{"id":"https://openalex.org/W1894777043","doi":"https://doi.org/10.1093/bioinformatics/btv629","title":"<i>cat</i>RAPID <i>signature</i>: identification of ribonucleoproteins and RNA-binding regions","display_name":"<i>cat</i>RAPID <i>signature</i>: identification of ribonucleoproteins and RNA-binding regions","publication_year":2015,"publication_date":"2015-10-31","ids":{"openalex":"https://openalex.org/W1894777043","doi":"https://doi.org/10.1093/bioinformatics/btv629","mag":"1894777043","pmid":"https://pubmed.ncbi.nlm.nih.gov/26520853"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv629","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv629","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/5/773/49017693/bioinformatics_32_5_773.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/5/773/49017693/bioinformatics_32_5_773.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060173750","display_name":"Carmen Maria Livi","orcid":"https://orcid.org/0000-0002-4974-1403"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Carmen Maria Livi","raw_affiliation_strings":["1 Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain,","2 Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain,","institution_ids":["https://openalex.org/I4210137962"]},{"raw_affiliation_string":"2 Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain and","institution_ids":["https://openalex.org/I170486558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038549986","display_name":"Petr Klus","orcid":"https://orcid.org/0000-0002-3465-2985"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Petr Klus","raw_affiliation_strings":["1 Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain,","2 Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain,","institution_ids":["https://openalex.org/I4210137962"]},{"raw_affiliation_string":"2 Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain and","institution_ids":["https://openalex.org/I170486558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040236847","display_name":"Riccardo Delli Ponti","orcid":"https://orcid.org/0000-0001-6541-0519"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Riccardo Delli Ponti","raw_affiliation_strings":["1 Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain,","2 Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain,","institution_ids":["https://openalex.org/I4210137962"]},{"raw_affiliation_string":"2 Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain and","institution_ids":["https://openalex.org/I170486558"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052209378","display_name":"Gian Gaetano Tartaglia","orcid":"https://orcid.org/0000-0001-7524-6310"},"institutions":[{"id":"https://openalex.org/I11932220","display_name":"Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats","ror":"https://ror.org/0371hy230","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I11932220"]},{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Gian Gaetano Tartaglia","raw_affiliation_strings":["1 Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain,","2 Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain and","3 Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats (ICREA), 08010 Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain,","institution_ids":["https://openalex.org/I4210137962"]},{"raw_affiliation_string":"2 Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain and","institution_ids":["https://openalex.org/I170486558"]},{"raw_affiliation_string":"3 Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats (ICREA), 08010 Barcelona, Spain","institution_ids":["https://openalex.org/I11932220"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5052209378"],"corresponding_institution_ids":["https://openalex.org/I11932220","https://openalex.org/I170486558","https://openalex.org/I4210137962"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":3.17,"has_fulltext":true,"cited_by_count":152,"citation_normalized_percentile":{"value":0.92349275,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"32","issue":"5","first_page":"773","last_page":"775"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.5375000238418579,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.5375000238418579,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.19939999282360077,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.06729999929666519,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.7378593683242798},{"id":"https://openalex.org/keywords/rna-binding-protein","display_name":"RNA-binding protein","score":0.6401014924049377},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6397527456283569},{"id":"https://openalex.org/keywords/ribonucleoprotein","display_name":"Ribonucleoprotein","score":0.6139316558837891},{"id":"https://openalex.org/keywords/signature","display_name":"Signature (topology)","score":0.5618499517440796},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5248256325721741},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4415892958641052},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.38352811336517334},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3087446093559265},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.17668738961219788},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1084042489528656}],"concepts":[{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.7378593683242798},{"id":"https://openalex.org/C41282012","wikidata":"https://www.wikidata.org/wiki/Q3928341","display_name":"RNA-binding protein","level":4,"score":0.6401014924049377},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6397527456283569},{"id":"https://openalex.org/C75934600","wikidata":"https://www.wikidata.org/wiki/Q419245","display_name":"Ribonucleoprotein","level":4,"score":0.6139316558837891},{"id":"https://openalex.org/C2779696439","wikidata":"https://www.wikidata.org/wiki/Q7512811","display_name":"Signature (topology)","level":2,"score":0.5618499517440796},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5248256325721741},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4415892958641052},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.38352811336517334},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3087446093559265},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.17668738961219788},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1084042489528656},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012261","descriptor_name":"Ribonucleoproteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012261","descriptor_name":"Ribonucleoproteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012261","descriptor_name":"Ribonucleoproteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/btv629","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv629","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/5/773/49017693/bioinformatics_32_5_773.