{"id":"https://openalex.org/W2173603050","doi":"https://doi.org/10.1093/bioinformatics/btv680","title":"Analyzing synergistic and non-synergistic interactions in signalling pathways using Boolean Nested Effect Models","display_name":"Analyzing synergistic and non-synergistic interactions in signalling pathways using Boolean Nested Effect Models","publication_year":2015,"publication_date":"2015-11-17","ids":{"openalex":"https://openalex.org/W2173603050","doi":"https://doi.org/10.1093/bioinformatics/btv680","mag":"2173603050","pmid":"https://pubmed.ncbi.nlm.nih.gov/26581413"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv680","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv680","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/6/893/49018328/bioinformatics_32_6_893.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/6/893/49018328/bioinformatics_32_6_893.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029725058","display_name":"Martin Pirkl","orcid":"https://orcid.org/0000-0002-6986-0813"},"institutions":[{"id":"https://openalex.org/I60668342","display_name":"University of Regensburg","ror":"https://ror.org/01eezs655","country_code":"DE","type":"education","lineage":["https://openalex.org/I60668342"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Martin Pirkl","raw_affiliation_strings":["1 Statistical Bioinformatics Department, Institute of Functional Genomics, University of Regensburg, 93053 Regensburg and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Statistical Bioinformatics Department, Institute of Functional Genomics, University of Regensburg, 93053 Regensburg and","institution_ids":["https://openalex.org/I60668342"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049468290","display_name":"Elisabeth Hand","orcid":null},"institutions":[{"id":"https://openalex.org/I74656192","display_name":"University of G\u00f6ttingen","ror":"https://ror.org/01y9bpm73","country_code":"DE","type":"education","lineage":["https://openalex.org/I74656192"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Elisabeth Hand","raw_affiliation_strings":["2 Department of Haematology and Oncology, University Medical Centre of the Georg-August University of G\u00f6ttingen, 37073 G\u00f6ttingen"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2 Department of Haematology and Oncology, University Medical Centre of the Georg-August University of G\u00f6ttingen, 37073 G\u00f6ttingen","institution_ids":["https://openalex.org/I74656192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089489874","display_name":"Dieter Kube","orcid":null},"institutions":[{"id":"https://openalex.org/I74656192","display_name":"University of G\u00f6ttingen","ror":"https://ror.org/01y9bpm73","country_code":"DE","type":"education","lineage":["https://openalex.org/I74656192"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Dieter Kube","raw_affiliation_strings":["2 Department of Haematology and Oncology, University Medical Centre of the Georg-August University of G\u00f6ttingen, 37073 G\u00f6ttingen"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2 Department of Haematology and Oncology, University Medical Centre of the Georg-August University of G\u00f6ttingen, 37073 G\u00f6ttingen","institution_ids":["https://openalex.org/I74656192"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003217898","display_name":"Rainer Spang","orcid":"https://orcid.org/0000-0002-1326-4297"},"institutions":[{"id":"https://openalex.org/I60668342","display_name":"University of Regensburg","ror":"https://ror.org/01eezs655","country_code":"DE","type":"education","lineage":["https://openalex.org/I60668342"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Rainer Spang","raw_affiliation_strings":["1 Statistical Bioinformatics Department, Institute of Functional Genomics, University of Regensburg, 93053 Regensburg and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Statistical Bioinformatics Department, Institute of Functional Genomics, University of Regensburg, 93053 Regensburg and","institution_ids":["https://openalex.org/I60668342"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5003217898","https://openalex.org/A5029725058"],"corresponding_institution_ids":["https://openalex.org/I60668342"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.3782,"has_fulltext":true,"cited_by_count":25,"citation_normalized_percentile":{"value":0.80893,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"32","issue":"6","first_page":"893","last_page":"900"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.8680999875068665,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.8680999875068665,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.11400000005960464,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.0019000000320374966,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/signalling","display_name":"Signalling","score":0.8014339208602905},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5919932126998901},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5145675539970398},{"id":"https://openalex.org/keywords/downstream","display_name":"Downstream (manufacturing)","score":0.5113048553466797},{"id":"https://openalex.org/keywords/boolean-network","display_name":"Boolean network","score":0.4376312792301178},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3836092948913574},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.36218082904815674},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.26746666431427},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.20943954586982727},{"id":"https://openalex.org/keywords/boolean-function","display_name":"Boolean function","score":0.16784217953681946}],"concepts":[{"id":"https://openalex.org/C39743133","wikidata":"https://www.wikidata.org/wiki/Q3262595","display_name":"Signalling","level":2,"score":0.8014339208602905},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5919932126998901},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5145675539970398},{"id":"https://openalex.org/C2776207758","wikidata":"https://www.wikidata.org/wiki/Q5303302","display_name":"Downstream (manufacturing)","level":2,"score":0.5113048553466797},{"id":"https://openalex.org/C134444547","wikidata":"https://www.wikidata.org/wiki/Q585230","display_name":"Boolean network","level":3,"score":0.4376312792301178},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3836092948913574},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.36218082904815674},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.26746666431427},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.20943954586982727},{"id":"https://openalex.org/C187455244","wikidata":"https://www.wikidata.org/wiki/Q942353","display_name":"Boolean function","level":2,"score":0.16784217953681946},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019869","descriptor_name":"Phosphatidylinositol 3-Kinases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019869","descriptor_name":"Phosphatidylinositol 3-Kinases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019869","descriptor_name":"Phosphatidylinositol 3-Kinases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019869","descriptor_name":"Phosphatidylinositol 3-Kinases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1093/bioinformatics/btv680","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv680","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/6/893/49018328/bioinformatics_32_6_893.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26581413","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26581413","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:epub.uni-regensburg.de:32910","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401229","display_name":"University of Regensburg Publication Server (University of Regensburg)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I60668342","host_organization_name":"University of Regensburg","host_organization_lineage":["https://openalex.org/I60668342"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:5027272","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5939970","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:goescholar:1/13405","is_oa":true,"landing_page_url":"http://resolver.sub.uni-goettingen.de/purl?gs-1/13405","pdf_url":null,"source":{"id":"https://openalex.org/S4306401634","display_name":"GoeScholar  The Publication Server of the Georg-August-Universit\u00e4t G\u00f6ttingen (Georg-August-Universit\u00e4t G\u00f6ttingen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210122495","host_organization_name":"Asklepios Klinik St. Georg","host_organization_lineage":["https://openalex.org/I4210122495"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"journalArticle"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/6/893","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/6/893","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:publications.goettingen-research-online.de:2/41107","is_oa":true,"landing_page_url":"https://resolver.sub.uni-goettingen.de/purl?gro-2/41107","pdf_url":null,"source":{"id":"https://openalex.org/S4306401634","display_name":"GoeScholar  The Publication Server of the Georg-August-Universit\u00e4t G\u00f6ttingen (Georg-August-Universit\u00e4t G\u00f6ttingen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210122495","host_organization_name":"Asklepios Klinik St. Georg","host_organization_lineage":["https://openalex.org/I4210122495"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"journal_article"},{"id":"doi:10.5283/epub.32910","is_oa":true,"landing_page_url":"https://doi.org/10.5283/epub.32910","pdf_url":null,"source":{"id":"https://openalex.org/S4306401229","display_name":"University of Regensburg Publication Server (University of Regensburg)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I60668342","host_organization_name":"University of Regensburg","host_organization_lineage":["https://openalex.org/I60668342"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv680","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv680","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/6/893/49018328/bioinformatics_32_6_893.