{"id":"https://openalex.org/W2261998615","doi":"https://doi.org/10.1093/bioinformatics/btv611","title":"DARA: a web server for rapid search of structural neighbours using solution small angle X-ray scattering data","display_name":"DARA: a web server for rapid search of structural neighbours using solution small angle X-ray scattering data","publication_year":2015,"publication_date":"2015-10-25","ids":{"openalex":"https://openalex.org/W2261998615","doi":"https://doi.org/10.1093/bioinformatics/btv611","mag":"2261998615","pmid":"https://pubmed.ncbi.nlm.nih.gov/26504146"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv611","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv611","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/4/616/6688942/btv611.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/4/616/6688942/btv611.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021682643","display_name":"Alexey Kikhney","orcid":"https://orcid.org/0000-0003-1321-3956"},"institutions":[{"id":"https://openalex.org/I4210153543","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/050589e39","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560","https://openalex.org/I4210153543"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Alexey G. Kikhney","raw_affiliation_strings":["1 European Molecular Biology Laboratory, Hamburg Outstation, EMBL c/o DESY, 22607 Hamburg, Germany and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 European Molecular Biology Laboratory, Hamburg Outstation, EMBL c/o DESY, 22607 Hamburg, Germany and","institution_ids":["https://openalex.org/I4210153543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050880477","display_name":"Alejandro Panjkovich","orcid":"https://orcid.org/0000-0002-9111-3232"},"institutions":[{"id":"https://openalex.org/I4210153543","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/050589e39","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560","https://openalex.org/I4210153543"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Alejandro Panjkovich","raw_affiliation_strings":["1 European Molecular Biology Laboratory, Hamburg Outstation, EMBL c/o DESY, 22607 Hamburg, Germany and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 European Molecular Biology Laboratory, Hamburg Outstation, EMBL c/o DESY, 22607 Hamburg, Germany and","institution_ids":["https://openalex.org/I4210153543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061225686","display_name":"Anna Sokolova","orcid":"https://orcid.org/0000-0002-2772-7395"},"institutions":[{"id":"https://openalex.org/I1334950195","display_name":"Australian Nuclear Science and Technology Organisation","ror":"https://ror.org/05j7fep28","country_code":"AU","type":"government","lineage":["https://openalex.org/I1334950195","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I4405259527","display_name":"Australian Centre for Neutron Scattering","ror":"https://ror.org/02c5qvj97","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1334950195","https://openalex.org/I2801453606","https://openalex.org/I4387156119","https://openalex.org/I4405259527"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Anna V. Sokolova","raw_affiliation_strings":["2 Bragg Institute, ANSTO, Lucas Heights, 2234 NSW Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2 Bragg Institute, ANSTO, Lucas Heights, 2234 NSW Australia","institution_ids":["https://openalex.org/I1334950195","https://openalex.org/I4405259527"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081712139","display_name":"Dmitri I. Svergun","orcid":"https://orcid.org/0000-0003-0830-5696"},"institutions":[{"id":"https://openalex.org/I4210153543","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/050589e39","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560","https://openalex.org/I4210153543"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Dmitri I. Svergun","raw_affiliation_strings":["1 European Molecular Biology Laboratory, Hamburg Outstation, EMBL c/o DESY, 22607 Hamburg, Germany and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 European Molecular Biology Laboratory, Hamburg Outstation, EMBL c/o DESY, 22607 Hamburg, Germany and","institution_ids":["https://openalex.org/I4210153543"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5081712139"],"corresponding_institution_ids":["https://openalex.org/I4210153543"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.2604,"has_fulltext":true,"cited_by_count":20,"citation_normalized_percentile":{"value":0.78329959,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"32","issue":"4","first_page":"616","last_page":"618"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9394999742507935,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9394999742507935,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.04830000177025795,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11183","display_name":"Advanced X-ray Imaging Techniques","score":0.0013000000035390258,"subfield":{"id":"https://openalex.org/subfields/3108","display_name":"Radiation"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/small-angle-x-ray-scattering","display_name":"Small-angle X-ray scattering","score":0.9567880630493164},{"id":"https://openalex.org/keywords/scattering","display_name":"Scattering","score":0.7807410359382629},{"id":"https://openalex.org/keywords/macromolecule","display_name":"Macromolecule","score":0.7477751970291138},{"id":"https://openalex.org/keywords/small-angle-scattering","display_name":"Small-angle scattering","score":0.5808975100517273},{"id":"https://openalex.org/keywords/crystallography","display_name":"Crystallography","score":0.44223350286483765},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.4139457941055298},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3412122130393982},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3299179673194885},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.29293474555015564},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.26860833168029785},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.25989168882369995},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19191402196884155},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.08726939558982849}],"concepts":[{"id":"https://openalex.org/C131888329","wikidata":"https://www.wikidata.org/wiki/Q3027679","display_name":"Small-angle