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26520853","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26520853","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:repositori.upf.edu:10230/26792","is_oa":true,"landing_page_url":"http://hdl.handle.net/10230/26792","pdf_url":null,"source":{"id":"https://openalex.org/S4306402615","display_name":"Repositori digital de la UPF (Universitat Pompeu Fabra)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I170486558","host_organization_name":"Universitat Pompeu Fabra","host_organization_lineage":["https://openalex.org/I170486558"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:iris.uniroma1.it:11573/1277781","is_oa":true,"landing_page_url":"http://hdl.handle.net/11573/1277781","pdf_url":"http://hdl.handle.net/11573/1277781","source":{"id":"https://openalex.org/S4377196107","display_name":"IRIS Research product catalog (Sapienza University of Rome)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:3767184","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4795616","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/5/773","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/5/773","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv629","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv629","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/5/773/49017693/bioinformatics_32_5_773.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G265847165","display_name":null,"funder_award_id":"FP7/2007\u20102013","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G3207356259","display_name":null,"funder_award_id":"2007\u20132013","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G393177772","display_name":null,"funder_award_id":"FP7 2007-2013","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4779081321","display_name":null,"funder_award_id":"BFU2014-55054-P","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G496129201","display_name":null,"funder_award_id":"2007 \u2013 2013","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G5418912364","display_name":null,"funder_award_id":"BFU2014","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G5655821971","display_name":null,"funder_award_id":"SEV\u20102012\u20100208","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G5702163051","display_name":null,"funder_award_id":"FP7/2007","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321837","display_name":"Ministerio de Econom\u00eda y Competitividad","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1894777043.pdf","grobid_xml":"https://content.openalex.org/works/W1894777043.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W1731645091","https://openalex.org/W1986911150","https://openalex.org/W2015175027","https://openalex.org/W2025075195","https://openalex.org/W2041440237","https://openalex.org/W2055431298","https://openalex.org/W2089927164","https://openalex.org/W2096387274","https://openalex.org/W2108575282","https://openalex.org/W2116498086","https://openalex.org/W2119493141","https://openalex.org/W2119948329","https://openalex.org/W2135621733","https://openalex.org/W2141487131","https://openalex.org/W2142678478","https://openalex.org/W2148816697"],"related_works":["https://openalex.org/W2037531772","https://openalex.org/W1528262319","https://openalex.org/W1222908588","https://openalex.org/W1972739143","https://openalex.org/W2089905153","https://openalex.org/W2569356794","https://openalex.org/W2889148048","https://openalex.org/W1972790961","https://openalex.org/W2093887574","https://openalex.org/W1984123248"],"abstract_inverted_index":{"MOTIVATION:":[0],"Recent":[1],"technological":[2],"advances":[3],"revealed":[4],"that":[5],"an":[6],"unexpected":[7],"large":[8],"number":[9],"of":[10,35,59,70,75,96],"proteins":[11,44,72],"interact":[12],"with":[13],"transcripts":[14],"even":[15],"if":[16],"the":[17,51,57,68],"RNA-binding":[18,53,60,71,77],"domains":[19],"are":[20,80,117],"not":[21],"annotated.":[22],"We":[23],"introduce":[24],"catRAPID":[25,62,92,102],"signature":[26,63,103],"to":[27,91],"identify":[28],"ribonucleoproteins":[29],"based":[30],"on":[31,42,47,82],"physico-chemical":[32],"features":[33],"instead":[34],"sequence":[36],"similarity":[37],"searches.":[38],"The":[39],"algorithm,":[40],"trained":[41],"human":[43],"and":[45,73,85],"tested":[46],"model":[48],"organisms,":[49],"calculates":[50],"overall":[52],"propensity":[54],"followed":[55],"by":[56],"prediction":[58],"regions.":[61,78],"outperforms":[64],"other":[65],"algorithms":[66],"in":[67],"identification":[69],"detection":[74],"non-classical":[76],"Results":[79],"visualized":[81],"a":[83],"webpage":[84],"can":[86,104],"be":[87,105],"downloaded":[88],"or":[89,111],"forwarded":[90],"omics":[93],"for":[94],"predictions":[95],"RNA":[97],"targets.":[98],"AVAILABILITY":[99],"AND":[100],"IMPLEMENTATION:":[101],"accessed":[106],"at":[107,119],"http://s.tartaglialab.com/new_submission/signature":[108],"CONTACT:":[109],"gian.tartaglia@crg.es":[110],"gian@tartaglialab.com":[112],"SUPPLEMENTARY":[113],"INFORMATION:":[114],"Supplementary":[115],"data":[116],"available":[118],"Bioinformatics":[120],"online.":[121]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":16},{"year":2023,"cited_by_count":48},{"year":2022,"cited_by_count":13},{"year":2021,"cited_by_count":18},{"year":2020,"cited_by_count":13},{"year":2019,"cited_by_count":11},{"year":2018,"cited_by_count":12},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":1}],"updated_date":"2026-08-10T07:06:39.071514","created_date":"2016-06-24T00:00:00"}
