{"id":"https://openalex.org/W2176522635","doi":"https://doi.org/10.1093/bioinformatics/btv616","title":"IsoMIF Finder: online detection of binding site molecular interaction field similarities","display_name":"IsoMIF Finder: online detection of binding site molecular interaction field similarities","publication_year":2015,"publication_date":"2015-10-25","ids":{"openalex":"https://openalex.org/W2176522635","doi":"https://doi.org/10.1093/bioinformatics/btv616","mag":"2176522635","pmid":"https://pubmed.ncbi.nlm.nih.gov/26504139"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv616","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv616","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/4/621/49017507/bioinformatics_32_4_621.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/4/621/49017507/bioinformatics_32_4_621.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047216486","display_name":"Matthieu Chartier","orcid":null},"institutions":[{"id":"https://openalex.org/I135117807","display_name":"Universit\u00e9 de Sherbrooke","ror":"https://ror.org/00kybxq39","country_code":"CA","type":"education","lineage":["https://openalex.org/I135117807"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Matthieu Chartier","raw_affiliation_strings":["1 Department of Biochemistry, Faculty of Medicine and Health Sciences, University of Sherbrooke, Sherbrooke, J1H 5N4 QC, Canada and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biochemistry, Faculty of Medicine and Health Sciences, University of Sherbrooke, Sherbrooke, J1H 5N4 QC, Canada and","institution_ids":["https://openalex.org/I135117807"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085215706","display_name":"Etienne Adriansen","orcid":null},"institutions":[{"id":"https://openalex.org/I205703379","display_name":"Institut Mines-T\u00e9l\u00e9com","ror":"https://ror.org/025vp2923","country_code":"FR","type":"facility","lineage":["https://openalex.org/I205703379"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Etienne Adriansen","raw_affiliation_strings":["2 Telecommunication and computer network engineering, T\u00e9l\u00e9com Lille, Lille 1 University, 59650 Villeneuve-d'Ascq, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2 Telecommunication and computer network engineering, T\u00e9l\u00e9com Lille, Lille 1 University, 59650 Villeneuve-d'Ascq, France","institution_ids":["https://openalex.org/I205703379"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5019812910","display_name":"Rafa\u00ebl Najmanovich","orcid":"https://orcid.org/0000-0002-6971-7224"},"institutions":[{"id":"https://openalex.org/I135117807","display_name":"Universit\u00e9 de Sherbrooke","ror":"https://ror.org/00kybxq39","country_code":"CA","type":"education","lineage":["https://openalex.org/I135117807"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Rafael Najmanovich","raw_affiliation_strings":["1 Department of Biochemistry, Faculty of Medicine and Health Sciences, University of Sherbrooke, Sherbrooke, J1H 5N4 QC, Canada and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biochemistry, Faculty of Medicine and Health Sciences, University of Sherbrooke, Sherbrooke, J1H 5N4 QC, Canada and","institution_ids":["https://openalex.org/I135117807"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5019812910"],"corresponding_institution_ids":["https://openalex.org/I135117807"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":3.0052,"has_fulltext":true,"cited_by_count":27,"citation_normalized_percentile":{"value":0.91783136,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"32","issue":"4","first_page":"621","last_page":"623"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10274","display_name":"Synthesis and biological activity","score":0.9908000230789185,"subfield":{"id":"https://openalex.org/subfields/1605","display_name":"Organic Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10375","display_name":"Pharmacogenetics and Drug Metabolism","score":0.9829000234603882,"subfield":{"id":"https://openalex.org/subfields/3004","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.7523979544639587},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.721622109413147},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7202562689781189},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.5873332023620605},{"id":"https://openalex.org/keywords/session","display_name":"Session (web analytics)","score":0.5634323954582214},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5355719327926636},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4967649579048157},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.44519078731536865},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.4424986243247986},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.43289387226104736},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40793144702911377},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34508782625198364},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.273268461227417},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.19134482741355896},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1724870204925537},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08936244249343872},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.08775216341018677}],"concepts":[{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.7523979544639587},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.721622109413147},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7202562689781189},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.5873332023620605},{"id":"https://openalex.org/C2779182362","wikidata":"https://www.wikidata.org/wiki/Q17126187","display_name":"Session (web analytics)","level":2,"score":0.5634323954582214},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5355719327926636},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4967649579048157},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.44519078731536865},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.4424986243247986},{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.43289387226104736},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40793144702911377},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34508782625198364},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.273268461227417},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.19134482741355896},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1724870204925537},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08936244249343872},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.08775216341018677},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btv616","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv616","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/4/621/49017507/bioinformatics_32_4_621.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26504139","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26504139","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/4/621","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/4/621","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:4743630","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4743630","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv616","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv616","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/4/621/49017507/bioinformatics_32_4_621.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1749632606","display_name":null,"funder_award_id":"RGPIN-2014","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G6153461078","display_name":null,"funder_award_id":"RGPIN-2014-05766","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"}],"funders":[{"id":"https://openalex.org/F4320316039","display_name":"Qu\u00e9bec Consortium for Drug Discovery","ror":"https://ror.org/03hhwkj37"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2176522635.pdf","grobid_xml":"https://content.openalex.org/works/W2176522635.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W853235284","https://openalex.org/W1991231915","https://openalex.org/W2013701719","https://openalex.org/W2015613785","https://openalex.org/W2050918141","https://openalex.org/W2074192927","https://openalex.org/W2084622547","https://openalex.org/W2120905579","https://openalex.org/W2127866370","https://openalex.org/W2150065588","https://openalex.org/W2152500739","https://openalex.org/W2153153865","https://openalex.org/W2167226024","https://openalex.org/W4237017626"],"related_works":["https://openalex.org/W4287378204","https://openalex.org/W2545422590","https://openalex.org/W4240705470","https://openalex.org/W2090630809","https://openalex.org/W2945311252","https://openalex.org/W2153650863","https://openalex.org/W2981957539","https://openalex.org/W4295210903","https://openalex.org/W2105249189","https://openalex.org/W2924735795"],"abstract_inverted_index":{"Abstract":[0],"Summary:":[1],"IsoMIF":[2,74],"Finder":[3,75],"is":[4,82],"an":[5],"online":[6],"server":[7],"for":[8,43],"the":[9,44],"identification":[10,48],"of":[11,27,35,46,49],"molecular":[12],"interaction":[13],"field":[14],"(MIF)":[15],"similarities.":[16],"User":[17],"defined":[18],"binding":[19],"site":[20],"MIFs":[21,29],"can":[22,40,60],"be":[23,41,61],"compared":[24],"to":[25],"datasets":[26],"pre-calculated":[28],"or":[30,52,66],"against":[31],"a":[32,64,68],"user-defined":[33],"list":[34],"PDB":[36],"entries.":[37],"The":[38],"interface":[39],"used":[42],"prediction":[45],"function,":[47],"potential":[50],"cross-reactivity":[51],"polypharmacological":[53],"targets":[54],"and":[55,72,84],"drug":[56],"repurposing.":[57],"Detected":[58],"similarities":[59],"viewed":[62],"in":[63],"browser":[65],"within":[67],"PyMOL":[69],"session.":[70],"Availability":[71],"Implementation:":[73],"uses":[76],"JSMOL":[77],"(no":[78],"java":[79],"plugin":[80],"required),":[81],"cross-browser":[83],"freely":[85],"available":[86,96],"at":[87,97],"bcb.med.usherbrooke.ca/imfi.":[88],"Contact:":[89],"Rafael.Najmanovich@Usherbrooke.ca":[90],"Supplementary":[91,93],"information:":[92],"data":[94],"are":[95],"Bioinformatics":[98],"online.":[99]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":1}],"updated_date":"2026-08-09T07:27:16.801131","created_date":"2016-06-24T00:00:00"}
