{"id":"https://openalex.org/W2175094144","doi":"https://doi.org/10.1093/bioinformatics/btv681","title":"JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison","display_name":"JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison","publication_year":2015,"publication_date":"2015-11-16","ids":{"openalex":"https://openalex.org/W2175094144","doi":"https://doi.org/10.1093/bioinformatics/btv681","mag":"2175094144","pmid":"https://pubmed.ncbi.nlm.nih.gov/26576653"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv681","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv681","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/6/929/49018414/bioinformatics_32_6_929.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/6/929/49018414/bioinformatics_32_6_929.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101819290","display_name":"Michael Richter","orcid":"https://orcid.org/0000-0001-8702-4416"},"institutions":[{"id":"https://openalex.org/I4210105988","display_name":"Ribocon (Germany)","ror":"https://ror.org/01gdx5384","country_code":"DE","type":"company","lineage":["https://openalex.org/I4210105988"]},{"id":"https://openalex.org/I4210118720","display_name":"Fahrenheit (Germany)","ror":"https://ror.org/02b08tk40","country_code":"DE","type":"company","lineage":["https://openalex.org/I4210118720"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Michael Richter","raw_affiliation_strings":["1 Ribocon GmbH, Fahrenheitstra\u00dfe. 1, 28359 Bremen, Germany,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Ribocon GmbH, Fahrenheitstra\u00dfe. 1, 28359 Bremen, Germany,","institution_ids":["https://openalex.org/I4210105988","https://openalex.org/I4210118720"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064105551","display_name":"Ramon Rossell\u00f3\u2010M\u00f3ra","orcid":"https://orcid.org/0000-0001-8253-3107"},"institutions":[{"id":"https://openalex.org/I4210116941","display_name":"Mediterranean Institute for Advanced Studies","ror":"https://ror.org/02e9dby02","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210116941","https://openalex.org/I50441567"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ramon Rossell\u00f3-M\u00f3ra","raw_affiliation_strings":["2 Marine Microbiology Group, Mediterranean Institute for Advanced Studies, C/ Miquel Marqu\u00e9s, 21, 07190, Esporles, Spain,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2 Marine Microbiology Group, Mediterranean Institute for Advanced Studies, C/ Miquel Marqu\u00e9s, 21, 07190, Esporles, Spain,","institution_ids":["https://openalex.org/I4210116941"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091470163","display_name":"Frank Oliver Gl\u00f6ckner","orcid":"https://orcid.org/0000-0001-8528-9023"},"institutions":[{"id":"https://openalex.org/I193619901","display_name":"Constructor University","ror":"https://ror.org/02yrs2n53","country_code":"DE","type":"education","lineage":["https://openalex.org/I193619901"]},{"id":"https://openalex.org/I4210103014","display_name":"Max Planck Institute for Marine Microbiology","ror":"https://ror.org/02385fa51","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210103014"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Frank Oliver Gl\u00f6ckner","raw_affiliation_strings":["3 Max Planck Institute for Marine Microbiology, Microbial Genomics and Bioinformatics Research Group, Celsiusstra\u00dfe 1, 28359 Bremen, Germany and","4 Jacobs University gGmbH Bremen, Department of Life Sciences and Chemistry, Campus Ring 1, 28759 Bremen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"3 Max Planck Institute for Marine Microbiology, Microbial Genomics and Bioinformatics Research Group, Celsiusstra\u00dfe 1, 28359 Bremen, Germany and","institution_ids":["https://openalex.org/I4210103014"]},{"raw_affiliation_string":"4 Jacobs University gGmbH Bremen, Department of Life Sciences and Chemistry, Campus Ring 1, 28759 Bremen, Germany","institution_ids":["https://openalex.org/I193619901"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040031141","display_name":"J\u00f6rg Peplies","orcid":"https://orcid.org/0000-0001-6154-4886"},"institutions":[{"id":"https://openalex.org/I4210105988","display_name":"Ribocon (Germany)","ror":"https://ror.org/01gdx5384","country_code":"DE","type":"company","lineage":["https://openalex.org/I4210105988"]},{"id":"https://openalex.org/I4210118720","display_name":"Fahrenheit (Germany)","ror":"https://ror.org/02b08tk40","country_code":"DE","type":"company","lineage":["https://openalex.org/I4210118720"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"J\u00f6rg