{"id":"https://openalex.org/W2202187342","doi":"https://doi.org/10.1093/bioinformatics/btv685","title":"SomVarIUS: somatic variant identification from unpaired tissue samples","display_name":"SomVarIUS: somatic variant identification from unpaired tissue samples","publication_year":2015,"publication_date":"2015-11-20","ids":{"openalex":"https://openalex.org/W2202187342","doi":"https://doi.org/10.1093/bioinformatics/btv685","mag":"2202187342","pmid":"https://pubmed.ncbi.nlm.nih.gov/26589277"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv685","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv685","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/6/808/49018502/bioinformatics_32_6_808.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/6/808/49018502/bioinformatics_32_6_808.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101900485","display_name":"Kyle Smith","orcid":"https://orcid.org/0009-0004-6274-1864"},"institutions":[{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kyle S. Smith","raw_affiliation_strings":["1 Department of Medicine,","2 Department of Pharmacology,","3 Computational Biosciences Training Program, University of Colorado School of Medicine, Aurora, CO, USA,"],"affiliations":[{"raw_affiliation_string":"1 Department of Medicine,","institution_ids":[]},{"raw_affiliation_string":"2 Department of Pharmacology,","institution_ids":[]},{"raw_affiliation_string":"3 Computational Biosciences Training Program, University of Colorado School of Medicine, Aurora, CO, USA,","institution_ids":["https://openalex.org/I921990950"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064937521","display_name":"Vinod Kumar Yadav","orcid":"https://orcid.org/0000-0001-6450-7036"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Vinod K. Yadav","raw_affiliation_strings":["1 Department of Medicine,"],"affiliations":[{"raw_affiliation_string":"1 Department of Medicine,","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004742310","display_name":"Shanshan Pei","orcid":"https://orcid.org/0000-0001-9619-2614"},"institutions":[{"id":"https://openalex.org/I4210134151","display_name":"University of Colorado Cancer Center","ror":"https://ror.org/04cqn7d42","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210134151"]},{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shanshan Pei","raw_affiliation_strings":["4 University of Colorado Cancer Center, Aurora, CO, USA and"],"affiliations":[{"raw_affiliation_string":"4 University of Colorado Cancer Center, Aurora, CO, USA and","institution_ids":["https://openalex.org/I921990950","https://openalex.org/I4210134151"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032549755","display_name":"Daniel A. Pollyea","orcid":"https://orcid.org/0000-0001-6519-4860"},"institutions":[{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]},{"id":"https://openalex.org/I4210134151","display_name":"University of Colorado Cancer Center","ror":"https://ror.org/04cqn7d42","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210134151"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel A. Pollyea","raw_affiliation_strings":["1 Department of Medicine,","4 University of Colorado Cancer Center, Aurora, CO, USA and"],"affiliations":[{"raw_affiliation_string":"1 Department of Medicine,","institution_ids":[]},{"raw_affiliation_string":"4 University of Colorado Cancer Center, Aurora, CO, USA and","institution_ids":["https://openalex.org/I921990950","https://openalex.org/I4210134151"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038867429","display_name":"Craig T. Jordan","orcid":"https://orcid.org/0000-0003-0869-3465"},"institutions":[{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]},{"id":"https://openalex.org/I4210134151","display_name":"University of Colorado Cancer Center","ror":"https://ror.org/04cqn7d42","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210134151"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Craig T. Jordan","raw_affiliation_strings":["1 Department of Medicine,","4 University of Colorado Cancer Center, Aurora, CO, USA and"],"affiliations":[{"raw_affiliation_string":"1 Department of Medicine,","institution_ids":[]},{"raw_affiliation_string":"4 University of Colorado Cancer Center, Aurora, CO, USA and","institution_ids":["https://openalex.org/I921990950","https://openalex.org/I4210134151"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036093562","display_name":"Subhajyoti De","orcid":"https://orcid.org/0000-0002-2313-8593"},"institutions":[{"id":"https://openalex.org/I151808059","display_name":"Colorado School of Public Health","ror":"https://ror.org/005x9g035","country_code":"US","type":"education","lineage":["https://openalex.org/I151808059"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Subhajyoti De","raw_affiliation_strings":["1 Department of Medicine,","2 Department of Pharmacology,","5 Department of Biostatistics and Informatics, Colorado School of Public Health, Aurora, CO, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Medicine,","institution_ids":[]},{"raw_affiliation_string":"2 Department of Pharmacology,","institution_ids":[]},{"raw_affiliation_string":"5 