X-ray scattering","level":3,"score":0.9567880630493164},{"id":"https://openalex.org/C191486275","wikidata":"https://www.wikidata.org/wiki/Q210028","display_name":"Scattering","level":2,"score":0.7807410359382629},{"id":"https://openalex.org/C204389451","wikidata":"https://www.wikidata.org/wiki/Q178593","display_name":"Macromolecule","level":2,"score":0.7477751970291138},{"id":"https://openalex.org/C112416005","wikidata":"https://www.wikidata.org/wiki/Q7542589","display_name":"Small-angle scattering","level":3,"score":0.5808975100517273},{"id":"https://openalex.org/C8010536","wikidata":"https://www.wikidata.org/wiki/Q160398","display_name":"Crystallography","level":1,"score":0.44223350286483765},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.4139457941055298},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3412122130393982},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3299179673194885},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.29293474555015564},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.26860833168029785},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.25989168882369995},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19191402196884155},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.08726939558982849}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014961","descriptor_name":"X-Ray Diffraction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014961","descriptor_name":"X-Ray Diffraction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014961","descriptor_name":"X-Ray Diffraction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D046911","descriptor_name":"Macromolecular Substances","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D046911","descriptor_name":"Macromolecular Substances","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D046911","descriptor_name":"Macromolecular Substances","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D053838","descriptor_name":"Scattering, Small Angle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053838","descriptor_name":"Scattering, Small Angle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053838","descriptor_name":"Scattering, Small Angle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btv611","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv611","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/4/616/6688942/btv611.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26504146","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26504146","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/4/616","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/4/616","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:4743626","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4743626","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv611","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv611","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/4/616/6688942/btv611.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2493350895","display_name":null,"funder_award_id":"283570","funder_id":"https://openalex.org/F4320338364","funder_display_name":"FP7 Research infrastructures"}],"funders":[{"id":"https://openalex.org/F4320338364","display_name":"FP7 Research infrastructures","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2261998615.pdf","grobid_xml":"https://content.openalex.org/works/W2261998615.grobid-xml"},"referenced_works_count":5,"referenced_works":["https://openalex.org/W1977038370","https://openalex.org/W2066088601","https://openalex.org/W2072986569","https://openalex.org/W2109872885","https://openalex.org/W2582743722"],"related_works":["https://openalex.org/W2323342800","https://openalex.org/W2024020507","https://openalex.org/W2063442531","https://openalex.org/W4210964400","https://openalex.org/W2040212069","https://openalex.org/W2088684376","https://openalex.org/W1996199021","https://openalex.org/W2020228736","https://openalex.org/W2065033779","https://openalex.org/W1567457992"],"abstract_inverted_index":{"MOTIVATION:":[0],"Small":[1],"angle":[2],"X-ray":[3],"scattering":[4,19,42,77],"(SAXS)":[5],"is":[6],"an":[7],"established":[8],"method":[9],"for":[10,100],"studying":[11],"biological":[12,53],"macromolecules":[13,51,89],"in":[14,55],"solution,":[15],"whereby":[16],"the":[17,23,29,46,56,75],"experimental":[18,68],"patterns":[20],"relate":[21],"to":[22,60],"quaternary":[24],"and":[25,52,82,103],"tertiary":[26],"structure":[27],"of":[28,50,65,74,85,88,105],"macromolecule.":[30],"Here":[31],"we":[32],"present":[33],"DARA,":[34],"a":[35,66,80,92],"web-server,":[36],"that":[37],"queries":[38],"over":[39],"150":[40],"000":[41],"profiles":[43],"pre-computed":[44],"from":[45],"high":[47],"resolution":[48],"models":[49],"assemblies":[54],"Protein":[57],"Data":[58],"Bank,":[59],"rapidly":[61],"find":[62],"nearest":[63],"neighbours":[64],"given":[67],"or":[69],"theoretical":[70],"SAXS":[71,93],"pattern.":[72],"Identification":[73],"best":[76],"equivalents":[78],"provides":[79],"straightforward":[81],"automated":[83],"way":[84],"structural":[86],"assessment":[87],"based":[90],"on":[91],"profile.":[94],"DARA":[95],"results":[96],"are":[97],"useful":[98],"e.g.":[99],"fold":[101],"recognition":[102],"finding":[104],"biologically":[106],"active":[107],"oligomers.":[108],"AVAILABILITY":[109],"AND":[110],"IMPLEMENTATION:":[111],"http://dara.embl-hamburg.de/.":[112]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":4}],"updated_date":"2026-08-09T07:27:16.801131","created_date":"2025-10-10T00:00:00"}
