wikidata":"https://www.wikidata.org/wiki/Q2713292","display_name":"Subtyping","level":2,"score":0.6807648539543152},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6119197607040405},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.5917854309082031},{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.573012113571167},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.546442449092865},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4391992688179016},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.41916701197624207},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3500218391418457},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.31438225507736206},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.22186842560768127},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18815332651138306},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.17540550231933594},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09173309803009033},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1093/bioinformatics/btv693","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv693","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/7/1097/49018659/bioinformatics_32_7_1097.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26607490","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26607490","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:5402418","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6410906","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:irep.ntu.ac.uk:36508","is_oa":false,"landing_page_url":"http://irep.ntu.ac.uk/id/eprint/36508/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400559","display_name":"Nottingham Trent University's Institutional Repository (Nottingham Trent Repository)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I52590639","host_organization_name":"Nottingham Trent University","host_organization_lineage":["https://openalex.org/I52590639"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/7/1097","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/7/1097","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:6410906","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6410906","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/27c9c600-e85f-4fbe-8755-3b65933cc2d7","is_oa":false,"landing_page_url":"https://research.birmingham.ac.uk/en/publications/27c9c600-e85f-4fbe-8755-3b65933cc2d7","pdf_url":null,"source":{"id":"https://openalex.org/S4306402634","display_name":"University of Birmingham Research Portal (University of Birmingham)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79619799","host_organization_name":"University of Birmingham","host_organization_lineage":["https://openalex.org/I79619799"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Gendoo, D M A, Ratanasirigulchai, N, Schr\u00f6der, M S, Par\u00e9, L, Parker, J S, Prat, A & Haibe-Kains, B 2016, 'Genefu : an R/Bioconductor package for computation of gene expression-based signatures in breast cancer', Bioinformatics, vol. 32, no. 7, pp. 1097-1099. https://doi.org/10.1093/bioinformatics/btv693","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv693","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv693","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/7/1097/49018659/bioinformatics_32_7_1097.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.6700000166893005,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G1569999668","display_name":null,"funder_award_id":"P50 CA058223","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G195211334","display_name":null,"funder_award_id":"201412MSH-340176-229599","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G5950207643","display_name":"Validaci\u00f3n de un predictor gen\u00f3mico en c\u00e1ncer de mama triple-negativo","funder_award_id":"PI13/01718","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"}],"funders":[{"id":"https://openalex.org/F4320311169","display_name":"Cancer Research Society","ror":"https://ror.org/00t38a349"},{"id":"https://openalex.org/F4320311238","display_name":"Fondation Brain Canada","ror":"https://ror.org/01bcmwk98"},{"id":"https://openalex.org/F4320323113","display_name":"Banco Bilbao Vizcaya Argentaria","ror":"https://ror.org/0537dnd74"},{"id":"https://openalex.org/F4320334506","display_name":"Canadian Institutes of Health Research","ror":"https://ror.org/01gavpb45"},{"id":"https://openalex.org/F4320334923","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2172358623.pdf","grobid_xml":"https://content.openalex.org/works/W2172358623.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W1967186439","https://openalex.org/W1990371044","https://openalex.org/W2005895632","https://openalex.org/W2028236537","https://openalex.org/W2044702943","https://openalex.org/W2074465378","https://openalex.org/W2084359365","https://openalex.org/W2096283457","https://openalex.org/W2102461795","https://openalex.org/W2106292881","https://openalex.org/W2124640147","https://openalex.org/W2137028370","https://openalex.org/W2140628034","https://openalex.org/W2157168213","https://openalex.org/W2159755394","https://openalex.org/W2560367415"],"related_works":["https://openalex.org/W2982252354","https://openalex.org/W2728564446","https://openalex.org/W3045904767","https://openalex.org/W2161868542","https://openalex.org/W2140163842","https://openalex.org/W3156537409","https://openalex.org/W2747931568","https://openalex.org/W2133055377","https://openalex.org/W2921090651","https://openalex.org/W2287365612"],"abstract_inverted_index":{"UNLABELLED:":[0],"Breast":[1],"cancer":[2,20],"is":[3,45,97,104],"one":[4],"of":[5,18,25,42,54,77],"the":[6,15,70],"most":[7],"frequent":[8],"cancers":[9],"among":[10],"women.":[11],"Extensive":[12],"studies":[13],"into":[14],"molecular":[16,26,84],"heterogeneity":[17],"breast":[19,89],"have":[21],"produced":[22],"a":[23,46,74],"plethora":[24],"subtype":[27],"classification":[28,58],"and":[29,57,63,80,86],"prognosis":[30],"prediction":[31],"algorithms,":[32],"as":[33,35],"well":[34],"numerous":[36],"gene":[37,81],"expression":[38],"signatures.":[39],"However,":[40],"reimplementation":[41],"these":[43],"algorithms":[44,79],"tedious":[47],"but":[48],"important":[49],"task":[50],"to":[51],"enable":[52],"comparison":[53],"existing":[55],"signatures":[56,82],"models":[59],"between":[60],"each":[61],"other":[62],"with":[64],"new":[65],"models.":[66],"Here,":[67],"we":[68],"present":[69],"genefu":[71,95],"R/Bioconductor":[72],"package,":[73],"multi-tiered":[75],"compendium":[76],"bioinformatics":[78],"for":[83],"subtyping":[85],"prognostication":[87],"in":[88],"cancer.":[90],"AVAILABILITY":[91],"AND":[92],"IMPLEMENTATION:":[93],"The":[94],"package":[96],"available":[98,106,117],"from":[99],"Bioconductor.":[100],"http://www.bioconductor.org/packages/devel/bioc/html/genefu.html":[101],"Source":[102],"code":[103],"also":[105],"on":[107],"Github":[108],"https://github.com/bhklab/genefu":[109],"CONTACT:":[110],"bhaibeka@uhnresearch.ca":[111],"SUPPLEMENTARY":[112],"INFORMATION:":[113],"Supplementary":[114],"data":[115],"are":[116],"at":[118],"Bioinformatics":[119],"online.":[120]},"counts_by_year":[{"year":2026,"cited_by_count":31},{"year":2025,"cited_by_count":49},{"year":2024,"cited_by_count":40},{"year":2023,"cited_by_count":55},{"year":2022,"cited_by_count":47},{"year":2021,"cited_by_count":51},{"year":2020,"cited_by_count":49},{"year":2019,"cited_by_count":42},{"year":2018,"cited_by_count":29},{"year":2017,"cited_by_count":18},{"year":2016,"cited_by_count":7},{"year":2013,"cited_by_count":1}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