Department of Biostatistics and Informatics, Colorado School of Public Health, Aurora, CO, USA","institution_ids":["https://openalex.org/I151808059"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5036093562"],"corresponding_institution_ids":["https://openalex.org/I151808059"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.3798,"has_fulltext":true,"cited_by_count":49,"citation_normalized_percentile":{"value":0.79610171,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"32","issue":"6","first_page":"808","last_page":"813"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/somatic-cell","display_name":"Somatic cell","score":0.8053176403045654},{"id":"https://openalex.org/keywords/exome","display_name":"Exome","score":0.5784541964530945},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5671916007995605},{"id":"https://openalex.org/keywords/exome-sequencing","display_name":"Exome sequencing","score":0.5669817924499512},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5506366491317749},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.4659387171268463},{"id":"https://openalex.org/keywords/deep-sequencing","display_name":"Deep sequencing","score":0.453371524810791},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4195522665977478},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.3280848562717438},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.2942217290401459},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.23423057794570923},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.20453113317489624}],"concepts":[{"id":"https://openalex.org/C134305767","wikidata":"https://www.wikidata.org/wiki/Q725508","display_name":"Somatic cell","level":3,"score":0.8053176403045654},{"id":"https://openalex.org/C10590036","wikidata":"https://www.wikidata.org/wiki/Q417664","display_name":"Exome","level":5,"score":0.5784541964530945},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5671916007995605},{"id":"https://openalex.org/C16671776","wikidata":"https://www.wikidata.org/wiki/Q5420592","display_name":"Exome sequencing","level":4,"score":0.5669817924499512},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5506366491317749},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.4659387171268463},{"id":"https://openalex.org/C132917006","wikidata":"https://www.wikidata.org/wiki/Q5250436","display_name":"Deep sequencing","level":4,"score":0.453371524810791},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4195522665977478},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.3280848562717438},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.2942217290401459},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.23423057794570923},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.20453113317489624},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059472","descriptor_name":"Exome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059472","descriptor_name":"Exome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059472","descriptor_name":"Exome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btv685","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv685","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/6/808/49018502/bioinformatics_32_6_808.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26589277","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26589277","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/6/808","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/6/808","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv685","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv685","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/6/808/49018502/bioinformatics_32_6_808.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320337868","display_name":"University of Colorado School of Medicine, Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2202187342.pdf","grobid_xml":"https://content.openalex.org/works/W2202187342.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W1531816655","https://openalex.org/W1565378970","https://openalex.org/W1818531208","https://openalex.org/W1965857060","https://openalex.org/W1979115864","https://openalex.org/W1993330637","https://openalex.org/W2015182193","https://openalex.org/W2018046598","https://openalex.org/W2026455681","https://openalex.org/W2042587503","https://openalex.org/W2053218599","https://openalex.org/W2060427373","https://openalex.org/W2080659813","https://openalex.org/W2093144236","https://openalex.org/W2124531484","https://openalex.org/W2128262534","https://openalex.org/W2138601221","https://openalex.org/W2155943701"],"related_works":["https://openalex.org/W2093932542","https://openalex.org/W2043256480","https://openalex.org/W2106924416","https://openalex.org/W2772505697","https://openalex.org/W3083501552","https://openalex.org/W2400191746","https://openalex.org/W1983406990","https://openalex.org/W2484239316","https://openalex.org/W3024198590","https://openalex.org/W4367844067"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":3}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
