{"id":"https://openalex.org/W2288234278","doi":"https://doi.org/10.1093/bioinformatics/btv665","title":"Highly accurate sequence-based prediction of half-sphere exposures of amino acid residues in proteins","display_name":"Highly accurate sequence-based prediction of half-sphere exposures of amino acid residues in proteins","publication_year":2015,"publication_date":"2015-11-14","ids":{"openalex":"https://openalex.org/W2288234278","doi":"https://doi.org/10.1093/bioinformatics/btv665","mag":"2288234278","pmid":"https://pubmed.ncbi.nlm.nih.gov/26568622"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv665","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv665","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/6/843/49018315/bioinformatics_32_6_843.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/6/843/49018315/bioinformatics_32_6_843.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009103991","display_name":"Rhys Heffernan","orcid":"https://orcid.org/0000-0002-9946-1995"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Rhys Heffernan","raw_affiliation_strings":["1 Signal Processing Laboratory, School of Engineering, Griffith University, Brisbane, Australia,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Signal Processing Laboratory, School of Engineering, Griffith University, Brisbane, Australia,","institution_ids":["https://openalex.org/I11701301"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068034214","display_name":"Abdollah Dehzangi","orcid":"https://orcid.org/0000-0001-8577-0271"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]},{"id":"https://openalex.org/I126307644","display_name":"University of Iowa","ror":"https://ror.org/036jqmy94","country_code":"US","type":"education","lineage":["https://openalex.org/I126307644"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"Abdollah Dehzangi","raw_affiliation_strings":["1 Signal Processing Laboratory, School of Engineering, Griffith University, Brisbane, Australia,","2 Institute for Integrated and Intelligent Systems, Griffith University, Brisbane, Australia,","3 Medical Research Center (MRC), Department of Psychiatry, University of Iowa, Iowa City, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Signal Processing Laboratory, School of Engineering, Griffith University, Brisbane, Australia,","institution_ids":["https://openalex.org/I11701301"]},{"raw_affiliation_string":"2 Institute for Integrated and Intelligent Systems, Griffith University, Brisbane, Australia,","institution_ids":["https://openalex.org/I11701301"]},{"raw_affiliation_string":"3 Medical Research Center (MRC), Department of Psychiatry, University of Iowa, Iowa City, USA,","institution_ids":["https://openalex.org/I126307644"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040441659","display_name":"James Lyons","orcid":null},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"James Lyons","raw_affiliation_strings":["1 Signal Processing Laboratory, School of Engineering, Griffith University, Brisbane, Australia,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Signal Processing Laboratory, School of Engineering, Griffith University, Brisbane, Australia,","institution_ids":["https://openalex.org/I11701301"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046089538","display_name":"Kuldip K. Paliwal","orcid":"https://orcid.org/0000-0002-3553-3662"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Kuldip Paliwal","raw_affiliation_strings":["1 Signal Processing Laboratory, School of Engineering, Griffith University, Brisbane, Australia,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Signal Processing Laboratory, School of Engineering, Griffith University, Brisbane, Australia,","institution_ids":["https://openalex.org/I11701301"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025400322","display_name":"Alok Sharma","orcid":"https://orcid.org/0000-0002-7668-3501"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]},{"id":"https://openalex.org/I44666525","display_name":"University of the South Pacific","ror":"https://ror.org/008stv805","country_code":"FJ","type":"education","lineage":["https://openalex.org/I44666525"]}],"countries":["AU","FJ"],"is_corresponding":false,"raw_author_name":"Alok Sharma","raw_affiliation_strings":["2 Institute for Integrated and Intelligent Systems, Griffith University, Brisbane, Australia,","4 School of Engineering and Physics, University of the South Pacific, Private Mail Bag, Laucala Campus, Suva, Fiji,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2 Institute for Integrated and Intelligent Systems, Griffith University, Brisbane, Australia,","institution_ids":["https://openalex.org/I11701301"]},{"raw_affiliation_string":"4 School of Engineering and Physics, University of the South Pacific, Private Mail Bag, Laucala