Peplies","raw_affiliation_strings":["1 Ribocon GmbH, Fahrenheitstra\u00dfe. 1, 28359 Bremen, Germany,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Ribocon GmbH, Fahrenheitstra\u00dfe. 1, 28359 Bremen, Germany,","institution_ids":["https://openalex.org/I4210105988","https://openalex.org/I4210118720"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5101819290"],"corresponding_institution_ids":["https://openalex.org/I4210105988","https://openalex.org/I4210118720"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":38.104,"has_fulltext":true,"cited_by_count":2921,"citation_normalized_percentile":{"value":0.99891712,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"32","issue":"6","first_page":"929","last_page":"931"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9327999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9327999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.00839999970048666,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.0044999998062849045,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7577760219573975},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.570862889289856},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.5510424375534058},{"id":"https://openalex.org/keywords/circumscription","display_name":"Circumscription","score":0.5457096695899963},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.488800972700119},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4462859034538269},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4419502913951874},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.4101712703704834},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3415732979774475},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2593514323234558},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.21571451425552368},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.18307361006736755},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.12914758920669556},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09402391314506531}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7577760219573975},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.570862889289856},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.5510424375534058},{"id":"https://openalex.org/C62360110","wikidata":"https://www.wikidata.org/wiki/Q96777007","display_name":"Circumscription","level":2,"score":0.5457096695899963},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.488800972700119},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4462859034538269},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4419502913951874},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.4101712703704834},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3415732979774475},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2593514323234558},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.21571451425552368},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.18307361006736755},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.12914758920669556},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09402391314506531}],"mesh":[{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011387","descriptor_name":"Prokaryotic Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011387","descriptor_name":"Prokaryotic Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011387","descriptor_name":"Prokaryotic Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/bioinformatics/btv681","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv681","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/6/929/49018414/bioinformatics_32_6_929.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26576653","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26576653","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:digital.csic.es:10261/152499","is_oa":false,"landing_page_url":"http://hdl.handle.net/10261/152499","pdf_url":null,"source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"art\u00edculo"},{"id":"pmh:oai:escidoc.org:escidoc:2484017","is_oa":false,"landing_page_url":"http://hdl.handle.net/21.11116/0000-0001-C31D-3","pdf_url":null,"source":{"id":"https://openalex.org/S7407052962","display_name":"Max Planck Digital Library","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:5027273","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5939971","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/6/929","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/6/929","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pure.mpg.de:item_2484017","is_oa":true,"landing_page_url":"https://hdl.handle.net/21.11116/0000-0001-C31D-3","pdf_url":null,"source":{"id":"https://openalex.org/S4306400654","display_name":"MPG.PuRe (Max Planck Society)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv681","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv681","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/6/929/49018414/bioinformatics_32_6_929.