{"id":"https://openalex.org/W794840634","doi":"https://doi.org/10.1093/bioinformatics/btv670","title":"Optimal seed solver: optimizing seed selection in read mapping","display_name":"Optimal seed solver: optimizing seed selection in read mapping","publication_year":2015,"publication_date":"2015-11-14","ids":{"openalex":"https://openalex.org/W794840634","doi":"https://doi.org/10.1093/bioinformatics/btv670","mag":"794840634","pmid":"https://pubmed.ncbi.nlm.nih.gov/26568624"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv670","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv670","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/11/1632/49019228/bioinformatics_32_11_1632.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/11/1632/49019228/bioinformatics_32_11_1632.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087925176","display_name":"Hongyi Xin","orcid":"https://orcid.org/0000-0003-2864-7386"},"institutions":[{"id":"https://openalex.org/I4210156583","display_name":"Laboratoire d'Informatique de Paris-Nord","ror":"https://ror.org/05g1zjw44","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210091279","https://openalex.org/I4210156583","https://openalex.org/I4210159245"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Hongyi Xin","raw_affiliation_strings":["1 Computer Science Department,"],"affiliations":[{"raw_affiliation_string":"1 Computer Science Department,","institution_ids":["https://openalex.org/I4210156583"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003632372","display_name":"Sunny Nahar","orcid":null},"institutions":[{"id":"https://openalex.org/I4210156583","display_name":"Laboratoire d'Informatique de Paris-Nord","ror":"https://ror.org/05g1zjw44","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210091279","https://openalex.org/I4210156583","https://openalex.org/I4210159245"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Sunny Nahar","raw_affiliation_strings":["1 Computer Science Department,"],"affiliations":[{"raw_affiliation_string":"1 Computer Science Department,","institution_ids":["https://openalex.org/I4210156583"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109191848","display_name":"Richard Zhu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210156583","display_name":"Laboratoire d'Informatique de Paris-Nord","ror":"https://ror.org/05g1zjw44","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210091279","https://openalex.org/I4210156583","https://openalex.org/I4210159245"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Richard Zhu","raw_affiliation_strings":["1 Computer Science Department,"],"affiliations":[{"raw_affiliation_string":"1 Computer Science Department,","institution_ids":["https://openalex.org/I4210156583"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083366663","display_name":"John Emmons","orcid":null},"institutions":[{"id":"https://openalex.org/I204465549","display_name":"Washington University in St. Louis","ror":"https://ror.org/01yc7t268","country_code":"US","type":"education","lineage":["https://openalex.org/I204465549"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John Emmons","raw_affiliation_strings":["5 Department of Computer Science and Engineering, Washington University, St. Louis, MO 63130, USA"],"affiliations":[{"raw_affiliation_string":"5 Department of Computer Science and Engineering, Washington University, St. Louis, MO 63130, USA","institution_ids":["https://openalex.org/I204465549"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007585346","display_name":"Gennady Pekhimenko","orcid":"https://orcid.org/0000-0002-3839-0919"},"institutions":[{"id":"https://openalex.org/I4210156583","display_name":"Laboratoire d'Informatique de Paris-Nord","ror":"https://ror.org/05g1zjw44","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210091279","https://openalex.org/I4210156583","https://openalex.org/I4210159245"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Gennady Pekhimenko","raw_affiliation_strings":["1 Computer Science Department,"],"affiliations":[{"raw_affiliation_string":"1 Computer Science Department,","institution_ids":["https://openalex.org/I4210156583"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113653378","display_name":"Carl Kingsford","orcid":null},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carl Kingsford","raw_affiliation_strings":["3 Computational Biology Department, Carnegie Mellon University, Pittsburgh, PA 15213, USA,"],"affiliations":[{"raw_affiliation_string":"3 Computational Biology Department, Carnegie Mellon University, Pittsburgh, PA 15213, USA,","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074885623","display_name":"Can Alkan","orcid":"https://orcid.org/0000-0002-5443-0706"},"institutions":[{"id":"https://openalex.org/I168864056","display_name":"Bilkent University","ror":"https://ror.org/02vh8a032","country_code":"TR","type":"education","lineage":["https://openalex.org/I168864056"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Can Alkan","raw_affiliation_strings":["4 Department of Computer Engineering, Bilkent University, Bilkent, Ankara 06800, Turkey and"],"affiliations":[{"raw_affiliation_string":"4 Department of Computer Engineering, Bilkent University, Bilkent, Ankara 06800, Turkey and","institution_ids":["https://openalex.org/I168864056"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5050695684","display_name":"Onur Mutlu","orcid":"https://orcid.org/0000-0002-0075-2312"},"institutions":[{"id":"https://openalex.org/I4210156583","display_name":"Laboratoire d'Informatique de Paris-Nord","ror":"https://ror.org/05g1zjw44","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210091279","https://openalex.org/I4210156583","https://openalex.org/I4210159245"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Onur Mutlu","raw_affiliation_strings":["1 Computer Science Department,","2 Department of Electrical and Computer Engineering,"],"affiliations":[{"raw_affiliation_string":"1 Computer Science Department,","institution_ids":["https://openalex.org/I4210156583"]},{"raw_affiliation_string":"2 Department of Electrical and Computer