Campus, Suva, Fiji,","institution_ids":["https://openalex.org/I44666525"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100610288","display_name":"Jihua Wang","orcid":"https://orcid.org/0000-0002-2109-8807"},"institutions":[{"id":"https://openalex.org/I4210112540","display_name":"Institute of Biophysics","ror":"https://ror.org/01tyv8576","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112540"]},{"id":"https://openalex.org/I4210165547","display_name":"Dezhou University","ror":"https://ror.org/05mnjs436","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210165547"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jihua Wang","raw_affiliation_strings":["5 Shandong Provincial Key Laboratory of Biophysics, Institute of Biophysics, Dezhou University, Dezhou, Shandong 253023, China,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"5 Shandong Provincial Key Laboratory of Biophysics, Institute of Biophysics, Dezhou University, Dezhou, Shandong 253023, China,","institution_ids":["https://openalex.org/I4210165547","https://openalex.org/I4210112540"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038675407","display_name":"Abdul Sattar","orcid":"https://orcid.org/0000-0002-2567-2052"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Abdul Sattar","raw_affiliation_strings":["2 Institute for Integrated and Intelligent Systems, Griffith University, Brisbane, Australia,","6 National ICT Australia (NICTA), Brisbane, Australia and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2 Institute for Integrated and Intelligent Systems, Griffith University, Brisbane, Australia,","institution_ids":["https://openalex.org/I11701301"]},{"raw_affiliation_string":"6 National ICT Australia (NICTA), Brisbane, Australia and","institution_ids":["https://openalex.org/I42894916"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032724151","display_name":"Yaoqi Zhou","orcid":"https://orcid.org/0000-0002-9958-5699"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]},{"id":"https://openalex.org/I4210112540","display_name":"Institute of Biophysics","ror":"https://ror.org/01tyv8576","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112540"]},{"id":"https://openalex.org/I4210165547","display_name":"Dezhou University","ror":"https://ror.org/05mnjs436","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210165547"]}],"countries":["AU","CN"],"is_corresponding":false,"raw_author_name":"Yaoqi Zhou","raw_affiliation_strings":["5 Shandong Provincial Key Laboratory of Biophysics, Institute of Biophysics, Dezhou University, Dezhou, Shandong 253023, China,","7 Institute for Glycomics and School of Information and Communication Technique, Griffith University, Parklands Dr. Southport, QLD 4222, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"5 Shandong Provincial Key Laboratory of Biophysics, Institute of Biophysics, Dezhou University, Dezhou, Shandong 253023, China,","institution_ids":["https://openalex.org/I4210165547","https://openalex.org/I4210112540"]},{"raw_affiliation_string":"7 Institute for Glycomics and School of Information and Communication Technique, Griffith University, Parklands Dr. Southport, QLD 4222, Australia","institution_ids":["https://openalex.org/I11701301"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023539493","display_name":"Yuedong Yang","orcid":"https://orcid.org/0000-0002-6782-2813"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Yuedong Yang","raw_affiliation_strings":["7 Institute for Glycomics and School of Information and Communication Technique, Griffith University, Parklands Dr. Southport, QLD 4222, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"7 Institute for Glycomics and School of Information and Communication Technique, Griffith University, Parklands Dr. Southport, QLD 4222, Australia","institution_ids":["https://openalex.org/I11701301"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5009103991"],"corresponding_institution_ids":["https://openalex.org/I11701301"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":5.2701,"has_fulltext":true,"cited_by_count":101,"citation_normalized_percentile":{"value":0.96355035,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":100},"biblio":{"volume":"32","issue":"6","first_page":"843","last_page":"849"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.92330002784729,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.92330002784729,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.03060000017285347,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.007899999618530273,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6394282579421997},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.5234767198562622},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.456348717212677},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