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.550000011920929,"display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G3120788038","display_name":"Marine Microorganisms: Cultivation Methods for Improving their Biotechnological Applications","funder_award_id":"311975","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3829048491","display_name":null,"funder_award_id":"FP7/2007-2013","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5593277320","display_name":null,"funder_award_id":"2007-2013","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5702163051","display_name":null,"funder_award_id":"FP7/2007","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2175094144.pdf","grobid_xml":"https://content.openalex.org/works/W2175094144.grobid-xml"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W2028513472","https://openalex.org/W2036562529","https://openalex.org/W2076027587","https://openalex.org/W2079222081","https://openalex.org/W2095513921","https://openalex.org/W2097477547","https://openalex.org/W2098969756","https://openalex.org/W2107282968","https://openalex.org/W2116206245","https://openalex.org/W2119888547","https://openalex.org/W2127036970","https://openalex.org/W2142678478","https://openalex.org/W2158714788"],"related_works":["https://openalex.org/W2097297915","https://openalex.org/W1505443365","https://openalex.org/W1279140112","https://openalex.org/W1792738922","https://openalex.org/W1998363560","https://openalex.org/W2039438726","https://openalex.org/W54673468","https://openalex.org/W144271035","https://openalex.org/W2909040123","https://openalex.org/W4234342421"],"abstract_inverted_index":{"UNLABELLED:":[0],"JSpecies":[1],"Web":[2],"Server":[3],"(JSpeciesWS)":[4],"is":[5,145],"a":[6,21,61,74,126],"user-friendly":[7],"online":[8],"service":[9,34,108],"for":[10],"in":[11,25,133],"silico":[12],"calculating":[13],"the":[14,26,36,103,119,134,137],"extent":[15],"of":[16,28,53,136],"identity":[17,39],"between":[18],"two":[19,111],"genomes,":[20],"parameter":[22],"routinely":[23],"used":[24],"process":[27],"polyphasic":[29],"microbial":[30],"species":[31,120],"circumscription.":[32],"The":[33,107],"measures":[35],"average":[37],"nucleotide":[38],"(ANI)":[40],"based":[41],"on":[42],"BLAST+":[43],"(ANIb)":[44],"and":[45,86,97,123],"MUMmer":[46],"(ANIm),":[47],"as":[48,50,125],"well":[49],"correlation":[51],"indexes":[52],"tetra-nucleotide":[54],"signatures":[55],"(Tetra).":[56],"In":[57],"addition,":[58],"it":[59],"provides":[60],"Tetra":[62],"Correlation":[63],"Search":[64],"function,":[65],"which":[66],"allows":[67],"to":[68,129],"rapidly":[69],"compare":[70],"selected":[71,101],"genomes":[72,93,112,132],"against":[73],"continuously":[75],"updated":[76],"reference":[77,105],"database":[78],"with":[79],"currently":[80],"about":[81],"32":[82],"000":[83],"published":[84],"whole":[85],"draft":[87],"genome":[88],"sequences.":[89],"For":[90],"comparison,":[91],"own":[92],"can":[94,99],"be":[95,100],"uploaded":[96],"references":[98],"from":[102],"JSpeciesWS":[104,144],"database.":[106],"indicates":[109],"whether":[110],"share":[113],"genomic":[114],"identities":[115],"above":[116],"or":[117],"below":[118],"embracing":[121],"thresholds,":[122],"serves":[124],"fast":[127],"way":[128],"allocate":[130],"unknown":[131],"frame":[135],"hitherto":[138],"sequenced":[139],"species.":[140],"AVAILABILITY":[141],"AND":[142],"IMPLEMENTATION:":[143],"available":[146,154],"at":[147,155],"http://jspecies.ribohost.com/jspeciesws":[148],"SUPPLEMENTARY":[149],"INFORMATION:":[150],"Supplementary":[151],"data":[152],"are":[153],"Bioinformatics":[156],"online.":[157],"CONTACT:":[158],"mrichter@ribocon.com.":[159]},"counts_by_year":[{"year":2026,"cited_by_count":189},{"year":2025,"cited_by_count":379},{"year":2024,"cited_by_count":392},{"year":2023,"cited_by_count":362},{"year":2022,"cited_by_count":370},{"year":2021,"cited_by_count":374},{"year":2020,"cited_by_count":314},{"year":2019,"cited_by_count":285},{"year":2018,"cited_by_count":160},{"year":2017,"cited_by_count":70},{"year":2016,"cited_by_count":23},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-06-23T13:55:30.953635","created_date":"2025-10-10T00:00:00"}