{"id":"https://openalex.org/W2287479634","doi":"https://doi.org/10.1093/bioinformatics/btv667","title":"WormExp: a web-based application for a <i>Caenorhabditis elegans</i>-specific gene expression enrichment analysis","display_name":"WormExp: a web-based application for a <i>Caenorhabditis elegans</i>-specific gene expression enrichment analysis","publication_year":2015,"publication_date":"2015-11-11","ids":{"openalex":"https://openalex.org/W2287479634","doi":"https://doi.org/10.1093/bioinformatics/btv667","mag":"2287479634","pmid":"https://pubmed.ncbi.nlm.nih.gov/26559506"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv667","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv667","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/6/943/49018247/bioinformatics_32_6_943.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/6/943/49018247/bioinformatics_32_6_943.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100706286","display_name":"Wentao Yang","orcid":"https://orcid.org/0000-0002-6108-7301"},"institutions":[{"id":"https://openalex.org/I32021983","display_name":"Christian-Albrechts-Universit\u00e4t zu Kiel","ror":"https://ror.org/04v76ef78","country_code":"DE","type":"education","lineage":["https://openalex.org/I32021983"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Wentao Yang","raw_affiliation_strings":["Evolutionary Ecology and Genetics, Zoological Institute, CAU Kiel, 24118 Kiel, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Evolutionary Ecology and Genetics, Zoological Institute, CAU Kiel, 24118 Kiel, Germany","institution_ids":["https://openalex.org/I32021983"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005182135","display_name":"Katja Dierking","orcid":"https://orcid.org/0000-0002-5129-346X"},"institutions":[{"id":"https://openalex.org/I32021983","display_name":"Christian-Albrechts-Universit\u00e4t zu Kiel","ror":"https://ror.org/04v76ef78","country_code":"DE","type":"education","lineage":["https://openalex.org/I32021983"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Katja Dierking","raw_affiliation_strings":["Evolutionary Ecology and Genetics, Zoological Institute, CAU Kiel, 24118 Kiel, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Evolutionary Ecology and Genetics, Zoological Institute, CAU Kiel, 24118 Kiel, Germany","institution_ids":["https://openalex.org/I32021983"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020027850","display_name":"Hinrich Schulenburg","orcid":"https://orcid.org/0000-0002-1413-913X"},"institutions":[{"id":"https://openalex.org/I32021983","display_name":"Christian-Albrechts-Universit\u00e4t zu Kiel","ror":"https://ror.org/04v76ef78","country_code":"DE","type":"education","lineage":["https://openalex.org/I32021983"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Hinrich Schulenburg","raw_affiliation_strings":["Evolutionary Ecology and Genetics, Zoological Institute, CAU Kiel, 24118 Kiel, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Evolutionary Ecology and Genetics, Zoological Institute, CAU Kiel, 24118 Kiel, Germany","institution_ids":["https://openalex.org/I32021983"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5020027850"],"corresponding_institution_ids":["https://openalex.org/I32021983"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.0318,"has_fulltext":true,"cited_by_count":125,"citation_normalized_percentile":{"value":0.73399015,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"32","issue":"6","first_page":"943","last_page":"945"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10676","display_name":"Genetics, Aging, and Longevity in Model Organisms","score":0.9302999973297119,"subfield":{"id":"https://openalex.org/subfields/1302","display_name":"Aging"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10676","display_name":"Genetics, Aging, and Longevity in Model Organisms","score":0.9302999973297119,"subfield":{"id":"https://openalex.org/subfields/1302","display_name":"Aging"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.04259999841451645,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.00430000014603138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/caenorhabditis-elegans","display_name":"Caenorhabditis elegans","score":0.7604373693466187},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.694316029548645},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6307728886604309},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.572375476360321},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.45032963156700134},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.41823089122772217},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.40644457936286926},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.39553382992744446},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2657439112663269}],"concepts":[{"id":"https://openalex.org/C2778944004","wikidata":"https://www.wikidata.org/wiki/Q91703","display_name":"Caenorhabditis