.43963176012039185},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.30448460578918457},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2736627459526062},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.26575523614883423},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07449564337730408}],"concepts":[{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6394282579421997},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.5234767198562622},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.456348717212677},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.43963176012039185},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.30448460578918457},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2736627459526062},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.26575523614883423},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07449564337730408}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012997","descriptor_name":"Solvents","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012997","descriptor_name":"Solvents","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012997","descriptor_name":"Solvents","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btv665","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv665","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/6/843/49018315/bioinformatics_32_6_843.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26568622","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26568622","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:espace.library.uq.edu.au:UQ:45d44a0","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402388","display_name":"Queensland's institutional digital repository (The University of Queensland)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165143802","host_organization_name":"The University of Queensland","host_organization_lineage":["https://openalex.org/I165143802"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/6/843","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/6/843","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:research-repository.griffith.edu.au:10072/125244","is_oa":false,"landing_page_url":"http://hdl.handle.net/10072/125244","pdf_url":null,"source":{"id":"https://openalex.org/S4306402548","display_name":"Griffith Research Online (Griffith University, Queensland, Australia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I11701301","host_organization_name":"Griffith University","host_organization_lineage":["https://openalex.org/I11701301"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv665","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv665","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/6/843/49018315/bioinformatics_32_6_843.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1658842158","display_name":null,"funder_award_id":"1083450","funder_id":"https://openalex.org/F4320334705","funder_display_name":"National Health and Medical Research Council"},{"id":"https://openalex.org/G5155094931","display_name":null,"funder_award_id":"61271378","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7197077966","display_name":null,"funder_award_id":"LE150100161","funder_id":"https://openalex.org/F4320334705","funder_display_name":"National Health and Medical Research Council"},{"id":"https://openalex.org/G8351842556","display_name":null,"funder_award_id":"1059775","funder_id":"https://openalex.org/F4320334705","funder_display_name":"National Health and Medical Research Council"}],"funders":[{"id":"https://openalex.org/F4320315813","display_name":"Queensland Cyber Infrastructure Foundation","ror":"https://ror.org/03sd43014"},{"id":"https://openalex.org/F4320320981","display_name":"Griffith University","ror":"https://ror.org/02sc3r913"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334705","display_name":"National Health and Medical Research Council","ror":"https://ror.org/011kf5r70"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2288234278.pdf","grobid_xml":"https://content.openalex.org/works/W2288234278.grobid-xml"},"referenced_works_count":47,"referenced_works":["https://openalex.org/W1508825410","https://openalex.org/W1584888540","https://openalex.org/W1596947964","https://openalex.org/W1964655247","https://openalex.org/W1978304263","https://openalex.org/W1981387027","https://openalex.org/W1982959183","https://openalex.org/W1992116297","https://openalex.org/W2000036186","https://openalex.org/W2004360551","https://openalex.org/W2011402521","https://openalex.org/W2013507130","https://openalex.org/W2019574765","https://openalex.org/W2024035237","https://openalex.org/W2031198583","https://openalex.org/W2050625197","https://openalex.org/W2051210555","https://openalex.org/W2076063813","https://openalex.org/W2087518504","