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2173603050.pdf","grobid_xml":"https://content.openalex.org/works/W2173603050.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W1609859996","https://openalex.org/W1971224531","https://openalex.org/W2017671390","https://openalex.org/W2019136808","https://openalex.org/W2048421208","https://openalex.org/W2051708324","https://openalex.org/W2053252892","https://openalex.org/W2054074945","https://openalex.org/W2067630156","https://openalex.org/W2069412330","https://openalex.org/W2073307618","https://openalex.org/W2084005781","https://openalex.org/W2085187495","https://openalex.org/W2088549138","https://openalex.org/W2116382435","https://openalex.org/W2117994680","https://openalex.org/W2119541898","https://openalex.org/W2119778725","https://openalex.org/W2124876377","https://openalex.org/W2126276987","https://openalex.org/W2127020923","https://openalex.org/W2144526849","https://openalex.org/W2148780239","https://openalex.org/W2155573334","https://openalex.org/W2158730743","https://openalex.org/W2163296115","https://openalex.org/W2167334954","https://openalex.org/W2241711086","https://openalex.org/W2325535142","https://openalex.org/W2467476999","https://openalex.org/W2611370172","https://openalex.org/W3006419771","https://openalex.org/W3098183178","https://openalex.org/W3099289621","https://openalex.org/W3104952140","https://openalex.org/W6683167872"],"related_works":["https://openalex.org/W1583765404","https://openalex.org/W4214653257","https://openalex.org/W2105336199","https://openalex.org/W2055438207","https://openalex.org/W4253582332","https://openalex.org/W4385417763","https://openalex.org/W3031517862","https://openalex.org/W4385568524","https://openalex.org/W100451528","https://openalex.org/W2150695558"],"abstract_inverted_index":{"MOTIVATION:":[0],"Understanding":[1],"the":[2,13,49,69,75,94,100,156],"structure":[3,51],"and":[4,131],"interplay":[5],"of":[6,12,27,56,71,77,96,103],"cellular":[7],"signalling":[8,23,66,72,104,128,151],"pathways":[9],"is":[10,34,144,153],"one":[11],"great":[14],"challenges":[15],"in":[16,107,119,134],"molecular":[17],"biology.":[18],"Boolean":[19,87,108],"Networks":[20],"can":[21],"infer":[22],"networks":[24],"from":[25,53],"observations":[26],"protein":[28,38],"activation.":[29],"In":[30],"situations":[31],"where":[32],"it":[33],"difficult":[35],"to":[36],"assess":[37],"activation":[39,76],"directly,":[40],"Nested":[41,61,88],"Effect":[42,62,89],"Models":[43,63,90],"are":[44,171],"an":[45],"alternative.":[46],"They":[47],"derive":[48],"network":[50],"indirectly":[52],"downstream":[54,97],"effects":[55,98],"pathway":[57,105],"perturbations.":[58],"To":[59],"date,":[60],"cannot":[64],"resolve":[65,126],"details":[67],"like":[68],"formation":[70],"complexes":[73],"or":[74],"proteins":[78],"by":[79],"multiple":[80],"alternative":[81],"input":[82],"signals.":[83],"Here":[84],"we":[85,124],"introduce":[86],"(B-NEM).":[91],"B-NEMs":[92,114],"combine":[93],"use":[95],"with":[99],"higher":[101],"resolution":[102],"structures":[106],"Networks.":[109],"RESULTS:":[110],"We":[111],"show":[112],"that":[113],"accurately":[115],"reconstruct":[116],"signal":[117],"flows":[118],"simulated":[120],"data.":[121],"Using":[122],"B-NEM":[123],"then":[125],"BCR":[127,150],"via":[129],"PI3K":[130],"TAK1":[132],"kinases":[133],"BL2":[135],"lymphoma":[136],"cell":[137],"lines.":[138],"AVAILABILITY":[139],"AND":[140],"IMPLEMENTATION:":[141],"R":[142],"code":[143],"available":[145,154,172],"at":[146,155,173],"https://github.com/MartinFXP/B-NEM":[147],"(github).":[148],"The":[149],"dataset":[152],"GEO":[157],"database":[158],"(http://www.ncbi.nlm.nih.gov/geo/)":[159],"through":[160],"accession":[161],"number":[162],"GSE68761.":[163],"CONTACT:":[164],"martin-franz-xaver.pirkl@ukr.de,":[165],"Rainer.Spang@ukr.de":[166],"SUPPLEMENTARY":[167],"INFORMATION:":[168],"Supplementary":[169],"data":[170],"Bioinformatics":[174],"online.":[175]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":3}],"updated_date":"2026-08-09T07:27:16.801131","created_date":"2016-06-24T00:00:00"}