elegans","level":3,"score":0.7604373693466187},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.694316029548645},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6307728886604309},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.572375476360321},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.45032963156700134},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.41823089122772217},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.40644457936286926},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.39553382992744446},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2657439112663269},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btv667","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv667","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/6/943/49018247/bioinformatics_32_6_943.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26559506","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26559506","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/6/943","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/6/943","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv667","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv667","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/6/943/49018247/bioinformatics_32_6_943.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G752802517","display_name":null,"funder_award_id":"SCHU 1415/8","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8609191317","display_name":null,"funder_award_id":"SCHU 1415/9","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2287479634.pdf","grobid_xml":"https://content.openalex.org/works/W2287479634.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W365514854","https://openalex.org/W2012931780","https://openalex.org/W2019044730","https://openalex.org/W2069960805","https://openalex.org/W2082607144","https://openalex.org/W2092742937","https://openalex.org/W2100471807","https://openalex.org/W2103017472","https://openalex.org/W2112466127","https://openalex.org/W2127938920","https://openalex.org/W2130410032","https://openalex.org/W2135230352","https://openalex.org/W2153804545","https://openalex.org/W2159482845","https://openalex.org/W2168546553","https://openalex.org/W2171088586","https://openalex.org/W4253759977","https://openalex.org/W4294216483"],"related_works":["https://openalex.org/W4313474347","https://openalex.org/W2993659554","https://openalex.org/W4384347930","https://openalex.org/W2183871674","https://openalex.org/W390558816","https://openalex.org/W4385516583","https://openalex.org/W978202925","https://openalex.org/W3131791460","https://openalex.org/W2356164561","https://openalex.org/W3170225129"],"abstract_inverted_index":{"MOTIVATION:":[0],"A":[1],"particular":[2],"challenge":[3],"of":[4,13,18,47,98],"the":[5,14,95,106],"current":[6],"omics":[7],"age":[8],"is":[9,26,78,92,124],"to":[10,27,80],"make":[11],"sense":[12],"inferred":[15],"differential":[16],"expression":[17,102],"genes":[19],"and":[20,49,74],"proteins.":[21],"The":[22,90],"most":[23],"common":[24],"approach":[25,91],"perform":[28],"a":[29,38,45,65,69],"gene":[30,71,88,101,113],"ontology":[31],"(GO)":[32],"enrichment":[33,75],"analysis,":[34,76],"thereby":[35],"relying":[36],"on":[37,57,94],"database":[39],"that":[40,50],"has":[41],"been":[42],"extracted":[43],"from":[44,115],"variety":[46],"organisms":[48],"can":[51],"therefore":[52],"only":[53],"yield":[54,81],"reliable":[55],"information":[56],"evolutionary":[58],"conserved":[59],"functions.":[60],"RESULTS:":[61],"We":[62],"here":[63],"present":[64],"web-based":[66],"application":[67],"for":[68,105],"taxon-specific":[70],"set":[72],"exploration":[73],"which":[77],"expected":[79],"novel":[82],"functional":[83],"insights":[84],"into":[85],"newly":[86],"determined":[87],"sets.":[89],"based":[93],"complete":[96],"collection":[97],"curated":[99],"high-throughput":[100],"data":[103,133],"sets":[104,114],"model":[107],"nematode":[108],"Caenorhabditis":[109],"elegans,":[110],"including":[111],"1786":[112],"more":[116],"than":[117],"350":[118],"studies.":[119],"AVAILABILITY":[120],"AND":[121],"IMPLEMENTATION:":[122],"WormExp":[123],"available":[125,135],"at":[126,136],"http://wormexp.zoologie.uni-kiel.de":[127],"CONTACTS:":[128],"hschulenburg@zoologie.uni-kiel.de":[129],"SUPPLEMENTARY":[130],"INFORMATION:":[131],"Supplementary":[132],"are":[134],"Bioinformatics":[137],"online.":[138]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":13},{"year":2024,"cited_by_count":17},{"year":2023,"cited_by_count":15},{"year":2022,"cited_by_count":12},{"year":2021,"cited_by_count":23},{"year":2020,"cited_by_count":23},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2016-06-24T00:00:00"}