https://openalex.org/W2091194233","https://openalex.org/W2096495474","https://openalex.org/W2099672241","https://openalex.org/W2099886875","https://openalex.org/W2100316154","https://openalex.org/W2100908214","https://openalex.org/W2106116715","https://openalex.org/W2108212798","https://openalex.org/W2108508060","https://openalex.org/W2110974733","https://openalex.org/W2111705855","https://openalex.org/W2113944588","https://openalex.org/W2122376908","https://openalex.org/W2133812171","https://openalex.org/W2141624700","https://openalex.org/W2146084306","https://openalex.org/W2146496445","https://openalex.org/W2153153865","https://openalex.org/W2154595610","https://openalex.org/W2158714788","https://openalex.org/W2158899863","https://openalex.org/W2161005920","https://openalex.org/W2187281534","https://openalex.org/W2546191734","https://openalex.org/W2613634265","https://openalex.org/W3101075981","https://openalex.org/W6646297992","https://openalex.org/W6686999899"],"related_works":["https://openalex.org/W4387497383","https://openalex.org/W2948807893","https://openalex.org/W2778153218","https://openalex.org/W2748952813","https://openalex.org/W1531601525","https://openalex.org/W2078814861","https://openalex.org/W2527526854","https://openalex.org/W1976181487","https://openalex.org/W1986764834","https://openalex.org/W657579294"],"abstract_inverted_index":{"MOTIVATION:":[0],"Solvent":[1,22],"exposure":[2,23,51,89],"of":[3,7,184,228],"amino":[4],"acid":[5],"residues":[6],"proteins":[8,106,186],"plays":[9],"an":[10,45],"important":[11],"role":[12],"in":[13,95],"understanding":[14],"and":[15,20,39,61,93,124,142,154,163,174,213,235],"predicting":[16,139],"protein":[17,80,232],"structure,":[18],"function":[19,240],"interactions.":[21],"can":[24],"be":[25],"characterized":[26],"by":[27,55,206],"several":[28],"measures":[29],"including":[30],"solvent":[31,88],"accessible":[32],"surface":[33],"area":[34],"(ASA),":[35],"residue":[36,207],"depth":[37],"(RD)":[38],"contact":[40,47,177],"numbers":[41],"(CN).":[42],"More":[43],"recently,":[44],"orientation-dependent":[46],"number":[48],"called":[49],"half-sphere":[50],"(HSE)":[52],"was":[53,82],"introduced":[54],"separating":[56],"the":[57,68,87,180,203,225],"contacts":[58],"within":[59],"upper":[60,168],"down":[62,172],"half":[63],"spheres":[64],"defined":[65],"according":[66],"to":[67,84,121,128,202],"C\u03b1-C\u03b2":[69],"(HSE\u03b2)":[70],"vector":[71],"or":[72,253],"neighboring":[73],"C\u03b1-C\u03b1":[74],"vectors":[75],"(HSE\u03b1).":[76],"HSE\u03b1":[77,123,141,195,230],"calculated":[78],"from":[79],"structures":[81],"found":[83],"better":[85],"describe":[86],"over":[90],"ASA,":[91],"CN":[92],"RD":[94],"many":[96],"applications.":[97],"Thus,":[98],"a":[99,135,147,197],"sequence-based":[100],"prediction":[101,234],"is":[102,118,247],"desirable,":[103],"as":[104,237,239],"most":[105],"do":[107],"not":[108],"have":[109],"experimentally":[110],"determined":[111],"structures.":[112],"To":[113],"our":[114],"best":[115],"knowledge,":[116],"there":[117],"no":[119],"method":[120,127,137,246],"predict":[122,129],"only":[125],"one":[126],"HSE\u03b2.":[130],"RESULTS:":[131],"This":[132],"study":[133],"developed":[134],"novel":[136],"for":[138,150,167,171,176,179,231],"both":[140],"HSE\u03b2":[143,165,211],"(SPIDER-HSE)":[144],"that":[145],"achieved":[146],"consistent":[148],"performance":[149],"10-fold":[151],"cross":[152],"validation":[153],"two":[155],"independent":[156,181],"tests.":[157],"The":[158,216,245],"correlation":[159,199],"coefficients":[160],"between":[161],"predicted":[162,194,210,229],"measured":[164],"(0.73":[166],"sphere,":[169],"0.69":[170],"sphere":[173],"0.76":[175],"numbers)":[178],"test":[182],"set":[183],"1199":[185],"are":[187,259],"significantly":[188],"higher":[189,198],"than":[190,209],"existing":[191],"methods.":[192],"Moreover,":[193],"has":[196],"coefficient":[200],"(0.46)":[201],"stability":[204],"change":[205],"mutants":[208],"(0.37)":[212],"ASA":[214],"(0.43).":[215],"results,":[217],"together":[218],"with":[219],"its":[220],"easy":[221],"C\u03b1-atom-based":[222],"calculation,":[223],"highlight":[224],"potential":[226],"usefulness":[227],"structure":[233],"refinement":[236],"well":[238],"prediction.":[241],"AVAILABILITY":[242],"AND":[243],"IMPLEMENTATION:":[244],"available":[248,260],"at":[249,261],"http://sparks-lab.org":[250],"CONTACT:":[251],"yuedong.yang@griffith.edu.au":[252],"yaoqi.zhou@griffith.edu.au":[254],"SUPPLEMENTARY":[255],"INFORMATION:":[256],"Supplementary":[257],"data":[258],"Bioinformatics":[262],"online.":[263]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":12},{"year":2019,"cited_by_count":18},{"year":2018,"cited_by_count":19},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":7}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