Engineering,","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5087925176"],"corresponding_institution_ids":["https://openalex.org/I4210156583"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":4.9128,"has_fulltext":false,"cited_by_count":43,"citation_normalized_percentile":{"value":0.95181307,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"32","issue":"11","first_page":"1632","last_page":"1642"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/solver","display_name":"Solver","score":0.8146989345550537},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6538648009300232},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.6450847387313843},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.6106786727905273},{"id":"https://openalex.org/keywords/reduction","display_name":"Reduction (mathematics)","score":0.4996652603149414},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.49534741044044495},{"id":"https://openalex.org/keywords/limit","display_name":"Limit (mathematics)","score":0.4359758496284485},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.41867300868034363},{"id":"https://openalex.org/keywords/scheme","display_name":"Scheme (mathematics)","score":0.41288429498672485},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.23960331082344055},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.16049912571907043},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.10111251473426819},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10058099031448364}],"concepts":[{"id":"https://openalex.org/C2778770139","wikidata":"https://www.wikidata.org/wiki/Q1966904","display_name":"Solver","level":2,"score":0.8146989345550537},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6538648009300232},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.6450847387313843},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.6106786727905273},{"id":"https://openalex.org/C111335779","wikidata":"https://www.wikidata.org/wiki/Q3454686","display_name":"Reduction (mathematics)","level":2,"score":0.4996652603149414},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.49534741044044495},{"id":"https://openalex.org/C151201525","wikidata":"https://www.wikidata.org/wiki/Q177239","display_name":"Limit (mathematics)","level":2,"score":0.4359758496284485},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.41867300868034363},{"id":"https://openalex.org/C77618280","wikidata":"https://www.wikidata.org/wiki/Q1155772","display_name":"Scheme (mathematics)","level":2,"score":0.41288429498672485},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.23960331082344055},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.16049912571907043},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.10111251473426819},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10058099031448364},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1093/bioinformatics/btv670","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv670","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/11/1632/49019228/bioinformatics_32_11_1632.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26568624","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26568624","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:arXiv.org:1506.08235","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1506.08235","pdf_url":"https://arxiv.org/pdf/1506.08235","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:europepmc.org:5356818","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6363230","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/11/1632","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/11/1632","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:6363230","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6363230","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:repository.bilkent.edu.tr:11693/36572","is_oa":false,"landing_page_url":"http://hdl.handle.net/11693/36572","pdf_url":null,"source":{"id":"https://openalex.org/S4306400079","display_name":"Bilkent University Institutional Repository (Bilkent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I168864056","host_organization_name":"Bilkent University","host_organization_lineage":["https://openalex.org/I168864056"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv670","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv670","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/11/1632/49019228/bioinformatics_32_11_1632.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W794840634.pdf","grobid_xml":"https://content.openalex.org/works/W794840634.grobid-xml"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W1568015765","https://openalex.org/W1828154403","https://openalex.org/W1939142881","https://openalex.org/W1982013454","https://openalex.org/W1994263888","https://openalex.org/W1997565067","https://openalex.org/W1998048394","https://openalex.org/W2013976859","https://openalex.org/W2015915218","https://openalex.org/W2025648894","https://openalex.org/W2032518018","https://openalex.org/W2037953066","https://openalex.org/W2038686775","https://openalex.org/W2058759221","https://openalex.org/W2074231493","https://openalex.org/W2087064593","https://openalex.org/W2095680943","https://openalex.org/W2096791516","https://openalex.org/W2100751585","https://openalex.org/W2114794895","https://openalex.org/W2119305840","https://openalex.org/W2121716038","https://openalex.org/W2124362779","https://openalex.org/W2128591967","https://openalex.org/W2132484969","https://openalex.org/W2133687564","https://openalex.org/W2139747296","https://openalex.org/W2151672054","https://openalex.org/W2153527981","https://openalex.org/W2155445544","https://openalex.org/W2158322625","https://openalex.org/W2161488606","https://openalex.org/W2162758337","https://openalex.org/W2166081493","https://openalex.org/W2167470356","https://openalex.org/W2170551349","https://openalex.org/W2171777347","https://openalex.org/W2885727518","https://openalex.org/W4394666350","https://openalex.org/W6640415811","https://openalex.org/W6674561012"],"related_works":["https://openalex.org/W2186864281","https://openalex.org/W4255427455","https://openalex.org/W1966025497","https://openalex.org/W68941528","https://openalex.org/W4206451355","https://openalex.org/W8322802","https://openalex.org/W314331466","https://openalex.org/W2049545441","https://openalex.org/W2389192348","https://openalex.org/W2361975388"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":13},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}